Result of FASTA (omim) for
pF1KB3632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3632, 367 aa
1>>>pF1KB3632 367 - 367 aa - 367 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2405+/-0.000343; mu= 16.9717+/- 0.021
mean_var=69.7720+/-13.844, 0's: 0 Z-trim(114.6): 13 B-trim: 58 in 1/56
Lambda= 0.153544
statistics sampled from 24536 (24548) to 24536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.288), width: 16
Scan time: 8.480
The best scores are: opt bits E(85289)
NP_000365 (OMIM: 176100,613521) uroporphyrinogen d ( 367) 2495 561.7 9.1e-160
XP_005271227 (OMIM: 176100,613521) PREDICTED: urop ( 295) 1850 418.8 7.8e-117
XP_005271226 (OMIM: 176100,613521) PREDICTED: urop ( 295) 1850 418.8 7.8e-117
>>NP_000365 (OMIM: 176100,613521) uroporphyrinogen decar (367 aa)
initn: 2495 init1: 2495 opt: 2495 Z-score: 2989.3 bits: 561.7 E(85289): 9.1e-160
Smith-Waterman score: 2495; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KB3 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH
310 320 330 340 350 360
pF1KB3 SRLLRQN
:::::::
NP_000 SRLLRQN
>>XP_005271227 (OMIM: 176100,613521) PREDICTED: uroporph (295 aa)
initn: 1850 init1: 1850 opt: 1850 Z-score: 2218.5 bits: 418.8 E(85289): 7.8e-117
Smith-Waterman score: 1850; 100.0% identity (100.0% similar) in 276 aa overlap (92-367:20-295)
70 80 90 100 110 120
pF1KB3 PEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERL
::::::::::::::::::::::::::::::
XP_005 MLPSFSPTSLLYPRCFLPLQALGMEVTMVPGKGPSFPEPLREEQDLERL
10 20 30 40
130 140 150 160 170 180
pF1KB3 RDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWL
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB3 YQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVA
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB3 KQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTL
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB3 QGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS
230 240 250 260 270 280
pF1KB3 RLLRQN
::::::
XP_005 RLLRQN
290
>>XP_005271226 (OMIM: 176100,613521) PREDICTED: uroporph (295 aa)
initn: 1850 init1: 1850 opt: 1850 Z-score: 2218.5 bits: 418.8 E(85289): 7.8e-117
Smith-Waterman score: 1850; 100.0% identity (100.0% similar) in 276 aa overlap (92-367:20-295)
70 80 90 100 110 120
pF1KB3 PEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERL
::::::::::::::::::::::::::::::
XP_005 MLPSFSPTSLLYPRCFLPLQALGMEVTMVPGKGPSFPEPLREEQDLERL
10 20 30 40
130 140 150 160 170 180
pF1KB3 RDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWL
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB3 YQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVA
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB3 KQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTL
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB3 QGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS
230 240 250 260 270 280
pF1KB3 RLLRQN
::::::
XP_005 RLLRQN
290
367 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:16:04 2016 done: Sat Nov 5 05:16:05 2016
Total Scan time: 8.480 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]