FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4835, 478 aa
  1>>>pF1KB4835 478 - 478 aa - 478 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4955+/-0.000878; mu= 17.3166+/- 0.053
 mean_var=71.8399+/-14.328, 0's: 0 Z-trim(106.4): 15  B-trim: 0 in 0/52
 Lambda= 0.151318
 statistics sampled from 8979 (8987) to 8979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.276), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS11030.1 SHPK gene_id:23729|Hs108|chr17         ( 478) 3185 704.6 5.8e-203


>>CCDS11030.1 SHPK gene_id:23729|Hs108|chr17              (478 aa)
 initn: 3185 init1: 3185 opt: 3185  Z-score: 3757.3  bits: 704.6 E(32554): 5.8e-203
Smith-Waterman score: 3185; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)

               10        20        30        40        50        60
pF1KB4 MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFEPRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 YVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVETLRSSGFPVHLLPDIAEPGSVAGRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVETLRSSGFPVHLLPDIAEPGSVAGRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVLNISTSVQLAASMPSGFQPAQTPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVLNISTSVQLAASMPSGFQPAQTPDP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 TAPVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEVEESTVYSRMIQAAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TAPVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEVEESTVYSRMIQAAVQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQ
              370       380       390       400       410       420

              430       440       450       460       470        
pF1KB4 EWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAALVMLRRHLNQKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAALVMLRRHLNQKES
              430       440       450       460       470        




478 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:03:29 2016 done: Sat Nov  5 06:03:29 2016
 Total Scan time:  3.250 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]