GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:58:36

Sequence gi568815597f:28159848_28380799 : 220952 bp : 46.35% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.15 PlyA -    451    446    6                               1.05
 1.14 Term -   4617   4447  171  0  0   69   33   110 0.178   1.43
 1.13 Intr -  14276  14250   27  2  0   96   70    41 0.230   1.41
 1.12 Intr -  15754  15621  134  2  2  103   54    23 0.145   0.76
 1.11 Intr -  17021  16919  103  2  1  110   25    72 0.214   2.85
 1.10 Intr -  37887  37802   86  1  2   71   80    86 0.489   5.64
 1.09 Intr -  41523  41409  115  0  1   98   92   171 0.987  18.52
 1.08 Intr -  43975  43900   76  0  1   92   84    82 0.998   7.72
 1.07 Intr -  45502  45411   92  1  2   66   83    50 0.989   1.09
 1.06 Intr -  48566  48495   72  2  0   60  105    57 0.945   4.20
 1.05 Intr -  50219  50125   95  0  2    5   93   137 0.971   5.58
 1.04 Intr -  50790  50724   67  0  1   90   63    52 0.950   1.38
 1.03 Intr -  55149  55093   57  0  0   63   92    44 0.452   1.38
 1.02 Intr -  69176  69075  102  2  0   71   83    20 0.127   0.17
 1.01 Init -  73151  73074   78  2  0   92   51    66 0.268   4.37
 1.00 Prom -  73599  73560   40                              -5.76

 2.00 Prom +  74055  74094   40                             -10.05
 2.01 Init +  76337  76423   87  1  0   87  101   163 0.914  16.29
 2.02 Intr +  76514  76605   92  1  2   93   93   120 0.913  11.79
 2.03 Term +  77990  78131  142  2  1   65   42   183 0.999   8.80
 2.04 PlyA +  78234  78239    6                               1.05

 3.00 Prom +  80990  81029   40                              -9.16
 3.01 Init +  84791  84840   50  1  2   91   95     6 0.401   2.10
 3.02 Intr +  93562  93703  142  1  1   62   73    53 0.499   1.56
 3.03 Intr +  99637  99888  252  0  0   25  -30   316 0.944  11.13
 3.04 Intr +  99896 100090  195  1  0    1   99   281 0.835  20.11
 3.05 Intr + 108011 108235  225  1  0  116   75    81 0.865   7.78
 3.06 Intr + 109336 109401   66  0  0   94   99    76 0.992   8.40
 3.07 Intr + 111827 112024  198  1  0   92   89   248 0.988  24.85
 3.08 Intr + 112437 112619  183  2  0   83   61   266 0.789  23.38
 3.09 Intr + 112734 112946  213  2  0  149   98   225 0.999  28.51
 3.10 Intr + 113511 113661  151  2  1   47   92   344 0.999  30.44
 3.11 Intr + 114193 114311  119  2  2  110   91   133 0.996  15.98
 3.12 Intr + 114978 115168  191  2  2   68   99   316 0.968  29.08
 3.13 Intr + 119178 119394  217  0  1  119   86   188 0.726  20.21
 3.14 Term + 120869 120955   87  1  0  109   41   180 0.999  13.06
 3.15 PlyA + 122615 122620    6                               1.05

 4.00 Prom + 165349 165388   40                              -3.16
 4.01 Init + 169095 169148   54  2  0   79   68    54 0.778   3.80
 4.02 Intr + 170750 170888  139  1  1   69  110   137 0.788  14.04
 4.03 Term + 174570 175123  554  1  2  122   42   553 0.994  48.58
 4.04 PlyA + 175983 175988    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:28159848_28380799|GENSCAN_predicted_peptide_1|424_aa
MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFE
VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRAL
DVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKER
EAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRT
FLRPPKVKMEQLEQIGSPAVEPTAGKRTFVGRGEVEGASQLLASGAVYTPPHPSLFEKPL
CSAQVLAAQLGSSCGGPDMGLCTHSLVKYDRTSRLSPHTSGCSPLALTEYPAVFQVFGVH
DESGEKPLSKEYLDPRECAHLECGVPPPSPLLVLALLVNAPSGLRGCKELLVQELWMNLD
VSYL

>gi568815597f:28159848_28380799|GENSCAN_predicted_CDS_1|1275_bp
atggcggcttcaggagagagcgggacttcaggcggcggaggcagcaccgaggaagcattt
atgaccttctacagtgaggtgaaacaaatagagaagagagactcggttctaacttcgaaa
aatcagattgaaagactgacccgtcctggttcctcttacttcaatttgaacccatttgag
gttcttcagatagatcctgaagttacagatgaagaaataaaaaagaggtttcggcagtta
tccatcttggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaaggctttt
gaagctgtggacaaagcttacaagttgctactggatcaggagcaaaagaagagggccctg
gatgtaattcaggcaggaaaagaatacgtggaacacactgtgaaagagcgaaaaaaacaa
ttaaagaaggaaggaaaacctacaattgtagaggaggatgatcctgagctgttcaaacaa
gctgtatataaacagacaatgaaactctttgcagagctggaaattaaaaggaaagagaga
gaagccaaagagatgcatgaaaggaaacgacaaagggaagaagagattgaagctcaagaa
aaagccaaacgggaaagagagtggcagaaaaactttgaggaaagtcgagatggtcgtgtg
gacagctggcgaaacttccaagccaatacgaaggggaagaaagagaagaaaaatcggacc
ttcctgagaccaccgaaagtaaaaatggagcaactggagcagataggctccccagctgtg
gagccaactgctggcaagaggacctttgtgggcagaggtgaggtggaaggagccagccag
ctcctggcctcgggcgctgtctacaccccaccccatccctcgctctttgagaagcctctg
tgcagtgcccaggtcctggcggcccagcttggaagttcctgtggaggtccagacatgggg
ctgtgcactcactcacttgtgaaatatgacagaaccagcaggctctctccccacacctct
ggctgctctcctttagctctgactgaatacccagctgtgttccaggtgtttggggtgcat
gatgagagcggggagaagcctctgagcaaggagtacttggatccaagagagtgtgcccac
ttggaatgtggtgttcccccgccttcaccacttctagtccttgccctgttggtgaatgca
ccctcaggcctgcggggctgcaaggaactgctggtgcaggagctgtggatgaacttggat
gtatcttatttatag

>gi568815597f:28159848_28380799|GENSCAN_predicted_peptide_2|106_aa
MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD

>gi568815597f:28159848_28380799|GENSCAN_predicted_CDS_2|321_bp
atggcagtgacggcgttggcggcgcggacgtggcttggcgtgtggggcgtgaggaccatg
caagcccgaggcttcggctcggatcagtccgagaatgtcgaccggggcgcgggctccatc
cgggaagccggtggggccttcggaaagagagagcaggctgaagaggaacgatatttccga
gcacagagtagagaacaactggcagctttgaaaaaacaccatgaagaagaaatcgttcat
cataagaaggagattgagcgtctgcagaaagaaattgagcgccataagcagaagatcaaa
atgctaaaacatgatgattaa

>gi568815597f:28159848_28380799|GENSCAN_predicted_peptide_3|762_aa
MTLSNSFELKLLQGPGRKAERREEAAVEKLKPSIVCFMRLKERSLLNNRKIQGEAAHADG
EAAARAELLVSEPGERWQFRGGDAEERWVREQPWPLRTSEAVKTPALRPFPGPRGRSPFP
KPDWGKSPAPKRPFSDSGAFWSPERRPGKLPGGAQSRLHSGVPPKPTRVHGSSASRDRVL
ARTMIVADSECRAELKDYLRFAPGGVGDSGPGETSMNDLALLSTKCDLVSGKQNRQFDDS
VFRSKSPGNFGVIGEGQKKVPRLLWFSFAKGVTTGTGPVVSGSPWEGEEQRESRARRGPR
GPSAFIPVEEVLREGAESLEQHLGLEALMSSGRVDNLAVVMGLHPDYFTSFWRLHYLLLH
TDGPLASSWRHYIAIMAAARHQCSYLVGSHMAEFLQTGGDPEWLLGLHRAPEKLRKLSEI
NKLLAHRPWLITKEHIQALLKTGEHTWSLAELIQALVLLTHCHSLSSFVFGCGILPEGDA
DGSPAPQAPTPPSEQSSPPSRDPLNNSGGFESARDVEALMERMQQLQESLLRDEGTSQEE
MESRFELEKSESLLVTPSADILEPSPHPDMLCFVEDPTFGYEDFTRRGAQAPPTFRAQDY
TWEDHGYSLIQRLYPEGGQLLDEKFQAAYSLTYNTIAMHSGVDTSVLRRAIWNYIHCVFG
IRVGLRGGSCLWEESMSNAAGTFPSRYDDYDYGEVNQLLERNLKVYIKTVACYPEKTTRR
MYNLFWRHFRHSEKVHVNLLLLEARMQAALLYALRAITRYMT

>gi568815597f:28159848_28380799|GENSCAN_predicted_CDS_3|2289_bp
atgaccctgtccaacagttttgaactcaagttgctacaggggccaggcaggaaagctgag
agacgtgaggaagctgctgtagaaaagcttaaacctagcatagtttgcttcatgaggttg
aaagaaagaagccttctcaataacagaaaaatacaaggtgaagcagcccatgctgatgga
gaagctgctgcacgggctgaactgctggtgtcagagcccggcgagcgctggcagttccgc
ggcggggatgctgaggagcgctgggtccgggagcagccctggcccctgcggacttccgag
gccgtgaaaacccctgcgctgcggcccttcccaggcccccgaggccgttcgccgttcccg
aagcccgactgggggaagagtccagcaccaaagcggccgttctcggattccggagcgttc
tggagccccgagagacgccccgggaagctccccggcggcgcccagtcccggcttcattcg
ggcgtccctccgaaacccactcgggtgcacgggtcgtcggcgagccgcgaccgggtcctg
gcgcgcaccatgatcgtggcggactccgagtgccgcgcagagctcaaggactacctgcgg
ttcgccccgggcggcgtcggcgactcgggccccggagagactagtatgaatgacctggcg
ctgctctccactaaatgtgatctggtgtcagggaaacaaaacagacaatttgatgacagt
gtttttagaagcaaaagccctgggaattttggggtcataggtgagggccagaaaaaggtt
cctagactattgtggtttagctttgcaaaaggagtgaccactgggactgggccagttgta
tctggaagcccatgggagggggaggagcagagggagagccgggctcggcgaggccctcga
gggcccagcgccttcatccccgtggaggaggtccttcgggagggggctgagagcctcgag
cagcacctggggctggaggcactgatgtcctctgggcgagtagacaacctggcagtggtg
atgggcctgcaccctgactactttaccagcttctggcgcctgcactacctgctgctgcac
acggatggtcccttggccagctcctggcgccactacattgccatcatggctgccgcccgc
catcagtgttcttacctggtaggctcccacatggccgagtttctgcagactggtggtgac
cctgagtggctgctgggcctccaccgggcccccgagaagctgcgcaaactcagcgagatc
aacaagttgctggcgcatcggccatggctcatcaccaaggaacacatccaggccttgctg
aagaccggcgagcacacttggtccctggccgagctcattcaggctctggtcctgctcacc
cactgccactcgctctcctccttcgtgtttggctgtggcatcctccctgagggggatgca
gatggcagccctgccccccaggcacctacaccccctagtgaacagagcagccccccaagc
agggacccgttgaacaactctgggggctttgagtctgcccgcgacgtggaggcgctgatg
gagcgcatgcagcagctgcaggagagcctgctgcgggatgaggggacgtcccaggaggag
atggagagccgctttgagctggagaagtcagagagcctgctggtgaccccctcagctgac
atcctggagccctctccacacccagacatgctgtgctttgtggaagaccctactttcgga
tatgaggacttcactcggagaggggctcaggcaccccctaccttccgggcccaggattat
acctgggaagaccatggctactcgctgatccagcggctttaccctgagggtgggcagctg
ctggatgagaagttccaggcagcctatagcctcacctacaataccatcgccatgcacagt
ggtgtggacacctccgtgctccgcagggccatctggaactatatccactgcgtctttggc
atcagggtggggttgcggggagggagctgcctttgggaagaaagcatgagtaatgctgct
gggacctttccatccagatatgatgactatgattatggggaggtgaaccagctcctggag
cggaacctcaaggtctatatcaagacagtggcctgctacccagagaagaccacccgaaga
atgtacaacctcttctggaggcacttccgccactcagagaaggtccacgtgaacttgctg
ctcctggaggcgcgcatgcaagccgctctgctgtacgccctccgtgccatcacccgctac
atgacctga

>gi568815597f:28159848_28380799|GENSCAN_predicted_peptide_4|248_aa
MKLFGLLGTHTFGNGSFEVYPVPYLTGGSESSCVVFNLDTMEAPPVTMMPVTGGTINMME
YLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLKGQQASPFVLRARRSMDRAG
APWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGI
MKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLE
KIDPKRLM

>gi568815597f:28159848_28380799|GENSCAN_predicted_CDS_4|747_bp
atgaagctcttcggccttctcggcacccatacgtttgggaacggcagtttcgaggtatat
cccgtgccttacctgactgggggctctgagtccagttgtgttgtcttcaacttagacacc
atggaggcacctccagtcaccatgatgcctgtcactgggggcaccattaacatgatggag
tacctgttgcagggaagtgttttagatcacagtttggaaagcctcatccaccgccttcgt
ggtttgtgtgacaacatggaacctgagactttccttgaccatgagatggtattcctcctt
aagggccagcaagccagcccatttgttctcagggcccgacgctctatggacagggcaggg
gcaccctggcatctgcgctacctgggacagccagaaatgggagacaagaaccgccatgcc
ctggtgcgaaactgcgtggacattgccacatctgagaacctcaccgacttcttgatggaa
atgggcttccgcatggaccatgagtttgttgctaagggacatttgttccgtaagggcatc
atgaagattatggtgtacaagattttccgcatcctggtgccagggaacacagacagcact
gaggccttgtcactctcctatctcgtggaattaagtgtggtagcacccgctgggcaggac
atggtctctgatgacatgaagaacttcgcagaacagctaaaacctctggttcacctagag
aaaatagaccccaagaggctcatgtga