GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:40:24

Sequence gi568815586f:93369286_93601218 : 231933 bp : 41.48% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1791   1946  156  2  0   62   67   104 0.358   4.99
 1.02 Intr +   8842   9136  295  0  1   17   75   225 0.027   9.76
 1.03 Intr +   9323   9408   86  0  2   68   96    29 0.031   0.32
 1.04 Intr +  25231  25434  204  0  0   55   78   166 0.394  10.77
 1.05 Intr +  29483  29570   88  1  1   38  111    65 0.517   2.42
 1.06 Term +  29892  30094  203  1  2   98   44    85 0.893   1.67
 1.07 PlyA +  30257  30262    6                              -0.45

 2.08 PlyA -  30420  30415    6                               1.05
 2.07 Term -  30500  30448   53  0  2   96   43    56 0.008  -1.49
 2.06 Intr -  41589  41449  141  1  0   82   70   142 0.758  11.20
 2.05 Intr -  42014  41768  247  2  1   98  115   242 0.999  24.01
 2.04 Intr -  72518  72416  103  1  1   91   20    76 0.009   0.36
 2.03 Intr -  74018  73960   59  2  2   86   96    25 0.010  -0.14
 2.02 Intr -  79962  79882   81  0  0  127   59    32 0.294   3.12
 2.01 Init -  84550  84545    6  1  0   72  131     9 0.702   4.03
 2.00 Prom -  86210  86171   40                              -7.15

 3.04 PlyA -  86638  86633    6                               1.05
 3.03 Term -  98686  98265  422  2  2    3   49   223 0.225   4.37
 3.02 Intr - 101488 101402   87  2  0   64   82    53 0.253   1.32
 3.01 Init - 107432 107315  118  2  1   35   69   157 0.932   8.91
 3.00 Prom - 116178 116139   40                              -4.35

 4.00 Prom + 124722 124761   40                              -2.85
 4.01 Sngl + 127766 128071  306  1  0   49   43   238 0.992  11.02
 4.02 PlyA + 128148 128153    6                               1.05

 5.00 Prom + 135340 135379   40                              -5.15
 5.01 Init + 136830 136922   93  2  0   86   84    23 0.234   0.13
 5.02 Intr + 140618 140736  119  1  2   71   82    27 0.275  -1.26
 5.03 Intr + 147978 148100  123  0  0   64  103    57 0.530   3.58
 5.04 Term + 152168 152546  379  2  1   81   52   162 0.622   5.18
 5.05 PlyA + 152617 152622    6                               1.05

 6.02 PlyA - 154176 154171    6                               1.05
 6.01 Sngl - 160588 160139  450  1  0   16   49   277 0.741  12.56
 6.00 Prom - 162733 162694   40                              -5.25

 7.00 Prom + 163263 163302   40                              -6.05
 7.01 Init + 165965 166037   73  1  1   86   33    83 0.071   3.88
 7.02 Intr + 195232 195321   90  2  0  111   98    35 0.638   5.85
 7.03 Intr + 201113 201257  145  0  1  100   21   188 0.134  11.72
 7.04 Intr + 202288 202342   55  1  1  127   27    55 0.056   1.36
 7.05 Intr + 203511 203751  241  2  1   81   91    83 0.007   4.10
 7.06 Term + 205437 205894  458  1  2   30   36   385 0.014  21.80
 7.07 PlyA + 206143 206148    6                               1.05

 8.00 Prom + 208714 208753   40                              -5.95
 8.01 Init + 222109 222529  421  0  1   67   -9   313 0.442  14.19

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   9564   9633   70  0  1   78   47   129 0.878   4.23
S.002 Term +  60311  60451  141  1  0    1   47   234 0.870   7.55
S.003 Term +  72863  73135  273  1  0   37   51   231 0.838   8.79
S.004 Term +  88645  88776  132  0  0  131   49    70 0.800   4.51
S.005 Term - 114883 114683  201  1  0   61   38   138 0.835   2.51
S.006 Term + 203400 203602  203  1  2  123   46   158 0.875  11.67


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_1|343_aa
LSGSSLNPVCLRNLHSVSIPSPRVWGGTLSGMRVLGITIGKVEKDYSPTLEQRPVPPASE
RPPAPGLTGLAAPPAPTSAPGRSCARLALAPTPRRGGGGRAPTAAAGAAAAAAGARLYDE
VQAQPDADLRPRGLQEAGGVPVLPERAGGRDETKGARPAPVSPSGHSRRRLVPGKVPGRN
RVITLQRFENVVYIRSASQAGSIQLWFTLQVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA
VREVYEEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHA
EYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_1|1032_bp
ctatctggaagctctctgaacccagtgtgtttacggaatcttcatagtgttagcattcct
tcccccagggtatggggcggaaccctctctggaatgagggtcttaggaatcacaatcgga
aaggtggagaaagattacagtcctaccttggagcagcgtcccgtcccgcccgcgtcggag
cggccgccggccccgggactgaccggcctcgccgcacctcccgcaccgactagcgctccc
gggcgctcctgcgcccgactcgccctcgcccccactccccggcggggtggcggcggccgg
gcccccacggcggcggccggagcagcagcagcagcagcaggagcccgcctctatgatgaa
gttcaagcccaaccagacgcggacctacgaccgcgagggcttcaagaagcgggcggcgtg
cctgtgcttccggagcgagcaggaggacgagatgagacaaagggggctcgcccagcccca
gtttctccatctgggcactcgagaaggcgcctggtccccgggaaggtcccgggccgcaat
agagttataaccttgcagaggtttgagaatgttgtttatatacgaagtgcttctcaggct
ggaagtatacagttatggttcaccttacaggtgctgctggtgagtagcagccggtaccca
gaccagtggattgtcccaggaggaggaatggaacccgaggaggaacctggcggtgctgcc
gtgagggaagtttatgaggagcagaaccaagaccgaaagcacagaacatatgtttatgtt
ctaacagtcactgaaatattagaagattgggaagattctgttaatattggaaggaagaga
gagtggttcaaagtagaagatgctatcaaagttctccagtgtcataaacctgtacatgca
gagtatctggaaaagctaaagctgggttgttccccagccaatggaaattctacagtccct
tcccttccggataataatgccttgtttgtaaccgctgcacagacctctgggttgccatct
agtgtaagatag

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_2|229_aa
MPIASDIIEKHGRNQSDLRQTGDGEGGRKLNAISQAISYAWHTLPYKVSWAGSAASRLLR
PAARSGRPEAARRGVGRGGEGSRETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPF
EGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLS
IQALLSAPNPDDPLANDVAEQWKTNEAQAIETDGFAEYANAVNEKTILG

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_2|690_bp
atgccgatagcaagtgacataatagagaaacatgggagaaatcaatcagacttgagacag
acaggtgatggtgaaggaggaagaaagctcaatgccatttcacaggccatttcctatgct
tggcatactcttccctacaaggtcagctgggcaggcagcgcggcctctcgcctccttcgg
cccgcggcccgctctgggaggcccgaggcggcgcggagaggggttggccgcggcggcgag
ggaagtcgggaaacccagcgtttgctggcagaaccagttcctggcatcaaagccgaacca
gatgagagcaacgcccgttattttcatgtggtcattgctggccctcaggattcccccttt
gagggagggacttttaaacttgaactattccttccagaagaatacccaatggcagcccct
aaagtacgtttcatgaccaaaatttatcatcctaatgtagacaagttgggaagaatatgt
ttagatattttgaaagataagtggtccccagcactgcagatccgcacagttctgctatcg
atccaggccttgttaagtgctcccaatccagatgatccattagcaaatgatgtagcggag
cagtggaagaccaacgaagcccaagccatagaaacagatggatttgctgaatatgctaat
gctgtgaatgagaaaacaattttggggtag

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_3|208_aa
MVNIGKDGPHRKATKQIVQVQESLFSGDDVQGALKNEKITTQMQLEAIILSELMQKQPNT
TCSNLQVGAQRKARPAGSQIIHPRKIISEIKSLSPEFNPKTKATEPLRVRGLRNRLPRAP
ELFDLKESLEPQAASPPHGRPPGNKGGAIRNAQPHAGSSAGRTKAGDAGNLALPGTTGGR
PLQLPTNTVGLPSFEEVLDRRSRGKRLP

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_3|627_bp
atggtaaacattggcaaagatgggccacacagaaaggctaccaaacaaattgtgcaggtt
caagaaagccttttcagtggagatgatgtccaaggtgctctgaagaatgagaaaataaca
acacagatgcagctggaggccattatcctaagtgaattaatgcaaaaacagccaaatact
acatgttctaacttacaagtaggagcccagagaaaagcacgccctgctgggagtcagatt
attcaccccaggaagatcatttcagagatcaagtccctcagcccggaattcaaccccaaa
acaaaagctacagagcctctgagggtcagaggtttgaggaacaggctaccaagagcacca
gaactcttcgacctaaaggagtccctagagccacaagctgcatcacctccccacgggcgt
ccgccagggaacaaagggggcgctataagaaacgcgcagccacatgccggctcttctgca
ggaaggacaaaggctggggatgcaggcaacctcgccctgccgggaacgacaggcgggaga
cctctacaactgccgaccaacactgtgggactgcccagtttcgaggaagtcctcgacagg
aggagtagagggaagcggttaccttga

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_4|101_aa
MNSETESVIKKQQPKSSGPDRSTAEFYQMCKEPVPILLILFPQQQQQKIEEEGLLPNSFY
KNGIILIPKSDRDITEKQNYGPVSLINMDAKILNKIRANQI

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_4|306_bp
atgaattctgaaactgaatcagtaataaaaaaacaacaaccaaaaagctctggaccagac
agatccacagctgaattctaccagatgtgcaaagagccagtaccaatcctactgatacta
ttcccccaacaacaacaacaaaaaatcgaggaggaaggactcctccccaactcattctac
aaaaacggcatcatcctgatacccaaatctgacagagacataacagaaaaacaaaactat
gggccagtatccctgataaacatggatgctaaaatcctcaacaaaatacgagcaaaccaa
atctag

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_5|237_aa
MGFHHVGQAGLELLTSGDLPTLAPQNTGITRQSGTLVTIDKPTLTHHYHPKPIVSIRVHS
WCCTIYGFEQSGNWYLETKIWCSIPFKKLVCEGLWLYDHTWDWKYRGDTWLSLTLASEWG
EMCMLHSAIQGYSLLPSGSGGFPIPWGRGLLFWIEGTQPAGKEERMWKTEDHALAFNGQP
WGGGLKSLPLTSHWSEQSFMQAHRCNCKTAGNYALAVCRGRRETQTLVNVSLLGFTL

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_5|714_bp
atggggtttcaccacgttggccaggctggtcttgaactcctgacctcaggtgatctgccc
accttggccccccaaaatactgggattacaaggcagagtggcacattggttacaattgat
aaacctacactgacacatcattatcacccaaagcctattgtttccattagggttcactct
tggtgctgtacaatctatgggtttgaacaaagtggaaactggtatctagaaaccaagatc
tggtgtagtattcctttcaagaagcttgtctgtgaagggttatggctgtatgatcacacg
tgggactggaagtacagaggggatacctggctcagtctaactctggccagtgaatgggga
gaaatgtgtatgctccacagtgccattcagggatacagcctccttccaagtggtagtggt
ggcttccccattccttggggccgtgggctcctcttctggattgagggcacccagccagct
ggcaaggaagaaagaatgtggaaaacagaggatcatgcgctagctttcaatggccagccc
tggggggggggactcaaatcacttccactcacatcccattggtcagaacaaagttttatg
caagctcaccgctgcaactgcaagacagctgggaactatgctctagcggtgtgccgtgga
agaagagaaactcaaacactggtgaatgttagcttgcttggcttcactctctga

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_6|149_aa
MKDGKIKSRDFALITFESPADAKNAANDMKGKSLDGKAIQVEQANEPSFESGVRWRPPSP
SRNRGPPRCLRCGRKGSGGAKGHPSGGGHMDDGGYTLNANMSSSRTGVPSLLGTRGQFHE
RQFFYRPGVGGDGFGMKLFHLRSSGIRFS

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_6|450_bp
atgaaggatgggaaaatcaagtccagagactttgcattgattacttttgagagccctgca
gatgctaagaatgctgccaacgatatgaagggaaagtctttggatggaaaagcaattcaa
gtagagcaagccaacgaaccatcttttgaaagtggtgttaggtggagaccaccatctcct
tcgagaaacagaggccctccaagatgtctgagatgtggaagaaaaggtagtggaggagca
aaagggcatccctcaggtggaggacacatggatgatggcggatacactcttaatgccaac
atgagttcttctaggacaggggtccccagccttttgggcaccaggggccagtttcatgaa
agacaatttttctatagaccaggggtcgggggggatggtttcgggatgaaactgttccac
ctcagatcatcaggtattagattctcataa

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_7|353_aa
MVEGEGEAGMSFMAREGGGDRERGGTIVLGPGSWRLSRNFKKAKLFLVAHQSLKGPDQGD
RLRSPAVGTGTSTASPRHRCVLEPESLVSEDPQSLLHAHPPQKVAAGGKPGSSPRVEVSQ
PGLVLGFALTSRKDANPSLTPARAATCLCRGDPSLMTLRCLEPSGNGGEGTRSQWGTAGS
AEEPSPQAARLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTIS
VKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRN
GTVHLYLTKPLYTSAPSLQHLCRLTINKCTGAIWGLPLPTRLKDYLEEYKFQV

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_7|1062_bp
atggtggaaggtgaaggagaagcaggcatgtctttcatggccagagaaggaggaggagat
agagaaaggggaggtactattgttttggggccaggctcatggagattaagcaggaacttc
aagaaagccaagctcttcttggtagcacaccagagtctgaagggacctgatcaaggggac
cgcctccggtccccggccgtgggcaccgggacgagcacggcgtccccacgccatcgatgt
gtcttagagccggagagtctggtttccgaggacccacagtcgctcctgcacgcccacccc
ccgcaaaaggtcgcagccggagggaaacccggcagcagtccgagagtggaggtgtcccag
cccggactcgttttgggattcgcactgacttcaaggaaggacgcgaacccttctctgacc
ccagctcgggcggccacctgtctttgccgcggtgacccttctctcatgaccctgcggtgc
cttgagccctccgggaatggcggggaagggacgcggagccagtgggggaccgcggggtcg
gcggaggagccatccccgcaggcggcgcgtctggcgaaggccctgcgggagctcggtcag
acaggatggtactggggaagtatgactgttaatgaagccaaagagaaattaaaagaggca
ccagaaggaactttcttgattagagatagctcgcattcagactacctactaacaatatct
gttaaaacatcagctggaccaactaatcttcgaatcgaataccaagacggaaaattcaga
ttggactctatcatatgtgtcaaatccaagcttaaacaatttgacagtgtggttcatctg
atcgactactatgttcagatgtgcaaggataagcggacaggtccagaagccccccggaac
ggcactgttcacctttatctgaccaaaccgctctacacgtcagcaccatctctgcagcat
ctctgtaggctcaccattaacaaatgtaccggtgccatctggggactgcctttaccaaca
agactaaaagattacttggaagaatataaattccaggtataa

>gi568815586f:93369286_93601218|GENSCAN_predicted_peptide_8|141_aa
MGARRKRVCVRVWLSVCLSAARGISEFRLFLLEEFSNGVPAGAGSSVYDVHTLSLKREVI
LAPRGDAAEVLFVCGQGRVRSPTELWRGGSSQTRPGRRSGLPGPYVTQRRQQGAGHRLTN
VKAFHFGSAPDECGIESRRLX

>gi568815586f:93369286_93601218|GENSCAN_predicted_CDS_8|423_bp
atgggagcgaggagaaagcgtgtgtgcgttcgtgtgtggctgtctgtctgtctgtctgcg
gcaagaggaatctcagagtttcggttatttctccttgaagaattttcaaacggagttcct
gcaggggctggctctagcgtctacgatgtgcacacactgtctctcaagagggaagtgatc
ctggcgccacggggtgatgcagcagaagttctttttgtctgtggccagggtagagtgcgg
agccccacggagctgtggcgtggcggctcctcccagacgcgtccggggcgccgctcgggt
ctcccaggaccttatgtaacccagcgtcggcagcaaggagccggtcacaggctgaccaac
gtcaaggcgtttcactttggaagcgcaccagatgagtgtggtattgagagcagacggctg
gnn