GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:14:00

Sequence gi568815582f:8635740_8881427 : 245688 bp : 48.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3352   3423   72  2  0   94   78    65 0.781   5.48
 1.02 Intr +   5392   5445   54  2  0   98   89    66 0.988   6.65
 1.03 Intr +   6388   6468   81  2  0   80  116    72 0.997   8.81
 1.04 Intr +   6724   6826  103  2  1  110   83   143 0.999  15.23
 1.05 Intr +   8818   8986  169  1  1   59   82   306 0.933  27.05
 1.06 Intr +  17269  17416  148  0  1   42   37    67 0.007  -3.19
 1.07 Term +  25008  25177  170  1  2   41   48   404 0.916  29.74
 1.08 PlyA +  25906  25911    6                              -0.45

 2.05 PlyA -  25979  25974    6                               1.05
 2.04 Term -  26915  26873   43  1  1  105   48    30 0.045  -2.67
 2.03 Intr -  27138  27103   36  2  0   62  100    45 0.029   0.48
 2.02 Intr -  30401  30363   39  1  0  114   96     0 0.085   0.74
 2.01 Init -  38916  38780  137  0  2   58   53   154 0.492   6.53
 2.00 Prom -  45572  45533   40                              -2.96

 3.00 Prom +  49627  49666   40                              -5.26
 3.01 Init +  56705  56731   27  1  0  112   94    18 0.251   4.58
 3.02 Intr +  59770  59893  124  0  1   18  100    62 0.108   0.56
 3.03 Intr +  83265  83441  177  1  0   55   69    63 0.013   0.99
 3.04 Intr +  99960 100070  111  1  0  104  107   115 0.169  15.35
 3.05 Intr + 110262 110359   98  1  2   87  109    87 0.732  10.43
 3.06 Intr + 112369 112398   30  0  0  105  111     7 0.784   3.03
 3.07 Intr + 114683 114800  118  1  1   71   82   121 0.995   9.84
 3.08 Intr + 122018 122067   50  0  2  100   78    22 0.656   0.80
 3.09 Intr + 128330 128410   81  1  0  106  109    78 0.913  11.53
 3.10 Intr + 128999 129091   93  1  0  136   76   115 0.999  15.26
 3.11 Intr + 130469 130531   63  1  0   88  109    27 0.929   3.71
 3.12 Intr + 132454 132517   64  0  1  117   82    69 0.876   7.49
 3.13 Intr + 133086 133234  149  1  2   52   80   174 0.943  12.95
 3.14 Intr + 137041 137178  138  0  0   54   86   325 0.972  29.56
 3.15 Intr + 139151 139318  168  1  0   86   68   276 0.999  25.54
 3.16 Intr + 140605 140751  147  0  0   80   92   258 0.991  25.83
 3.17 Intr + 143740 143851  112  0  1  106  116    79 0.999  12.45
 3.18 Term + 145570 145691  122  2  2  124   43    41 0.660   1.84
 3.19 PlyA + 147637 147642    6                               1.05

 4.02 PlyA - 147928 147923    6                               1.05
 4.01 Sngl - 160683 160213  471  0  0    1   47   546 0.639  37.92
 4.00 Prom - 161330 161291   40                              -9.75

 5.00 Prom + 161473 161512   40                             -14.13
 5.01 Init + 161874 162209  336  2  0   84  111   150 0.117  14.36
 5.02 Intr + 166060 166171  112  0  1   60   54    74 0.207   1.15
 5.03 Intr + 166551 166622   72  1  0   74   48    92 0.680   3.18
 5.04 Intr + 169028 169104   77  0  2   46   96    56 0.778   1.43
 5.05 Intr + 170577 170668   92  2  2   67   90    30 0.810  -0.11
 5.06 Intr + 175340 175500  161  2  2   59   46   156 0.840   8.13
 5.07 Intr + 177252 177367  116  1  2   65  100    97 0.996   8.77
 5.08 Intr + 178601 178670   70  1  1   95   57    64 0.269   2.75
 5.09 Intr + 196064 196139   76  0  1  100   86   -35 0.022  -3.93
 5.10 Intr + 196382 196561  180  2  0   86   16    96 0.247   1.18
 5.11 Term + 197090 197297  208  2  1  120   44   119 0.393   7.51
 5.12 PlyA + 197757 197762    6                               1.05

 6.11 PlyA - 198127 198122    6                               1.05
 6.10 Term - 199713 199537  177  0  0   75   33   124 0.156   3.29
 6.09 Intr - 205524 205390  135  0  0   60   81    52 0.155   2.46
 6.08 Intr - 208758 208615  144  0  0   74   90    11 0.113   0.38
 6.07 Intr - 213206 212897  310  1  1   44   86   144 0.176   6.12
 6.06 Intr - 219587 219450  138  1  0  106    6   186 0.025  11.78
 6.05 Intr - 222733 222611  123  0  0  101   61   145 0.992  12.80
 6.04 Intr - 223596 223432  165  2  0  115   69    64 0.264   6.28
 6.03 Intr - 233115 233028   88  1  1  114   47   -11 0.000  -3.57
 6.02 Intr - 233351 233227  125  1  2   87   49    74 0.001   3.63
 6.01 Init - 244048 243984   65  1  2   65   97    56 0.575   4.84

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 219587 219425  163  1  1  106   49   198 0.974  15.11
S.002 Intr + 233874 234047  174  1  0   85   77   107 0.942   9.21
S.003 Term + 234077 234279  203  0  2   70   42    95 0.976   0.65


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_1|265_aa
XVGADLLSMCQRNIALNSHLAATGGGIVRVKELDWLKDDLCTDPKVPFSWSQEEISDLYD
HTTILFAAEVFYDDDLTDAVFKTLSRLAHRLKNACTAILSVEKRLNFTLRHLDVTCEAYD
HFRSCLHALEQLADGKLRFVVEPVEASFPQLLVYERLQQLVTASSNPLLLLNQCMRRANG
GAADIGSRQWIPASTREAFQTVLFLTWQCGGEIGPASGQVLEEEEEEEEEEEEEEEEGEE
GEEGEEEEEEEEEEEEEEEEEEELC

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_1|798_bp
natgtcggtgcagatctcttgtccatgtgccagcgaaacattgccctcaacagccacctg
gctgccactggaggtggtatagttagggtcaaagaactggactggctgaaggacgacctc
tgcacagatcccaaggtccccttcagttggtcacaagaggaaatttctgacttgtacgat
cacaccaccatcctgtttgcagccgaagtgttttacgacgacgacttgactgatgctgtg
tttaaaacgctctcccgactcgcccacagattgaaaaatgcctgcacagccatactgtcg
gtggagaagaggctcaacttcacattgagacacttggacgtcacatgtgaagcctacgat
cacttccgctcctgcctgcacgcgctggagcagctcgcagatggcaagctgcgcttcgtg
gtggagcccgtggaggcctccttcccacagctcctggtttacgagcgcctccagcaactg
gtgactgccagttcaaacccacttctgctgctcaaccaatgcatgcgccgggcaaacggt
ggtgctgctgatattggaagcaggcagtggatcccagcttcaaccagggaggccttccag
actgtgctgtttcttacatggcagtgtggtggggagattgggccggcaagtgggcaagtc
ttggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagggggaggag
ggggaggagggggaggaggaagaggaggaggaggaggaagaggaggaggaggaggaggag
gaggaggagctgtgctga

>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_2|84_aa
MRAPSSGSAGCLLDFPQRLAGLPGSAERPGQSAPPAPALAFATANGLSRLSGNQRTPSGC
LTDITKSNFEKTQTISFMLFLGEL

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_2|255_bp
atgcgcgccccgagttccggcagcgctgggtgtctgctcgacttcccccagcgactcgcc
ggactccctggctccgccgagcgtcccggccaatcagcgccgccagccccggccctcgct
ttcgccacagccaatgggttgagcagactctcaggcaaccaaagaacaccctcagggtgc
ttgacagacattaccaagtccaactttgagaagacccaaaccatcagcttcatgctcttt
cttggtgagctctga

>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_3|623_aa
MAKKEAVEQNRMSFAQPYVSLSFSVCKLALLHYIRRRLKASVMSGNQLASAVSGVRESGL
FSLNGKCVSSNHTDLICLLLVGPPHGNTRSHRTQQDVSLFTEESLGLGTGWQHAKGVPVP
QGVMASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQE
LMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQ
QPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFM
WYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKID
IPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQS
EGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSK
KMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLT
GLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPT
LVFRDHHAHLFLNIFSDILADFK

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_3|1872_bp
atggctaagaaggaggcagttgagcagaataggatgagttttgctcaaccttatgtcagc
ctcagcttctcagtctgcaaactggcactactccactacatcagaagacgtttaaaagca
tcagtgatgtctggaaatcagttagcatcggcggtttctggagtccgtgaaagtggtttg
ttttctctgaacgggaagtgcgtttcctccaatcacaccgacctgatttgtttgttgctt
gttgggcctccccacgggaacacgagatcccacagaacacagcaggacgtgtccttgttt
actgaggaatctctggggctcggcacagggtggcagcacgcaaagggtgtccctgtccct
caaggggtcatggcctccatgttgctcgcccagcgcctggcctgcagcttccagcacagc
taccgcctgctggtgcctggatccagacacattagtcaagctgcagccaaagtcgacgtt
gaatttgattatgatgggcctctgatgaagacggaagtcccagggcctagatctcaggag
ttaatgaaacagctgaatataattcagaatgcagaggctgtgcattttttctgcaattac
gaagagagccgaggcaattacctggttgatgtggacggcaaccgaatgctggatctttat
tcccagatctcctctgtccccataggttacagccaccccgccctgctgaaactcatccaa
cagcctcaaaatgcgagcatgtttgtcaacagacccgccctcggaatcctgcctccggag
aactttgtggagaagctccggcagtccttgctctcggtggctcccaaagggatgtcccag
ctcatcaccatggcctgcggctcctgctccaatgaaaacgccttaaagaccatcttcatg
tggtaccggagcaaggaaagagggcagaggggcttctcccaggaggagctggagacgtgc
atgattaaccaggcccctggctgccccgactacagcatcctctccttcatgggcgcgttc
catgggaggaccatgggttgcttagcgaccacgcactctaaagccattcacaagatcgac
atcccttcctttgactggcccatcgcaccgttcccacggctgaaataccctctggaagag
tttgtgaaagagaaccaacaggaggaggcccgctgtctggaagaggtggaggatctgatt
gtgaaatatcggaaaaagaagaagacggtggccgggatcatcgtggagcccatccagtcc
gagggtggagacaaccacgcatccgatgacttctttcggaagctgagagacatcgccagg
aagcatggctgcgccttcttggtggacgaggtccagaccggaggaggctgcacgggcaag
ttctgggcccatgagcactggggcctggatgacccagcagacgtgatgaccttcagcaag
aagatgatgactgggggcttcttccacaaggaggagttcaggcctaatgctccctaccgg
atcttcaacacctggctgggggacccgtccaagaacctgttgctggctgaggtcatcaac
atcatcaagcgggaggacctgctaaataatgcagcccatgccgggaaggccctgctcaca
ggactgctggacctccaggcccggtacccccagttcatcagcagggtgagaggacgaggc
accttttgctccttcgatactcccgatgattccatacggaataagctcattttaattgcc
agaaacaaaggtgtggtgttgggtggctgtggtgacaaatccattcgtttccgtcccacg
ctggtcttcagggatcaccacgctcacctgttcctcaatattttcagtgacatcttagca
gacttcaagtaa

>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_4|156_aa
MFYRFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTML
CWMSYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVR
IQRYSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_4|471_bp
atgttttaccgttttgatgccatcagaaccttcgggttcctgtcacgactgaagttggca
cagactgccctgacagtggtagctttgccaccaggctattacttgtactcccagggcctc
ctcactctcaacaccgtgtgcctcatgagtgggatatcgggctttgccctgaccatgctg
tgctggatgagctatttcttacggagactggttggtatcctgtatctgaatgagtctggc
accatgctgcgggtggcccatctgaacttctggggctggcggcaggacacatactgtccc
atggcagatgtgattcccctgacagaaaccaaggaccggcctcaggagatgtttgtgcgt
atccagcggtacagtgggaaacagaccttctacgtcaccctgcgctatggacgcatcctg
gacagagagcgtttcacacaggtgtttggggtacatcagatgctcaagtga

>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_5|499_aa
MAPPPAAGSKSHRPPEPLRAHARMYKAGVICVAPWELRSRNRGCRYSQALWERSPLLFPT
CPATQRPNPEVPGRVPRANVSCKVRLETGDMAAPGPALCLFDVDGTLTAPRQKITKEMDD
FLQKLRQKIKIGVVGGSDFEKVQEQLGNDESPAQDPEKPERLIDPFTGESDLIVVEKYDY
VFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGM
LNVSPIGRSCSQEERIEFYELDKVRLSEISLVNGWVYGNKIWPGGQISFDVFPDGWDKRY
CLRHVENDGYKTIYFFGDKTMPAGGVGYLAISRPVSGFLAILHLADFGTIRDLNINARIS
LSPGLSLVPVSYSGMQARHSPKKAAPQEGAHHALRVTKKEADPWRERKEGLRQVVFVMQM
LLRAVRLSESGVFSDGHMACALTSLRCQGSLTLQAWQPFPPFAQQGAQELSVDDWSPQGS
CDVVLVCAVSPAAKAMPGG

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_5|1500_bp
atggccccaccacctgctgccggaagtaaatcccaccggcccccggaacccctaagagcg
catgctcgaatgtacaaggcgggcgtgatctgcgttgcaccctgggagttgcggtccagg
aatcgtggctgccgctactcccaggcgttatgggaacggagtcccctcctcttcccgacg
tgccctgcgactcagcggccgaacccggaagttccgggccgagttcctcgtgccaacgtg
tcttgtaaggtgcggctagaaactggggacatggcagcgcctggcccagcgctctgcctc
ttcgacgtggatgggaccctcaccgccccgcggcagaaaattaccaaagaaatggatgac
ttcctacaaaaattgaggcagaagatcaaaatcggagtggtaggcggatcggactttgag
aaagtgcaggagcaactgggaaatgatgaatctccagcacaggaccccgaaaaaccagag
aggcttattgaccccttcactggagagtctgacttgatagtggttgaaaaatacgattat
gtgtttccagaaaatggcttggtagcatacaaagatgggaaactcttgtgtagacagaat
attcaaagtcatctgggtgaggccctaatccaagatttaatcaactactgtctgagctac
attgcgaaaattaaactcccgaagaagaggggtactttcattgaattccgaaatgggatg
ttaaacgtgtcccctattggaagaagctgcagccaagaagaacgcattgagttctacgaa
ctcgataaagtacgtctttctgaaatatctttggtgaatggctgggtttatggaaataag
atatggcctggaggccagatcagctttgatgtctttcctgatggatgggacaagagatac
tgtctgcgacatgtggaaaatgacggttataagaccatttatttctttggagacaaaact
atgccagctgggggtgttggttaccttgccatcagcaggcccgtgtcaggctttctcgcc
atcctgcacctagcagactttgggactattagggatttaaatattaatgcgcggatttca
ctgagccctggcctctctttggtgcctgtcagctactctggtatgcaagctcgacacagc
cccaagaaggctgcaccccaggaaggagcccaccatgctctgagagtcacaaagaaagaa
gcagacccttggcgggagagaaaggaaggcctgaggcaggttgtgtttgtgatgcagatg
ctcctgcgagccgtgcggctctctgaaagcggcgtcttctctgatggccacatggcctgt
gccctcacgtccctcagatgccagggttccctcaccctccaggcctggcagcccttccct
ccctttgctcaacaaggcgcccaagagctgtctgttgatgactggtctccccagggcagc
tgtgatgtggttttggtttgcgccgtatccccagctgctaaagcaatgcctggcgggtag

>gi568815582f:8635740_8881427|GENSCAN_predicted_peptide_6|489_aa
MKLVKLWALSELYDSEQVSSPRPIGRELLGAGIGAPPPLGPRPLPSSALSVGAKRLAEQN
GLQGSSSSAEEGSGLGFSGPVWGTRVAPPQGKGSAMSSEPPPPPQPPTHQASVGLLDTPR
SRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGG
PDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWKVLFH
RVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSADRRAAPLTVLWLG
SRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWGQEPPNPFSFTLSGKSRFSGGE
ASTPNSYLCAPIPYFHAPTPFPLFWRSDNGPAFTSQITQAVSQALSIQWNLHIPYSPQSS
GKVERTNGLLKLDDPDTHQAQQITWAVRPQGFTDSPHYFSQAQISSPSVTYLGIILIKTH
VLSLLIVSD

>gi568815582f:8635740_8881427|GENSCAN_predicted_CDS_6|1470_bp
atgaagttggtcaaactgtgggctctctccgagctgtatgactctgaacaggtgtcttct
cctcgccccattggccgggagctcctgggggcggggatcggcgccccaccccccctcggg
ccacgccccctccccagctccgcgctctcagtcggagcgaagcggctggcggagcagaac
ggattgcaggggtcttctagctcggcagaggagggctccgggctgggtttctcggggcct
gtttggggaacgcgggttgctcctccccaggggaaggggtcagccatgtcatctgagcct
cccccaccaccacagccccccacccatcaagcttcagtcgggctgctggacacccctcgg
agccgtgagcgctcaccatcccctctgcggggcaacgtggtcccaagcccactgcccact
cgccggacgaggaccttctcggcgacggtgcgggcttcacagggccccgtctacaaagga
gtctgcaaatgcttctgccggtccaagggccatggcttcattactccagctgatggcggc
cccgacatcttcctgcacatctctgatgtggaaggggagtatgtcccagtggaaggcgac
gaggtcacctataaaatgtgctccatcccacccaagaatgagaagctgcaggccgtggag
gtcgtcatcactcacctggcaccaggcaccaagcatgagacctggaaagttctcttccac
cgtgttctagctgagacccgggatccttccagtttcacgaagaacgtgcagaagatgaaa
agagtgagggacgcggacctagctgtagctgcactcagccgcctccgtggtaaagtctgg
gtgaaggcctgggtgagtgcagataggagagcagctcctcttactgttctctggctgggc
tctcgctccatccctgagaaactagaggcgaacgcctccaggaagccagccaggggcaac
cagaaagtccttttggtgaagtctgacatcccgcgttggtttctctggacctgggggcaa
gaaccccccaaccccttctccttcacccttagcggcaagtcccgcttttctgggggagag
gcaagtaccccaaactcgtatctctgtgccccaatcccttatttccatgccccaacccct
ttcccgcttttctggaggtctgataacggaccagcctttactagtcaaatcacccaagca
gtttctcaggctcttagtattcagtggaaccttcatatcccttacagtcctcaatcttca
ggaaaggtagaacggactaatggtcttttaaagttagatgaccctgacacccatcaggct
cagcaaattacctgggctgtacggccacaaggcttcacagacagcccccactacttcagt
caagcccaaatttcatccccatctgttacctatctcggcataattctcataaaaacacac
gtgctctccctgttgatcgtgtctgattaa