Result of FASTA (ccds) for pF1KB4508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4508, 389 aa
  1>>>pF1KB4508 389 - 389 aa - 389 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5019+/-0.00102; mu= 16.0868+/- 0.061
 mean_var=71.1353+/-14.745, 0's: 0 Z-trim(104.4): 21  B-trim: 0 in 0/49
 Lambda= 0.152066
 statistics sampled from 7879 (7889) to 7879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS11925.1 SLC14A1 gene_id:6563|Hs108|chr18       ( 389) 2629 586.1 1.8e-167
CCDS45860.1 SLC14A1 gene_id:6563|Hs108|chr18       ( 445) 2629 586.2  2e-167
CCDS82252.1 SLC14A1 gene_id:6563|Hs108|chr18       ( 284) 1912 428.7 3.1e-120
CCDS77181.1 SLC14A1 gene_id:6563|Hs108|chr18       ( 257) 1751 393.4 1.2e-109
CCDS11924.1 SLC14A2 gene_id:8170|Hs108|chr18       ( 920) 1729 388.9  1e-107


>>CCDS11925.1 SLC14A1 gene_id:6563|Hs108|chr18            (389 aa)
 initn: 2629 init1: 2629 opt: 2629  Z-score: 3120.2  bits: 586.1 E(32554): 1.8e-167
Smith-Waterman score: 2629; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KB4 MEDSPTMVRVDSPTMVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEDSPTMVRVDSPTMVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 WILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 LYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 NMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLACIAMGGM
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS11 TGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLACIAMGGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 FMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIY
              310       320       330       340       350       360

              370       380         
pF1KB4 KMPLSKVTYPEENRIFYLQAKKRMVESPL
       :::::::::::::::::::::::::::::
CCDS11 KMPLSKVTYPEENRIFYLQAKKRMVESPL
              370       380         

>>CCDS45860.1 SLC14A1 gene_id:6563|Hs108|chr18            (445 aa)
 initn: 2629 init1: 2629 opt: 2629  Z-score: 3119.3  bits: 586.2 E(32554): 2e-167
Smith-Waterman score: 2629; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:57-445)

                                             10        20        30
pF1KB4                               MEDSPTMVRVDSPTMVRGENQVSPCQGRRC
                                     ::::::::::::::::::::::::::::::
CCDS45 AGDAARRGIARLSLALADGSQEQEPEEEIAMEDSPTMVRVDSPTMVRGENQVSPCQGRRC
         30        40        50        60        70        80      

               40        50        60        70        80        90
pF1KB4 FPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNP
         90       100       110       120       130       140      

              100       110       120       130       140       150
pF1KB4 WWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPV
        150       160       170       180       190       200      

              160       170       180       190       200       210
pF1KB4 CAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAP
        210       220       230       240       250       260      

              220       230       240       250       260       270
pF1KB4 NISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAA
        270       280       290       300       310       320      

              280       290       300       310       320       330
pF1KB4 GLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFM
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLSLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFM
        330       340       350       360       370       380      

              340       350       360       370       380         
pF1KB4 AEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
        390       400       410       420       430       440     

>>CCDS82252.1 SLC14A1 gene_id:6563|Hs108|chr18            (284 aa)
 initn: 1912 init1: 1912 opt: 1912  Z-score: 2272.1  bits: 428.7 E(32554): 3.1e-120
Smith-Waterman score: 1912; 99.6% identity (100.0% similar) in 284 aa overlap (106-389:1-284)

          80        90       100       110       120       130     
pF1KB4 VSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAV
                                     ::::::::::::::::::::::::::::::
CCDS82                               MALLLSQDRSLIASGLYGYNATLVGVLMAV
                                             10        20        30

         140       150       160       170       180       190     
pF1KB4 FSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYN
               40        50        60        70        80        90

         200       210       220       230       240       250     
pF1KB4 PFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPL
              100       110       120       130       140       150

         260       270       280       290       300       310     
pF1KB4 MCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGC
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS82 MCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGC
              160       170       180       190       200       210

         320       330       340       350       360       370     
pF1KB4 ALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRI
              220       230       240       250       260       270

         380         
pF1KB4 FYLQAKKRMVESPL
       ::::::::::::::
CCDS82 FYLQAKKRMVESPL
              280    

>>CCDS77181.1 SLC14A1 gene_id:6563|Hs108|chr18            (257 aa)
 initn: 1751 init1: 1751 opt: 1751  Z-score: 2081.9  bits: 393.4 E(32554): 1.2e-109
Smith-Waterman score: 1751; 99.6% identity (100.0% similar) in 257 aa overlap (133-389:1-257)

            110       120       130       140       150       160  
pF1KB4 STLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSS
                                     ::::::::::::::::::::::::::::::
CCDS77                               MAVFSDKGDYFWWLLLPVCAMSMTCPIFSS
                                             10        20        30

            170       180       190       200       210       220  
pF1KB4 ALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALEL
               40        50        60        70        80        90

            230       240       250       260       270       280  
pF1KB4 LKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS77 LKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIY
              100       110       120       130       140       150

            290       300       310       320       330       340  
pF1KB4 FGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPF
              160       170       180       190       200       210

            350       360       370       380         
pF1KB4 CLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
              220       230       240       250       

>>CCDS11924.1 SLC14A2 gene_id:8170|Hs108|chr18            (920 aa)
 initn: 3497 init1: 1721 opt: 1729  Z-score: 2047.5  bits: 388.9 E(32554): 1e-107
Smith-Waterman score: 1729; 62.3% identity (87.9% similar) in 387 aa overlap (1-383:524-906)

                                                10        20       
pF1KB4                               MEDSPTM---VRVDSPTMVRGENQVSPCQG
                                     ::.:  .   . ... . .:.   .:   :
CCDS11 GKGEHQERQNKDPFPYRYRKPTVELLDLDTMEESSEIKVETNISKTSWIRSSMAAS---G
           500       510       520       530       540          550

        30        40        50        60        70        80       
pF1KB4 RRCFPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLV
       .:   :::.:.::.::: .. ::::  :.::.::.::: :::.:::::.:::::..::..
CCDS11 KRV-SKALSYITGEMKECGEGLKDKSPVFQFFDWVLRGTSQVMFVNNPLSGILIILGLFI
               560       570       580       590       600         

        90       100       110       120       130       140       
pF1KB4 QNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLL
       ::::::..: :::..::: ::.::::.: ::.:..:::..:::.:::::::::::.::::
CCDS11 QNPWWAISGCLGTIMSTLTALILSQDKSAIAAGFHGYNGVLVGLLMAVFSDKGDYYWWLL
     610       620       630       640       650       660         

       150       160       170       180       190       200       
pF1KB4 LPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPIT
       :::  :::.:::.::::....:::::::::::::.....::.:::::: :::. :. : .
CCDS11 LPVIIMSMSCPILSSALGTIFSKWDLPVFTLPFNITVTLYLAATGHYNLFFPTTLLQPAS
     670       680       690       700       710       720         

       210       220       230       240       250       260       
pF1KB4 TAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLG
       . :::.::....  ::..::::.::.::::::::::::: :...::::.:::::::: .:
CCDS11 AMPNITWSEVQVPLLLRAIPVGIGQVYGCDNPWTGGIFLIALFISSPLICLHAAIGSTMG
     730       740       750       760       770       780         

       270       280       290       300       310       320       
pF1KB4 IAAGLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMA
       . :.:....::..::::: ::::.:::::.::::...::::::::..::::.::::...:
CCDS11 MLAALTIATPFDSIYFGLCGFNSTLACIAIGGMFYVITWQTHLLAIACALFAAYLGAALA
     790       800       810       820       830       840         

       330       340       350       360       370        380      
pF1KB4 NFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYL-QAKKRMVE
       :...  ::: :::::::..: ::..::.:  :::.::::::::: :::.:: : ..:   
CCDS11 NMLSVFGLPPCTWPFCLSALTFLLLTTNNPAIYKLPLSKVTYPEANRIYYLSQERNRRAS
     850       860       870       880       890       900         

                  
pF1KB4 SPL        
                  
CCDS11 IITKYQAYDVS
     910       920

>--
 initn: 1822 init1: 1681 opt: 1696  Z-score: 2008.3  bits: 381.6 E(32554): 1.5e-105
Smith-Waterman score: 1696; 65.0% identity (88.5% similar) in 357 aa overlap (27-381:85-441)

                   10        20        30          40        50    
pF1KB4     MEDSPTMVRVDSPTMVRGENQVSPCQGRRC--FPKALGYVTGDMKELANQLKDKPV
                                     :.::  . ::.::.::::::    :::: .
CCDS11 SNEDSHIVKIEKLNERSKRKDDGVAHRDSAGQRCICLSKAVGYLTGDMKEYRIWLKDKHL
           60        70        80        90       100       110    

           60        70        80        90       100       110    
pF1KB4 VLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDR
       .::::::.::: .::.:.:::.::..:..:::.:::::..:: :::::::: :: :.:::
CCDS11 ALQFIDWVLRGTAQVMFINNPLSGLIIFIGLLIQNPWWTITGGLGTVVSTLTALALGQDR
          120       130       140       150       160       170    

          120       130       140       150       160       170    
pF1KB4 SLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLP
       : :::::.:::. :::.::::::.: ::.::::.::   .:.::..::::::..::::::
CCDS11 SAIASGLHGYNGMLVGLLMAVFSEKLDYYWWLLFPVTFTAMSCPVLSSALNSIFSKWDLP
          180       190       200       210       220       230    

          180       190       200       210       220       230    
pF1KB4 VFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIY
       :::::::.:...::.:::::: :::. :: :....:::.:...    ::..:::::::.:
CCDS11 VFTLPFNIAVTLYLAATGHYNLFFPTTLVEPVSSVPNITWTEMEMPLLLQAIPVGVGQVY
          240       250       260       270       280       290    

          240       250       260       270       280       290    
pF1KB4 GCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLAC
       :::::::::.:: :...::::.::::::::..:. :.::...:::.:: :::..:  :.:
CCDS11 GCDNPWTGGVFLVALFISSPLICLHAAIGSIVGLLAALSVATPFETIYTGLWSYNCVLSC
          300       310       320       330       340       350    

          300       310       320       330       340       350    
pF1KB4 IAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTT
       ::.::::.::::::::::: :::: ::. ....:.:. ::.:  :: :::::..::..::
CCDS11 IAIGGMFYALTWQTHLLALICALFCAYMEAAISNIMSVVGVPPGTWAFCLATIIFLLLTT
          360       370       380       390       400       410    

          360       370       380                                  
pF1KB4 KNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL                         
       .:  :...::::::::: :::.:: .:                                 
CCDS11 NNPAIFRLPLSKVTYPEANRIYYLTVKSGEEEKAPSGGGGEHPPTAGPKVEEGSEAVLSK
          420       430       440       450       460       470    




389 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:52:54 2016 done: Sat Nov  5 05:52:54 2016
 Total Scan time:  2.810 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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