Result of FASTA (omim) for
pF1KB3815
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3815, 403 aa
1>>>pF1KB3815 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4641+/-0.00035; mu= 4.5673+/- 0.022
mean_var=222.5521+/-47.027, 0's: 0 Z-trim(121.2): 64 B-trim: 2631 in 2/58
Lambda= 0.085972
statistics sampled from 37365 (37436) to 37365 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.439), width: 16
Scan time: 10.040
The best scores are: opt bits E(85289)
NP_127501 (OMIM: 608503) poly(rC)-binding protein ( 403) 2611 336.3 8e-92
XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 2611 336.3 8e-92
XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 2611 336.3 8e-92
XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 2611 336.3 8e-92
NP_127503 (OMIM: 608503) poly(rC)-binding protein ( 403) 2611 336.3 8e-92
NP_001167571 (OMIM: 608503) poly(rC)-binding prote ( 403) 2611 336.3 8e-92
XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 2611 336.3 8.3e-92
XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 2611 336.3 8.3e-92
XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 1960 255.5 1.4e-67
XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 1960 255.5 1.4e-67
XP_016862408 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 1960 255.5 1.4e-67
XP_006713334 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 346) 1960 255.5 1.4e-67
XP_006713333 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 360) 1531 202.3 1.5e-51
NP_065151 (OMIM: 608503) poly(rC)-binding protein ( 360) 1531 202.3 1.5e-51
XP_005265389 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 383) 1531 202.3 1.6e-51
NP_001122386 (OMIM: 601210) poly(rC)-binding prote ( 318) 1241 166.3 9.5e-41
NP_001123613 (OMIM: 608502) poly(rC)-binding prote ( 345) 1138 153.6 7.1e-37
NP_065389 (OMIM: 608502) poly(rC)-binding protein ( 371) 981 134.1 5.4e-31
NP_001092090 (OMIM: 601210) poly(rC)-binding prote ( 331) 928 127.5 4.8e-29
NP_001122385 (OMIM: 601210) poly(rC)-binding prote ( 335) 910 125.3 2.3e-28
XP_016862409 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 280) 880 121.5 2.6e-27
NP_001122384 (OMIM: 601210) poly(rC)-binding prote ( 361) 855 118.5 2.7e-26
NP_114366 (OMIM: 601210) poly(rC)-binding protein ( 362) 855 118.5 2.7e-26
NP_001122383 (OMIM: 601210) poly(rC)-binding prote ( 365) 837 116.2 1.3e-25
NP_005007 (OMIM: 601210) poly(rC)-binding protein ( 366) 837 116.2 1.3e-25
NP_006187 (OMIM: 601209) poly(rC)-binding protein ( 356) 797 111.3 3.9e-24
XP_016870158 (OMIM: 600712,616580) PREDICTED: hete ( 439) 342 54.9 4.4e-07
NP_001305115 (OMIM: 600712,616580) heterogeneous n ( 439) 342 54.9 4.4e-07
XP_011516918 (OMIM: 600712,616580) PREDICTED: hete ( 439) 342 54.9 4.4e-07
NP_001305116 (OMIM: 600712,616580) heterogeneous n ( 440) 342 54.9 4.4e-07
XP_005252022 (OMIM: 600712,616580) PREDICTED: hete ( 440) 342 54.9 4.4e-07
XP_005252020 (OMIM: 600712,616580) PREDICTED: hete ( 440) 342 54.9 4.4e-07
NP_112552 (OMIM: 600712,616580) heterogeneous nucl ( 463) 230 41.0 0.007
XP_016870157 (OMIM: 600712,616580) PREDICTED: hete ( 463) 230 41.0 0.007
NP_001305117 (OMIM: 600712,616580) heterogeneous n ( 463) 230 41.0 0.007
NP_002131 (OMIM: 600712,616580) heterogeneous nucl ( 464) 230 41.0 0.007
NP_112553 (OMIM: 600712,616580) heterogeneous nucl ( 464) 230 41.0 0.007
XP_005252017 (OMIM: 600712,616580) PREDICTED: hete ( 464) 230 41.0 0.007
>>NP_127501 (OMIM: 608503) poly(rC)-binding protein 4 is (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
NP_127 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bindin (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
XP_005 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bindin (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
XP_006 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bindin (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
XP_006 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>NP_127503 (OMIM: 608503) poly(rC)-binding protein 4 is (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_127 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
NP_127 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>NP_001167571 (OMIM: 608503) poly(rC)-binding protein 4 (403 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.5 bits: 336.3 E(85289): 8e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
310 320 330 340 350 360
370 380 390 400
pF1KB3 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
:::::::::::::::::::::::::::::::::::::::::::
NP_001 KPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY
370 380 390 400
>>XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bindin (426 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.2 bits: 336.3 E(85289): 8.3e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:24-426)
10 20 30
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKG
:::::::::::::::::::::::::::::::::::::
XP_016 MEAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 AIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 QLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 GNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB3 LPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAER
370 380 390 400 410 420
400
pF1KB3 QKFSPY
::::::
XP_016 QKFSPY
>>XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bindin (426 aa)
initn: 2611 init1: 2611 opt: 2611 Z-score: 1769.2 bits: 336.3 E(85289): 8.3e-92
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:24-426)
10 20 30
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKG
:::::::::::::::::::::::::::::::::::::
XP_005 MEAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 AIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 QLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 GNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB3 LPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAANGSKKAER
370 380 390 400 410 420
400
pF1KB3 QKFSPY
::::::
XP_005 QKFSPY
>>XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bindin (323 aa)
initn: 1960 init1: 1960 opt: 1960 Z-score: 1334.4 bits: 255.5 E(85289): 1.4e-67
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
:::::::
XP_016 AQYLITAWAAAGLGGLHCQDGSS
310 320
>>XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bindin (323 aa)
initn: 1960 init1: 1960 opt: 1960 Z-score: 1334.4 bits: 255.5 E(85289): 1.4e-67
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB3 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGL
:::::::
XP_016 AQYLITAWAAAGLGGLHCQDGSS
310 320
403 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:24:02 2016 done: Sat Nov 5 05:24:04 2016
Total Scan time: 10.040 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]