FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4156, 142 aa
  1>>>pF1KB4156 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0405+/-0.000282; mu= 13.5122+/- 0.018
 mean_var=70.4749+/-13.987, 0's: 0 Z-trim(119.1): 6  B-trim: 0 in 0/52
 Lambda= 0.152777
 statistics sampled from 32667 (32671) to 32667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.383), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(85289)
NP_751917 (OMIM: 611847) 39S ribosomal protein L42 ( 142) 1015 231.7   3e-61
NP_054769 (OMIM: 611847) 39S ribosomal protein L42 ( 142) 1015 231.7   3e-61


>>NP_751917 (OMIM: 611847) 39S ribosomal protein L42, mi  (142 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1220.7  bits: 231.7 E(85289): 3e-61
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB4 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
               70        80        90       100       110       120

              130       140  
pF1KB4 HRWYPHGRYHRCRKNLNPPKDR
       ::::::::::::::::::::::
NP_751 HRWYPHGRYHRCRKNLNPPKDR
              130       140  

>>NP_054769 (OMIM: 611847) 39S ribosomal protein L42, mi  (142 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1220.7  bits: 231.7 E(85289): 3e-61
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB4 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
               70        80        90       100       110       120

              130       140  
pF1KB4 HRWYPHGRYHRCRKNLNPPKDR
       ::::::::::::::::::::::
NP_054 HRWYPHGRYHRCRKNLNPPKDR
              130       140  




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:40:04 2016 done: Sat Nov  5 05:40:05 2016
 Total Scan time:  4.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]