FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3388, 203 aa
  1>>>pF1KB3388 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4766+/-0.000795; mu= 13.3507+/- 0.048
 mean_var=79.0979+/-15.299, 0's: 0 Z-trim(109.2): 7  B-trim: 11 in 2/48
 Lambda= 0.144209
 statistics sampled from 10699 (10702) to 10699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS12768.1 RPL13A gene_id:23521|Hs108|chr19       ( 203) 1329 285.4 1.6e-77
CCDS74421.1 RPL13A gene_id:23521|Hs108|chr19       ( 142)  945 205.4 1.3e-53


>>CCDS12768.1 RPL13A gene_id:23521|Hs108|chr19            (203 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1505.3  bits: 285.4 E(32554): 1.6e-77
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB3 MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 RMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQ
              130       140       150       160       170       180

              190       200   
pF1KB3 AEKNVEKKIDKYTEVLKTHGLLV
       :::::::::::::::::::::::
CCDS12 AEKNVEKKIDKYTEVLKTHGLLV
              190       200   

>>CCDS74421.1 RPL13A gene_id:23521|Hs108|chr19            (142 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 1075.7  bits: 205.4 E(32554): 1.3e-53
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 142 aa overlap (62-203:1-142)

              40        50        60        70        80        90 
pF1KB3 KVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHK
                                     ::::::::::::::::::::::::::::::
CCDS74                               MNTNPSRGPYHFRAPSRIFWRTVRGMLPHK
                                             10        20        30

             100       110       120       130       140       150 
pF1KB3 TKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQA
               40        50        60        70        80        90

             160       170       180       190       200   
pF1KB3 VTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV
              100       110       120       130       140  




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:56:10 2016 done: Sat Nov  5 04:56:11 2016
 Total Scan time:  1.620 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]