GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:07:54

Sequence gi568815593r:134506953_134724019 : 217067 bp : 46.69% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1866   1933   68  2  2   93   61    56 0.243   3.94
 1.02 Intr +   2034   2120   87  0  0  119   95    18 0.582   4.69
 1.03 Intr +  31037  31131   95  2  2  141   90   168 0.971  21.91
 1.04 Intr +  37193  37403  211  0  1   20   46   165 0.549   3.47
 1.05 Intr +  37514  37586   73  2  1   60  105   -25 0.396  -4.19
 1.06 Intr +  45100  45257  158  0  2  122   83   225 0.706  24.21
 1.07 Intr +  48379  48464   86  1  2   99   72    34 0.422   2.36
 1.08 Intr +  49188  49240   53  1  2   96   80   -13 0.371  -2.67
 1.09 Intr +  52685  52803  119  1  2   80   53    58 0.589   0.76
 1.10 Intr +  52878  53038  161  0  2  124   69   219 0.994  23.23
 1.11 Intr +  53794  54005  212  2  2  126   80   412 0.999  42.83
 1.12 Intr +  55248  55415  168  2  0  118   90   179 0.646  21.24
 1.13 Intr +  57542  57658  117  1  0   67   91   141 0.993  12.96
 1.14 Intr +  59164  59628  465  0  0  128   96   899 0.996  88.02
 1.15 Intr +  62919  62984   66  2  0  113   82     7 0.736   1.70
 1.16 Intr +  66693  66810  118  2  1   70   80    68 0.875   4.24
 1.17 Intr +  69816  69944  129  1  0   79   92   120 0.950  12.17
 1.18 Term +  71542  72365  824  2  2  108   35   823 0.612  72.26
 1.19 PlyA +  72837  72842    6                               1.05

 2.03 PlyA -  73625  73620    6                              -0.45
 2.02 Term -  74798  74538  261  2  0   75   53   124 0.528   3.13
 2.01 Init -  76155  76084   72  0  0   83   60    48 0.275   2.75
 2.00 Prom -  96938  96899   40                              -4.96

 3.05 PlyA -  98920  98915    6                               1.05
 3.04 Term - 100114  99998  117  1  0   95   41   117 0.999   6.24
 3.03 Intr - 101551 101420  132  1  0   80   93   101 0.998  10.64
 3.02 Intr - 102722 102619  104  0  2   47   95    62 0.938   2.69
 3.01 Init - 105523 105502   22  1  1   71  116    12 0.426   2.39
 3.00 Prom - 127882 127843   40                              -6.26

 4.00 Prom + 129005 129044   40                              -4.66
 4.01 Init + 135650 135652    3  1  0  108   81     0 0.741   1.30
 4.02 Intr + 141484 141642  159  0  0   49   41   134 0.199   4.98
 4.03 Intr + 142056 142221  166  2  1   87  113    69 0.317   8.83
 4.04 Intr + 159925 160044  120  2  0   50  115    55 0.355   4.87
 4.05 Intr + 164857 164934   78  2  0   76   72    90 0.817   5.72
 4.06 Intr + 167746 167823   78  2  0   49   97    62 0.757   2.72
 4.07 Intr + 168103 168265  163  2  1   59   61    94 0.859   2.83
 4.08 Intr + 169071 169173  103  0  1   54   68    89 0.987   3.68
 4.09 Intr + 172650 172776  127  2  1  117   56    80 0.981   7.95
 4.10 Intr + 185650 185705   56  2  2  102   94    -8 0.713  -0.10
 4.11 Intr + 186775 186981  207  0  0   57   72    86 0.489   3.17
 4.12 Intr + 190174 190294  121  0  1   44  106    17 0.455  -0.83
 4.13 Intr + 190947 191105  159  1  0   98   97   117 0.976  13.56
 4.14 Intr + 196807 196980  174  2  0  135   94    20 0.946   7.21
 4.15 Intr + 198375 198485  111  1  0   88   86    30 0.849   3.15
 4.16 Intr + 201761 201936  176  0  2   41  110    41 0.333   1.26
 4.17 Intr + 211117 211221  105  0  0   84   84    77 0.381   7.31

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:134506953_134724019|GENSCAN_predicted_peptide_1|1069_aa
MALAAPQFGMSIFRNSGNKCLLLWSLTAFEPHHLLGLPLCVSPVLDTYSADLSCDIYIRI
KMLQTAQQHQVGLAPTERKEALRGSQSPQKSASGQRPGSLDRELLMLIKISKCLRVPSGP
SSVLGTESTGPVPGELVLCQQDAGATQEGVCYGRELMICRCDSFPRLMEPWGVKGTPEVF
RTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRVKTPSPPID
PSQLTPSSQLTSAVLATAEALSHSFWQPCPRPQDASQSSESLQGGQMVEEEVKEGVEGGG
PCVVSKHTCPSAPELDWILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDAYWL
ELINSELKEMERPELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVCDVCRS
PEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPT
RSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMP
SCVTAFHVTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGGPRNEPTSEPTEPSQAGEDL
EKVTLRKQRLQQLEEDFYELVEPAEVAERLDLAEALVDFIYQYWKLKRKANANQPLLTPK
TDEVDNLAQQEQDVLYRRLKLFTHLRQDLERGSPNPLVPLPHPSPVTTSSCSQVRNLCYM
VTRRERTKHAICKLQEQIFHLQMKLIEQDLCRERSGRRAKGKKSDSKRKGCEGSKGSTEK
KEKVKAGPDSVLGQLAGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDPA
PGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTP
DKAPKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETP
DEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAERPKV
SLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEVVRMGVLAS

>gi568815593r:134506953_134724019|GENSCAN_predicted_CDS_1|3210_bp
atggctttagcagcacctcaatttgggatgtctattttccggaacagcgggaataagtgt
ctgctgctctggtctctcactgccttcgagccccatcacctgctcgggctccccctctgt
gtgtccccagttctggacacttattcagcagacctgtcatgcgacatctacatccgcatc
aagatgctccaaactgcccagcagcaccaagtcgggctggccccgacagaacgaaaagaa
gccctccgaggaagtcagagtccccagaagtcagccagtgggcagaggcctgggtctctg
gaccgggagctgctgatgctgatcaaaatcagcaagtgcttaagagtacctagtgggcct
agctcagtgctggggacagaaagcacaggccctgtccctggggagcttgtcctttgtcag
caggatgcaggtgctacacaggaaggtgtctgttatgggagggagttgatgatctgtaga
tgtgactccttcccgagactcatggagccctggggggtgaagggaaccccagaggttttc
cggacagacttgatcacagccatgaagatcccggactcataccagctcagcccggatgac
tactacatcctggcagacccatggcgacaggaatgggagaaaggtgtgcaggtgcctgcc
ggggcagaggccatcccagagcccgtggtgagggtaaagaccccctcccctcccatagat
cccagccagctgacgccctcctcccagctgacctccgccgtcctggctacagctgaggcg
ctgagtcacagcttctggcagccttgcccccgaccccaggatgcctctcaatcatctgag
tctctgcagggtgggcagatggtggaggaggaagtgaaggagggggtggaaggaggtggg
ccctgtgtggtgtcaaagcacacttgtccatcagctcctgagctggactggatcctccca
ccactggaaggcccccctgcccaggcatccccgagcagcaccatgcttggtgagggctcc
cagcctgattggccagggggcagccgctatgacttggacgagattgatgcctactggctg
gagctcatcaactcggagcttaaggagatggagaggccggagctggacgagctgacatta
gagcgtgtgctggaggagctggagaccctgtgccaccagaatatggccagggccattgag
acgcaggaggggctgggcatcgagtacgacgaggatgttgtctgcgacgtgtgtcgctct
cctgagggcgaggatggcaacgagatggtcttctgtgacaagtgcaacgtctgtgtgcat
caggcatgctacgggatcctcaaggtgcccacgggcagctggctgtgccggacgtgtgcc
ctgggtgtccagccaaagtgcctgctctgccccaagcgaggaggagccttgaagcccact
agaagtgggaccaagtgggtgcatgtcagctgtgccctatggattcctgaggtcagcatc
ggctgcccagagaagatggagcccatcaccaagatctcgcatatcccagccagccgctgg
gctctgtcctgcagcctctgcaaggaatgcacaggcacctgcatccagtgttccatgcct
tcctgcgtcacagcgttccatgtcacatgcgcctttgaccacggcctggaaatgcggact
atattagcagacaacgatgaggtcaagttcaagtcattctgccaggagcacagtgacggg
ggcccacgtaatgagcccacatctgagcccacggaacccagccaggctggcgaggacctg
gaaaaggtgaccctgcgcaagcagcggctgcagcagctagaggaggacttctacgagctg
gtggagccggctgaggtggctgagcggctggacctggctgaggcactggtcgacttcatc
taccagtactggaagctgaagaggaaagccaatgccaaccagccgctgctgacccccaag
accgacgaggtggacaacctggcccagcaggagcaggacgtcctctaccgccgcctgaag
ctcttcacccatctgcggcaggacctagagaggggctcccccaacccattagtgcccttg
cctcacccaagcccagtcaccacctccagctgctcccaggttagaaatctgtgctacatg
gtgacaaggcgcgagagaacgaaacacgccatctgcaaactccaggagcagatattccac
ctgcagatgaaacttattgaacaggatctgtgtcgagagcggtctgggaggagagcaaag
ggcaagaagagtgactcgaagaggaagggctgcgagggctccaagggcagcactgagaag
aaagagaaagtgaaggcggggcctgactcagtcctggggcagctggcaggcctgtccacc
tcattccccatcgatggcaccttcttcaacagctggctggcacagtcggtgcagatcaca
gcagagaacatggccatgagcgagtggccactgaacaatgggcaccgcgaggaccctgct
ccagggctgctgtcagaggaactgctgcaggacgaggagacactgctcagcttcatgcgg
gacccctcgctgcgacctggtgaccctgctaggaaggcccgaggccgcacccgcctgcct
gccaagaagaaaccaccaccaccaccaccgcaggacgggcctggttcacggacgactcca
gacaaagcccccaagaagacctggggccaggatgcaggcagtggcaaggggggtcaaggg
ccacctaccaggaagccaccacgtcggacatcttctcacttgccgtccagccctgcagcc
ggggactgtcccatcctagccacccctgaaagccccccgccactggcccctgagaccccg
gacgaggcagcctcagtagctgctgactcagatgtccaagtgcctggccctgcagcaagc
cctaagcctttgggccggctccggccaccccgcgagagcaaggtaacccggagattgccg
ggtgccaggcctgatgctgggatgggaccaccttcagctgtggctgagaggcccaaggtc
agcctgcattttgacactgagactgatggctacttctctgatggggagatgagcgactca
gatgtagaggccgaggacggtggggtgcagcggggtccccgggaggcaggggcagaggag
gtggtccgcatgggcgtactggcctcctaa

>gi568815593r:134506953_134724019|GENSCAN_predicted_peptide_2|110_aa
MGLGTMQQRQHRIMQGTAGTGHTQQPASLTDIWVLQDTGSATVQSKATANEEGPESRGQQ
CEQRLLEEHQPARGKGPDSLHPLPNSPPTPATREAQPLPQDGVKGQGAKC

>gi568815593r:134506953_134724019|GENSCAN_predicted_CDS_2|333_bp
atggggctgggaactatgcagcagcggcaacacagaatcatgcagggcacagcgggcact
ggccacacccagcagccagccagcctaacagacatctgggttctgcaggacacaggctca
gcaacagtccagtccaaagcaacagccaatgaagaagggccagaatccagaggccaacaa
tgtgagcagaggctcttggaagaacaccagccagcccgaggcaaggggccagactcgttg
caccctctccctaattctccacccacccctgccaccagggaggcccagcccctgccccag
gatggtgtgaaggggcaaggggccaagtgctga

>gi568815593r:134506953_134724019|GENSCAN_predicted_peptide_3|124_aa
MGFRHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN
KIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMA
QYID

>gi568815593r:134506953_134724019|GENSCAN_predicted_CDS_3|375_bp
atgggatttcgccacgttcaagctcgaagagtgtggaaaaactaccttcctgctatcaat
ggcattgtatttctggtggattgtgcagaccacgaaaggctgttagagtcaaaagaagaa
cttgattcactaatgacagatgaaaccattgctaatgtgcctatactgattcttgggaat
aagatcgacagacctgaagccatcagtgaagagaggttgcgagagatgtttggtttatat
ggtcagacaacaggaaaggggagtatatctctgaaagaactgaatgcccgacccttagaa
gttttcatgtgtagtgtgctcaaaagacaaggttacggagaaggcttccgctggatggca
cagtacattgattaa

>gi568815593r:134506953_134724019|GENSCAN_predicted_peptide_4|702_aa
MVIFTKPEERNCQSHPTKAATESQIAPRSWLCERGHVHNGGNFRSGDTRHFRPAQWSFSS
LLVRCCRPRPAPSNPVIMSQPGIPASGGAPASLQAQNGAALASGSPYTNGAPHGPPPAGG
PPPVRALTPLTSSYRDVPQPLFNSAVNQEGITSNTNNGSMVVHSSYDEIEGGGLLEHNTT
WCNWSTTLFLELPKWATSLYSGANHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPLKPP
VPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTI
VRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDDVFIPMPENLLVNLNESKELVQDLLKTL
PQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQTQLPTLGVGALKPREEPNHRSSAK
DIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQ
HNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPD
AGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQA
ISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPGLMVPFSLRLFPLF
VLALLKQGALNISDRTIPQPPILQLSVEKLSRDGAFLMDAGS

>gi568815593r:134506953_134724019|GENSCAN_predicted_CDS_4|2106_bp
atggtaatcttcacaaaacccgaggagaggaactgtcagtcccaccccacgaaagcggct
actgaatctcagattgccccacgatcctggctctgcgagcgaggtcacgttcacaacggc
gggaatttccgtagcggtgacacacggcacttccggccggcccagtggtctttcagctct
cttcttgtgcgctgttgtcgaccccgaccagccccttccaacccagtcatcatgtcccag
ccgggaataccggcctccggcggcgccccagccagcctccaggcccagaacggagccgcc
ttggcctcggggtctccctacaccaacggagctcctcatgggccccctccagctggaggc
ccacccccagtgagggccctcacgcccctgacatcatcatatagagatgtaccccagccc
ttatttaattcagctgtcaaccaagaaggtattacatcaaataccaataacggatctatg
gtggtccacagtagttacgacgagattgaaggaggtggcttattggaacacaacaccacc
tggtgcaactggagtaccaccctcttccttgaattacccaagtgggccacaagcctttac
tcaggtgctaatcatttaaccacaagcatgagtggattaagtctacaaccagagggtcta
agagttgtcaatcttcttcaagaaagaaacatgcttccgtcaacacctttgaagcctcca
gttccaaatttgcatgaagacatccagaaactcaactgtaacccagagttatttcgatgc
acgctgactagcattcctcagacgcaggccttattgaataaagccaaacttcctttgggg
ctgctgcttcatcctttcaaagacttagtgcaattgcctgtggttacctccagtacaatt
gtgagatgccgttcatgcaggacgtacatcaatcctttcgtcagctttcttgatcaaagg
agatggaagtgtaacttatgttatcgagtcaatgatgatgtttttatacctatgccagag
aacttattagtaaacttaaatgaaagtaaagagctcgtgcaagatttactgaaaactttg
ccacaaatgtttaccaagactctggagacccagagtgccttgggtcctgcactgcaggct
gcctttaagctgatgtctccaactggtggtcgaatgtctgtctttcaaacacaactccca
actcttggagtgggagccctgaaaccacgagaggaaccaaaccacaggtcatctgctaag
gatatacacatgacaccatccactgacttctataagaaattagccttggactgttctggt
cagcaagttgctgttgacttattccttctcagtggacagtattctgatttggcttctctg
ggttgtatttctcggtattcagcaggtagtgtctattactatccctcttaccatcatcag
cacaacccagtccaagtacagaaattacagaaggaactacagagataccttactcggaag
attggctttgaggcagtcatgaggattcggtgcaccaaaggtctttccattcatactttc
catggaaacttctttgttaggtcaaccgacttactgtctttgcctaacgtcaacccagac
gctgggtatgcagtacagatgtcagtggaagagagtcttactgacactcagttggtttct
tttcagtcagcactcttgtatacatccagcaaaggcgaaagaagaattcgtgttcatact
ttgtgtttgccagtagtttcgactctgaatgatgtctttcttggagctgatgttcaagca
atttcagggttattggccaatatggctgttgacagatctatgactgccagtctgagtgac
gctcgggatgctctagtgaatgcagtcattgactccctttcagcttaccgttcttcagtc
ttaagtaaccagcagcctggactcatggttcctttttctttgcggcttttcccacttttt
gtgttggctctccttaaacagggagcactcaacatcagtgatagaaccatacctcagccc
cccattcttcagctttcagtggagaagctgagcagagatggagctttcctcatggatgca
ggctct