Result of FASTA (ccds) for pF1KB3604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3604, 500 aa
  1>>>pF1KB3604 500 - 500 aa - 500 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2725+/-0.000872; mu= 18.3798+/- 0.052
 mean_var=66.3555+/-13.210, 0's: 0 Z-trim(106.2): 17  B-trim: 14 in 1/48
 Lambda= 0.157448
 statistics sampled from 8841 (8851) to 8841 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.272), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS10534.1 ABAT gene_id:18|Hs108|chr16            ( 500) 3406 782.7       0
CCDS54792.1 ETNPPL gene_id:64850|Hs108|chr4        ( 441)  303 77.8 2.7e-14
CCDS82944.1 ETNPPL gene_id:64850|Hs108|chr4        ( 459)  303 77.8 2.8e-14
CCDS54793.1 ETNPPL gene_id:64850|Hs108|chr4        ( 493)  303 77.8   3e-14
CCDS3682.1 ETNPPL gene_id:64850|Hs108|chr4         ( 499)  303 77.9   3e-14
CCDS4434.1 PHYKPL gene_id:85007|Hs108|chr5         ( 450)  267 69.6 7.9e-12


>>CCDS10534.1 ABAT gene_id:18|Hs108|chr16                 (500 aa)
 initn: 3406 init1: 3406 opt: 3406  Z-score: 4178.6  bits: 782.7 E(32554):    0
Smith-Waterman score: 3406; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)

               10        20        30        40        50        60
pF1KB3 MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF
              430       440       450       460       470       480

              490       500
pF1KB3 RDHHAHLFLNIFSDILADFK
       ::::::::::::::::::::
CCDS10 RDHHAHLFLNIFSDILADFK
              490       500

>>CCDS54792.1 ETNPPL gene_id:64850|Hs108|chr4             (441 aa)
 initn: 234 init1: 126 opt: 303  Z-score: 370.1  bits: 77.8 E(32554): 2.7e-14
Smith-Waterman score: 326; 26.6% identity (55.9% similar) in 331 aa overlap (188-496:54-375)

       160       170       180       190       200       210       
pF1KB3 LITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAF
                                     :   ..:   .  :  :  :  ....  :.
CCDS54 RFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQD--VITLDHAY
            30        40        50        60        70          80 

       220       230       240          250       260       270    
pF1KB3 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFP---RLKYPLEEFVKENQQEEARCL-EEV
       ::.  . .  .  :  .  :. .    .:: :   : ::      .:.. . :    .::
CCDS54 HGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKY------REDHADSASAYADEV
              90       100       110       120             130     

           280       290       300       310       320       330   
pF1KB3 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGG
       . .:   ... . .:..:.: .:: ::.      .:.:. . ..  : .:..::::.: :
CCDS54 KKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFG
         140       150       160       170       180       190     

            340       350       360              370       380     
pF1KB3 CTGK-FWAHEHWGLDDPADVMTFSKKMMTGG-----FFHKE--EFRPNAPYRIFNTWLGD
        .:: ::. . .: :   :..:..: : .:         ::  :   .. .. :::. :.
CCDS54 RVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGN
         200       210       220       230       240       250     

         390       400       410       420       430       440     
pF1KB3 PSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTP
       : .  .   :..::. ::: .:: ..:.  :: ::  :     .:. .:: : : ..:  
CCDS54 PVSCAVGLAVLDIIENEDLQGNAKRVGN-YLTELLKKQKAKHTLIGDIRGIGLFIGIDLV
         260       270       280        290       300       310    

         450               460       470         480       490     
pF1KB3 DDSIR--------NKLILIARNKGVVLGGCGDKS--IRFRPTLVFRDHHAHLFLNIFSDI
        : ..        ...:   ..: :.:.. : .   ....: . : .. :..... .. :
CCDS54 KDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRI
          320       330       340       350       360       370    

         500                                                       
pF1KB3 LADFK                                                       
       :                                                           
CCDS54 LTVLEEAMGTKTESVTSENTPCKTKMLKEAHIELLRDSTTDSKENPSRKRNGMCTDTHSL
          380       390       400       410       420       430    

>>CCDS82944.1 ETNPPL gene_id:64850|Hs108|chr4             (459 aa)
 initn: 234 init1: 126 opt: 303  Z-score: 369.9  bits: 77.8 E(32554): 2.8e-14
Smith-Waterman score: 339; 25.1% identity (53.2% similar) in 434 aa overlap (85-496:1-393)

           60        70        80        90       100       110    
pF1KB3 SQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLK
                                     . : .:...::  .... :  :. ::...:
CCDS82                               MFDENGEQYLDCINNVAHV--GHCHPGVVK
                                             10          20        

          120       130       140       150       160       170    
pF1KB3 LIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKT
          . :   . .:   :     .:.::  .. : .. :. .:       :: .:. ::. 
CCDS82 AALK-QMELLNTNSRFL----HDNIVEYAKR-LSATLPEKLSVCYFTNSGSEANDLALR-
       30         40            50         60        70        80  

          180       190       200       210       220       230    
pF1KB3 IFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIH
                              .  :  :  :  ....  :.::.  . .  .  :  .
CCDS82 -----------------------LARQFRGHQD--VITLDHAYHGHLSSLIEISPYKFQK
                                     90         100       110      

          240          250       260       270        280       290
pF1KB3 KIDIPSFDWPIAPFP---RLKYPLEEFVKENQQEEARCL-EEVEDLIVKYRKKKKTVAGI
         :. .    .:: :   : ::      .:.. . :    .::. .:   ... . .:..
CCDS82 GKDVKKEFVHVAPTPDTYRGKY------REDHADSASAYADEVKKIIEDAHNSGRKIAAF
        120       130             140       150       160       170

              300       310       320       330        340         
pF1KB3 IVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGK-FWAHEHWGLDDP
       :.: .:: ::.      .:.:. . ..  : .:..::::.: : .:: ::. . .: :  
CCDS82 IAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFV
              180       190       200       210       220       230

     350       360              370       380       390       400  
pF1KB3 ADVMTFSKKMMTGG-----FFHKE--EFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE
        :..:..: : .:         ::  :   .. .. :::. :.: .  .   :..::. :
CCDS82 PDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENE
              240       250       260       270       280       290

            410       420       430       440       450            
pF1KB3 DLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIR--------NKLI
       :: .:: ..:.  :: ::  :     .:. .:: : : ..:   : ..        ...:
CCDS82 DLQGNAKRVGN-YLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHII
              300        310       320       330       340         

          460       470         480       490       500            
pF1KB3 LIARNKGVVLGGCGDKS--IRFRPTLVFRDHHAHLFLNIFSDILADFK            
          ..: :.:.. : .   ....: . : .. :..... .. ::                
CCDS82 YKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLEEAMGTKTESVTS
     350       360       370       380       390       400         

CCDS82 ENTPCKTKMLKEAHIELLRDSTTDSKENPSRKRNGMCTDTHSLLSKRLKT
     410       420       430       440       450         

>>CCDS54793.1 ETNPPL gene_id:64850|Hs108|chr4             (493 aa)
 initn: 234 init1: 126 opt: 303  Z-score: 369.4  bits: 77.8 E(32554): 3e-14
Smith-Waterman score: 326; 26.6% identity (55.9% similar) in 331 aa overlap (188-496:106-427)

       160       170       180       190       200       210       
pF1KB3 LITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAF
                                     :   ..:   .  :  :  :  ....  :.
CCDS54 RFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQD--VITLDHAY
          80        90       100       110       120         130   

       220       230       240          250       260       270    
pF1KB3 HGRTMGCLATTHSKAIHKIDIPSFDWPIAPFP---RLKYPLEEFVKENQQEEARCL-EEV
       ::.  . .  .  :  .  :. .    .:: :   : ::      .:.. . :    .::
CCDS54 HGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKY------REDHADSASAYADEV
           140       150       160       170             180       

           280       290       300       310       320       330   
pF1KB3 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGG
       . .:   ... . .:..:.: .:: ::.      .:.:. . ..  : .:..::::.: :
CCDS54 KKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFG
       190       200       210       220       230       240       

            340       350       360              370       380     
pF1KB3 CTGK-FWAHEHWGLDDPADVMTFSKKMMTGG-----FFHKE--EFRPNAPYRIFNTWLGD
        .:: ::. . .: :   :..:..: : .:         ::  :   .. .. :::. :.
CCDS54 RVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGN
       250       260       270       280       290       300       

         390       400       410       420       430       440     
pF1KB3 PSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTP
       : .  .   :..::. ::: .:: ..:.  :: ::  :     .:. .:: : : ..:  
CCDS54 PVSCAVGLAVLDIIENEDLQGNAKRVGN-YLTELLKKQKAKHTLIGDIRGIGLFIGIDLV
       310       320       330        340       350       360      

         450               460       470         480       490     
pF1KB3 DDSIR--------NKLILIARNKGVVLGGCGDKS--IRFRPTLVFRDHHAHLFLNIFSDI
        : ..        ...:   ..: :.:.. : .   ....: . : .. :..... .. :
CCDS54 KDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRI
        370       380       390       400       410       420      

         500                                                       
pF1KB3 LADFK                                                       
       :                                                           
CCDS54 LTVLEEAMGTKTESVTSENTPCKTKMLKEAHIELLRDSTTDSKENPSRKRNGMCTDTHSL
        430       440       450       460       470       480      

>>CCDS3682.1 ETNPPL gene_id:64850|Hs108|chr4              (499 aa)
 initn: 234 init1: 126 opt: 303  Z-score: 369.3  bits: 77.9 E(32554): 3e-14
Smith-Waterman score: 347; 25.3% identity (53.3% similar) in 435 aa overlap (84-496:40-433)

            60        70        80        90       100       110   
pF1KB3 RSQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALL
                                     :. : .:...::  .... :  :. ::...
CCDS36 TLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHV--GHCHPGVV
      10        20        30        40        50          60       

           120       130       140       150       160       170   
pF1KB3 KLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALK
       :   . :   . .:   :     .:.::  .. : .. :. .:       :: .:. ::.
CCDS36 KAALK-QMELLNTNSRFLH----DNIVEYAKR-LSATLPEKLSVCYFTNSGSEANDLALR
        70         80            90        100       110       120 

           180       190       200       210       220       230   
pF1KB3 TIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI
                               .  :  :  :  ....  :.::.  . .  .  :  
CCDS36 ------------------------LARQFRGHQD--VITLDHAYHGHLSSLIEISPYKFQ
                                     130         140       150     

           240          250       260       270        280         
pF1KB3 HKIDIPSFDWPIAPFP---RLKYPLEEFVKENQQEEARCL-EEVEDLIVKYRKKKKTVAG
       .  :. .    .:: :   : ::      .:.. . :    .::. .:   ... . .:.
CCDS36 KGKDVKKEFVHVAPTPDTYRGKY------REDHADSASAYADEVKKIIEDAHNSGRKIAA
         160       170             180       190       200         

     290       300       310       320       330        340        
pF1KB3 IIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGK-FWAHEHWGLDD
       .:.: .:: ::.      .:.:. . ..  : .:..::::.: : .:: ::. . .: : 
CCDS36 FIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDF
     210       220       230       240       250       260         

      350       360              370       380       390       400 
pF1KB3 PADVMTFSKKMMTGG-----FFHKE--EFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKR
         :..:..: : .:         ::  :   .. .. :::. :.: .  .   :..::. 
CCDS36 VPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIEN
     270       280       290       300       310       320         

             410       420       430       440       450           
pF1KB3 EDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIR--------NKL
       ::: .:: ..:.  :: ::  :     .:. .:: : : ..:   : ..        ...
CCDS36 EDLQGNAKRVGN-YLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHI
     330       340        350       360       370       380        

           460       470         480       490       500           
pF1KB3 ILIARNKGVVLGGCGDKS--IRFRPTLVFRDHHAHLFLNIFSDILADFK           
       :   ..: :.:.. : .   ....: . : .. :..... .. ::               
CCDS36 IYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLEEAMGTKTESVT
      390       400       410       420       430       440        

CCDS36 SENTPCKTKMLKEAHIELLRDSTTDSKENPSRKRNGMCTDTHSLLSKRLKT
      450       460       470       480       490         

>>CCDS4434.1 PHYKPL gene_id:85007|Hs108|chr5              (450 aa)
 initn: 145 init1: 121 opt: 267  Z-score: 325.8  bits: 69.6 E(32554): 7.9e-12
Smith-Waterman score: 331; 24.3% identity (53.3% similar) in 441 aa overlap (80-500:37-437)

      50        60        70        80        90       100         
pF1KB3 VPGPRSQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSH
                                     ..:.:. : .: ...:  :... :  :. :
CCDS44 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVAHV--GHCH
         10        20        30        40        50        60      

     110       120       130       140       150       160         
pF1KB3 PALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNE
       : ...  .. ::  . .:   :     .:.:.   : :  . :. .  .  .  :: .:.
CCDS44 PLVVQAAHE-QNQVLNTNSRYLH----DNIVD-YAQRLSETLPEQLCVFYFLNSGSEAND
           70         80            90        100       110        

     170       180       190       200       210       220         
pF1KB3 NALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTH
        ::           :  : ..             :  :  .:.   :.::. .. :    
CCDS44 LAL-----------RLARHYT-------------GHQDVVVLDH--AYHGH-LSSLIDIS
      120                               130         140        150 

     230       240         250       260       270       280       
pF1KB3 SKAIHKIDIPSFDW-PIAPFP-RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV
          ....:  . .:  .::.:   . : .:   .. .      .::. .. . ..: . .
CCDS44 PYKFRNLDGQK-EWVHVAPLPDTYRGPYRE---DHPNPAMAYANEVKRVVSSAQEKGRKI
             160        170       180          190       200       

       290       300       310       320       330        340      
pF1KB3 AGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGK-FWAHEHWGL
       :....: . : ::.      .: .. .  :: : .:..::.:.: : .:: ::: .  : 
CCDS44 AAFFAESLPSVGGQIIPPAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGK
       210       220       230       240       250       260       

        350       360        370             380       390         
pF1KB3 DDPADVMTFSKKMMTGGFFHK-EEFRPNA------PYRIFNTWLGDPSKNLLLAEVINII
       :   :..:..:.. .:         .: :        . :::. :.: .  .   :.:..
CCDS44 DFVPDIVTMGKSIGNGHPVACVAATQPVARAFEATGVEYFNTFGGSPVSCAVGLAVLNVL
       270       280       290       300       310       320       

     400       410       420       430       440        450        
pF1KB3 KREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDT-PDDSIRNKLI----
       ..:.: ..:. .:. :.  : . . ..: ... ::: : : . :   :.. :.       
CCDS44 EKEQLQDHATSVGSFLMQLLGQQKIKHP-IVGDVRGVGLFIGVDLIKDEATRTPATEEAA
       330       340       350        360       370       380      

           460           470       480       490       500         
pF1KB3 -LIARNK-GVVL---GGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK         
        :..: : . ::    : : . ..:.: . :   .:.  .  .. ::.:..         
CCDS44 YLVSRLKENYVLLSTDGPGRNILKFKPPMCFSLDNARQVVAKLDAILTDMEEKVRSCETL
        390       400       410       420       430       440      

CCDS44 RLQP
        450




500 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:13:34 2016 done: Sat Nov  5 05:13:34 2016
 Total Scan time:  3.010 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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