GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:22:06

Sequence gi568815578f:44380000_44589538 : 209539 bp : 45.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  10833  10877   45  2  0   41  100    59 0.250   3.08
 1.02 Term +  15000  15128  129  2  0   48   45   136 0.381   3.48
 1.03 PlyA +  17024  17029    6                               1.05

 2.00 Prom +  17371  17410   40                              -4.56
 2.01 Init +  21374  21488  115  1  1   51   78   178 0.482  13.47
 2.02 Intr +  26059  26233  175  2  1  100   94   324 0.998  33.20
 2.03 Intr +  27382  27476   95  1  2   23  105   186 0.711  13.41
 2.04 Intr +  33695  33801  107  0  2  122   86   161 0.526  19.23
 2.05 Intr +  34508  34663  156  1  0   44   94   314 0.999  27.81
 2.06 Intr +  38264  38317   54  1  0  131   80   -22 0.564   0.48
 2.07 Intr +  38426  38513   88  1  1  108   66   132 0.646  12.54
 2.08 Intr +  39722  39877  156  0  0   95   92   324 0.998  33.48
 2.09 Intr +  44019  44255  237  1  0  110   65   534 0.998  50.89
 2.10 Intr +  48336  48458  123  1  0  127   56   122 0.593  13.46
 2.11 Term +  49524  49666  143  1  2   99   43   123 0.396   6.99
 2.12 PlyA +  52822  52827    6                               1.05

 3.02 PlyA -  55512  55507    6                               1.05
 3.01 Sngl -  86945  86694  252  2  0   86   49   188 0.309   9.82
 3.00 Prom -  90081  90042   40                              -7.06

 4.00 Prom +  94830  94869   40                              -4.26
 4.01 Init + 100001 100445  445  1  1    6   70   653 0.974  51.48
 4.02 Intr + 104338 104531  194  2  2   55  110   116 0.977   9.71
 4.03 Intr + 106597 106707  111  0  0  117   89    63 0.999   9.88
 4.04 Term + 109264 109542  279  0  0   69   41   291 0.950  17.95
 4.05 PlyA + 113287 113292    6                               1.05

 5.12 PlyA - 114508 114503    6                               1.05
 5.11 Term - 120435 120297  139  2  1   94   46    80 0.974   1.84
 5.10 Intr - 121301 121074  228  1  0   57   91   201 0.648  14.28
 5.09 Intr - 123996 123816  181  1  1   72   97    34 0.990   1.63
 5.08 Intr - 124892 124802   91  2  1   97   95    52 0.914   6.37
 5.07 Intr - 126997 126828  170  2  2   75   80    41 0.977   1.67
 5.06 Intr - 130029 129892  138  1  0   43   82   118 0.839   7.14
 5.05 Intr - 131369 131290   80  1  2   61   91    80 0.998   4.79
 5.04 Intr - 132995 132802  194  2  2   69   71   155 0.996  10.19
 5.03 Intr - 133985 133880  106  1  1   63  116    41 0.161   4.62
 5.02 Intr - 147522 147483   40  1  1   68   92    44 0.088   0.08
 5.01 Init - 152201 151688  514  2  1   53   51   284 0.800  16.27
 5.00 Prom - 157424 157385   40                              -2.06

 6.00 Prom + 169028 169067   40                              -2.16
 6.01 Init + 190167 190182   16  2  1   83   79     5 0.447  -0.53
 6.02 Term + 196917 196978   62  1  2  104   49    88 0.856   4.47
 6.03 PlyA + 198692 198697    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  27529  27599   71  2  2   85   39    38 0.802  -3.30
S.002 Term +  45321  45466  146  1  2   42   43   199 0.979   8.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_1|57_aa
MTFQSEKENPDDLNKPQAPSSSSRKYSCDKPVATHHRVNKPVATHHRVNKHNATHGL

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_1|174_bp
atgacgttccaatcagagaaggagaatccagacgacctcaacaagccccaagctccctca
tcttcctctcggaaatactcctgtgacaagccagtggccacccatcatcgggtgaacaag
ccagtggccacccatcatcgggtgaacaaacacaatgccactcatggtctgtga

>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_2|482_aa
MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVSSFMGSSFMMPISQFRQVALLRA
HAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQID
DNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLP
TLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNV
IVANTMPTHLSNGQMSTPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQE
VI

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_2|1449_bp
atgcgactctccaaaaccctcgtcgacatggacatggccgactacagtgctgcactggac
ccagcctacaccaccctggaatttgagaatgtgcaggtgttgacgatgggcaatgacacg
tccccatcagaaggcaccaacctcaacgcgcccaacagcctgggtgtcagcgccctgtgt
gccatctgcggggaccgggccacgggcaaacactacggtgcctcgagctgtgacggctgc
aagggcttcttccggaggagcgtgcggaagaaccacatgtactcctgcagatttagccgg
cagtgcgtggtggacaaagacaagaggaaccagtgccgctactgcaggctcaagaaatgc
ttccgggctggcatgaagaaggaagccgtccagaatgagcgggaccggatcagcactcga
aggtcaagctatgaggacagcagcctgccctccatcaatgcgctcctgcaggcggaggtc
ctgtcccgacagatcacctcccccgtctccgggatcaacggcgacattcgggcgaagaag
attgccagcatcgcagatgtgtgtgagtccatgaaggagcagctgctggttctcgttgag
tgggccaagtacatcccagctttctgcgagctccccctggacgaccaggtttctagtttt
atgggtagtagttttatgatgcccatttcacagttcaggcaggtggccctgctcagagcc
catgctggcgagcacctgctgctcggagccaccaagagatccatggtgttcaaggacgtg
ctgctcctaggcaatgactacattgtccctcggcactgcccggagctggcggagatgagc
cgggtgtccatacgcatccttgacgagctggtgctgcccttccaggagctgcagatcgat
gacaatgagtatgcctacctcaaagccatcatcttctttgacccagatgccaaggggctg
agcgatccagggaagatcaagcggctgcgttcccaggtgcaggtgagcttggaggactac
atcaacgaccgccagtatgactcgcgtggccgctttggagagctgctgctgctgctgccc
accttgcagagcatcacctggcagatgatcgagcagatccagttcatcaagctcttcggc
atggccaagattgacaacctgttgcaggagatgctgctgggagggtcccccagcgatgca
ccccatgcccaccaccccctgcaccctcacctgatgcaggaacatatgggaaccaacgtc
atcgttgccaacacaatgcccactcacctcagcaacggacagatgtccacccctgagacc
ccacagccctcaccgccaggtggctcagggtctgagccctataagctcctgccgggagcc
gtcgccacaatcgtcaagcccctctctgccatcccccagccgaccatcaccaagcaggaa
gttatctag

>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_3|83_aa
MTCKMFLESSAVTTSNCFLKAQSNSLGSDLVRGDMAKPTKKVGIVGKYGTRYGASLWKMV
KKVEISQQAKYTCSFCGKTKMKR

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_3|252_bp
atgacttgtaagatgtttctagaaagctctgctgtgacaaccagtaactgttttttaaaa
gcccagtccaactctctgggctcggacctagttcgcggtgacatggccaaacctaccaag
aaagtcgggatcgtcggtaaatacgggacccgctatggggcctccctctggaaaatggtg
aagaaagttgaaatcagccagcaggccaagtacacttgctctttctgtggcaaaaccaag
atgaagagatga

>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_4|342_aa
MSEESDSLRTSPSVASLSENELPPPPEPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQA
LRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKPSA
LKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQV
NGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIK
PFLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGGTAGELDTATWNAVLLASEDDFVKE
FCQPVPACDSILGQTLLPEGLTSDAQCDDSLRAVKSQLYSCY

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_4|1029_bp
atgtccgaagaaagtgactctctgagaaccagcccttctgtggcctcactctctgaaaat
gagctgccaccaccacctgagcctccgggctatgtgtgctcactgacagaagacctggtc
accaaagcccgggaagagctgcaggaaaagccggaatggagacttcgagatgtgcaggcc
cttcgtgacatggtgcggaaggagtaccccaacctgagcacatccctcgacgatgccttc
ctgctgcgcttcctccgagcccgcaagtttgattacgaccgggccctgcagctcctcgtc
aactaccacagctgtagaagaagctggcccgaagtcttcaataacttgaagccatcagcc
ttaaaagatgtccttgcttccgggttcctcaccgtgctgccccacactgaccccaggggc
tgccatgtcgtctgcatccgcccagacagatggataccaagcaactatccaattactgaa
aacatccgagccatatacttgaccttagaaaaactcattcagtctgaagaaacccaggtg
aatggaattgtaattcttgcagactacaaaggagtgagtttatcaaaagcatctcacttt
ggcccttttatagccaaaaaggtgattggcatcctccaggatggtttccccattcggata
aaagcagtccatgtggtgaatgaacctcgaatatttaaaggcatttttgccatcataaaa
ccatttctaaaggagaaaatagcaaacagattcttcctccatgggtctgacttgaactct
ctccacacaaaccttccaagaagcatcctccccaaggagtatgggggcacggctggggag
ctggacactgccacctggaacgcggtactgctggcttcagaagacgattttgtgaaagag
ttctgccaacctgttcctgcctgtgacagcatcctgggccagacgctgctgcccgagggc
ctgacctcagatgcacagtgtgacgactccttgcgagctgtgaagtcacagctgtactcc
tgctactag

>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_5|626_aa
MATNIINSRKRTLPERGAGSKGVGGAVPGAAEGQRSGRSLPPRDPRRLSPSPPATCRRQA
RSVGAATGRPAPAHLRSRRLSVPGPPVRSASPGQPSARSPQPAAEPVALATWAAELPRHS
RYGGSDGTRTVRVPFRSRGGGRGGTKWESRAELRRRDPGWNLARGRYGKGDIFIPTSSQN
DPFESKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADK
DCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVG
SFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALL
SFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRS
GLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPS
KSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEED
GQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSKWPAVWVKI
SSSWVCLLLYVWTLVAPLVLTSRDFS

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_5|1881_bp
atggctacaaatataataaacagccgaaaacggactctccctgaacgcggggcggggtca
aagggcgtcgggggcgccgtccccggcgcggctgagggacaaagatcgggccgcagcctc
cctccccgggatccccggcggctcagcccctcgccccctgcgacgtgtcgacgccaggcc
cggagcgttggggccgcaaccggccgcccggctcctgctcacctgcggtctcgccgcctc
tccgtgcctgggccgccggtccgcagcgcctccccggggcagcctagcgcccgcagcccg
caacccgcagcggagcccgttgccttggcgacctgggctgccgaactcccgcggcactcg
cgctacggcggctcggatgggaccaggacggttcgcgtccccttccgcagccgcggaggg
ggcagaggagggacgaagtgggagtcgagggctgagctgcgaaggagggatccgggttgg
aacttggcccggggaagatacggaaagggggacatctttattccaaccagcagccagaat
gatccttttgaaagtaagaattccacggtgactcgcctcatttatgctttcattctcctc
ctgagcactgtcgtatcctatatcatgcagagaaaagagatggaaacttacttgaagaag
attcctggattttgtgaagggggatttaaaatccatgaggctgatataaatgcagataaa
gattgtgatgtgctggttggttataaagctgtgtatcggatcagctttgccatggccatc
tttttctttgtcttttctctgctcatgttcaaagtaaaaacaagtaaagatctccgagcg
gcagtacacaatgggttttggttcttcaaaattgctgcccttattggaatcatggttggc
tctttctacatccctgggggctatttcagctcagtctggtttgttgttggcatgataggg
gccgccctcttcatcctcattcagctggtgctgctggtagattttgctcattcttggaat
gaatcatgggtaaatcgaatggaagaaggaaacccaaggttgtggtatgctgctttactg
tctttcacaagcgccttttatatcctgtcaatcatctgtgtcgggctgctctatacatat
tacaccaaaccagatggctgcacagaaaacaagttcttcatcagtattaacctgatcctt
tgcgttgtggcttctattatatcgatccacccaaaaattcaggaacaccagcctcgctcc
ggcctcttgcagtcctccctcatcaccctctacactatgtacctcacctggtcagccatg
tccaatgaacctgatcgttcctgcaatcccaacctgatgagctttattacacgcataact
gcaccaaccctggctcctggaaattcaactgctgtggtccctacccctactccaccatca
aagagtgggtctttactggattcagataattttattggactgtttgtctttgttctctgc
ctcttgtattctagcatccgcacttccactaatagccaagtagacaagctgaccctgtca
gggagtgacagcgtcatccttggtgatacaactaccagtggtgccagtgatgaagaagat
ggacagcctcggcgggctgtggacaacgagaaagagggagtgcagtatagctactcctta
ttccacctcatgctctgcttggcttccttgtacatcatgatgaccctgaccagctggtac
agccctgatgcaaagtttcagagcatgaccagcaagtggccagctgtgtgggtcaagatc
agctccagctgggtctgcctcctgctttacgtctggacccttgtggctccacttgtcctc
accagtcgggacttcagctga

>gi568815578f:44380000_44589538|GENSCAN_predicted_peptide_6|25_aa
MDCEPDTPNQQSKGDHKVDPQDIEP

>gi568815578f:44380000_44589538|GENSCAN_predicted_CDS_6|78_bp
atggactgtgagccagacacaccaaatcagcagtccaaaggggaccacaaagtggatcct
caggacatcgaaccctga