Result of FASTA (omim) for pF1KB3122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3122, 218 aa
  1>>>pF1KB3122 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5721+/-0.000266; mu= 8.8448+/- 0.017
 mean_var=98.1584+/-20.287, 0's: 0 Z-trim(122.0): 39  B-trim: 2075 in 1/51
 Lambda= 0.129452
 statistics sampled from 39466 (39514) to 39466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.463), width:  16
 Scan time:  6.230

The best scores are:                                      opt bits E(85289)
NP_001166961 (OMIM: 300935) transmembrane gamma-ca ( 218) 1493 288.1 7.9e-78
NP_001166960 (OMIM: 300935) transmembrane gamma-ca ( 218) 1493 288.1 7.9e-78
NP_001135867 (OMIM: 300935) transmembrane gamma-ca ( 218) 1493 288.1 7.9e-78
NP_000941 (OMIM: 300935) transmembrane gamma-carbo ( 218) 1493 288.1 7.9e-78
NP_001166957 (OMIM: 300935) transmembrane gamma-ca (  82)  381 80.2 1.1e-15
NP_076987 (OMIM: 300685) transmembrane gamma-carbo ( 231)  362 76.8 3.2e-14
XP_005274804 (OMIM: 300685) PREDICTED: transmembra ( 231)  362 76.8 3.2e-14
XP_011529499 (OMIM: 300685) PREDICTED: transmembra ( 231)  362 76.8 3.2e-14
NP_000122 (OMIM: 227500,608446,613878) coagulation ( 466)  287 63.0 9.5e-10
XP_006720026 (OMIM: 227500,608446,613878) PREDICTE ( 412)  281 61.8 1.9e-09
NP_062562 (OMIM: 227500,608446,613878) coagulation ( 444)  281 61.9   2e-09
XP_011535776 (OMIM: 227500,608446,613878) PREDICTE ( 495)  281 61.9 2.2e-09
NP_001299604 (OMIM: 227600,613872) coagulation fac ( 332)  267 59.2 9.5e-09
NP_001299603 (OMIM: 227600,613872) coagulation fac ( 444)  267 59.2 1.2e-08
XP_005262454 (OMIM: 122700,300746,300807,306900) P ( 418)  266 59.0 1.3e-08
NP_000495 (OMIM: 227600,613872) coagulation factor ( 488)  267 59.3 1.3e-08
NP_000124 (OMIM: 122700,300746,300807,306900) coag ( 461)  266 59.1 1.4e-08
NP_001300842 (OMIM: 122700,300746,300807,306900) c ( 423)  245 55.1   2e-07
XP_011525426 (OMIM: 604429) PREDICTED: transmembra ( 179)  235 53.1 3.5e-07
NP_001303264 (OMIM: 604429) transmembrane gamma-ca ( 179)  235 53.1 3.5e-07
NP_000942 (OMIM: 604429) transmembrane gamma-carbo ( 202)  235 53.1 3.9e-07
XP_006723349 (OMIM: 604429) PREDICTED: transmembra ( 202)  235 53.1 3.9e-07
NP_001298186 (OMIM: 176930,188050,601367,613679,61 ( 606)  242 54.6   4e-07
NP_000497 (OMIM: 176930,188050,601367,613679,61439 ( 622)  242 54.6 4.1e-07
XP_006718377 (OMIM: 611690) PREDICTED: transmembra ( 226)  221 50.5 2.6e-06
NP_076986 (OMIM: 611690) transmembrane gamma-carbo ( 226)  221 50.5 2.6e-06
NP_000303 (OMIM: 176860,612283,612304) vitamin K-d ( 461)  224 51.2 3.3e-06
XP_005263774 (OMIM: 176860,612283,612304) PREDICTE ( 482)  224 51.2 3.4e-06
XP_016859995 (OMIM: 176860,612283,612304) PREDICTE ( 495)  224 51.2 3.5e-06
NP_003882 (OMIM: 176895,614024) vitamin K-dependen ( 400)  222 50.8 3.8e-06
XP_016873764 (OMIM: 611690) PREDICTED: transmembra ( 364)  221 50.6   4e-06
XP_016876302 (OMIM: 176895,614024) PREDICTED: vita ( 334)  218 50.0 5.4e-06
NP_001243063 (OMIM: 176895,614024) vitamin K-depen ( 422)  218 50.1 6.6e-06
XP_016876301 (OMIM: 176895,614024) PREDICTED: vita ( 467)  218 50.1 7.2e-06
NP_000304 (OMIM: 176880,612336,614514) vitamin K-d ( 676)  212 49.1 2.1e-05
NP_001301006 (OMIM: 176880,612336,614514) vitamin  ( 708)  212 49.1 2.2e-05
XP_016859994 (OMIM: 176860,612283,612304) PREDICTE ( 542)  196 46.0 0.00014
XP_006718376 (OMIM: 611690) PREDICTED: transmembra ( 288)  185 43.8 0.00034
NP_000811 (OMIM: 600441) growth arrest-specific pr ( 678)  180 43.1  0.0014


>>NP_001166961 (OMIM: 300935) transmembrane gamma-carbox  (218 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1518.3  bits: 288.1 E(85289): 7.9e-78
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
              130       140       150       160       170       180

              190       200       210        
pF1KB3 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
       ::::::::::::::::::::::::::::::::::::::
NP_001 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
              190       200       210        

>>NP_001166960 (OMIM: 300935) transmembrane gamma-carbox  (218 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1518.3  bits: 288.1 E(85289): 7.9e-78
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
              130       140       150       160       170       180

              190       200       210        
pF1KB3 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
       ::::::::::::::::::::::::::::::::::::::
NP_001 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
              190       200       210        

>>NP_001135867 (OMIM: 300935) transmembrane gamma-carbox  (218 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1518.3  bits: 288.1 E(85289): 7.9e-78
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
              130       140       150       160       170       180

              190       200       210        
pF1KB3 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
       ::::::::::::::::::::::::::::::::::::::
NP_001 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
              190       200       210        

>>NP_000941 (OMIM: 300935) transmembrane gamma-carboxygl  (218 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1518.3  bits: 288.1 E(85289): 7.9e-78
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVN
              130       140       150       160       170       180

              190       200       210        
pF1KB3 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
       ::::::::::::::::::::::::::::::::::::::
NP_000 LQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVVTTIK
              190       200       210        

>>NP_001166957 (OMIM: 300935) transmembrane gamma-carbox  (82 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 402.4  bits: 80.2 E(85289): 1.1e-15
Smith-Waterman score: 381; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTGLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSTYTKAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHI
                                                                   
NP_001 LLPRLECSCEHGSLQPQLPVPK                                      
               70        80                                        

>>NP_076987 (OMIM: 300685) transmembrane gamma-carboxygl  (231 aa)
 initn: 509 init1: 360 opt: 362  Z-score: 376.3  bits: 76.8 E(85289): 3.2e-14
Smith-Waterman score: 443; 38.1% identity (65.9% similar) in 226 aa overlap (4-203:3-226)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
          ::: .. :.:.:::.:::: :.::.:::.::::: ::.:..::..:.:::.::: ::
NP_076  MAVFLEAKDAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFENKEKTMEF
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB3 WSTYTKAQQG--ESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTR-------
       :. : .:  .  . ...::   .:.. ::.   ..:....:.:::: :.. ::       
NP_076 WKGYPNAVYSVRDPSQSSD--AMYVVVPLLGVALLIVIALFIIWRCQLQKATRHHPSYAQ
      60        70          80        90       100       110       

                120           130       140         150       160  
pF1KB3 -RQTVTE-GH-IP----FPQHLNIITPPPPPDEVFDSSG--LSPGFLGYVVGRSDSVS--
        :  ... :: .:    .   ..    :    :. .:    :.:.  : .. : .:.   
NP_076 NRYLASRAGHTLPRVMVYRGTVHSQGEPSGHREAANSPQVVLGPSRGGRTTVRLESTLYL
       120       130       140       150       160       170       

                   170        180       190       200       210    
pF1KB3 -----TRLSNCDPPPTYEEATG-QVNLQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVV
            .:::.  :::.:::.:. : . ..  .  . ::::.::.:: .:           
NP_076 PELSLSRLSSTTPPPSYEEVTAPQESSSEEASVSYSDPPPKYEEIVAANPGADK      
       180       190       200       210       220       230       

           
pF1KB3 TTIK

>>XP_005274804 (OMIM: 300685) PREDICTED: transmembrane g  (231 aa)
 initn: 509 init1: 360 opt: 362  Z-score: 376.3  bits: 76.8 E(85289): 3.2e-14
Smith-Waterman score: 443; 38.1% identity (65.9% similar) in 226 aa overlap (4-203:3-226)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
          ::: .. :.:.:::.:::: :.::.:::.::::: ::.:..::..:.:::.::: ::
XP_005  MAVFLEAKDAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFENKEKTMEF
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB3 WSTYTKAQQG--ESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTR-------
       :. : .:  .  . ...::   .:.. ::.   ..:....:.:::: :.. ::       
XP_005 WKGYPNAVYSVRDPSQSSD--AMYVVVPLLGVALLIVIALFIIWRCQLQKATRHHPSYAQ
      60        70          80        90       100       110       

                120           130       140         150       160  
pF1KB3 -RQTVTE-GH-IP----FPQHLNIITPPPPPDEVFDSSG--LSPGFLGYVVGRSDSVS--
        :  ... :: .:    .   ..    :    :. .:    :.:.  : .. : .:.   
XP_005 NRYLASRAGHTLPRVMVYRGTVHSQGEPSGHREAANSPQVVLGPSRGGRTTVRLESTLYL
       120       130       140       150       160       170       

                   170        180       190       200       210    
pF1KB3 -----TRLSNCDPPPTYEEATG-QVNLQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVV
            .:::.  :::.:::.:. : . ..  .  . ::::.::.:: .:           
XP_005 PELSLSRLSSTTPPPSYEEVTAPQESSSEEASVSYSDPPPKYEEIVAANPGADK      
       180       190       200       210       220       230       

           
pF1KB3 TTIK

>>XP_011529499 (OMIM: 300685) PREDICTED: transmembrane g  (231 aa)
 initn: 509 init1: 360 opt: 362  Z-score: 376.3  bits: 76.8 E(85289): 3.2e-14
Smith-Waterman score: 443; 38.1% identity (65.9% similar) in 226 aa overlap (4-203:3-226)

               10        20        30        40        50        60
pF1KB3 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF
          ::: .. :.:.:::.:::: :.::.:::.::::: ::.:..::..:.:::.::: ::
XP_011  MAVFLEAKDAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFENKEKTMEF
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB3 WSTYTKAQQG--ESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTR-------
       :. : .:  .  . ...::   .:.. ::.   ..:....:.:::: :.. ::       
XP_011 WKGYPNAVYSVRDPSQSSD--AMYVVVPLLGVALLIVIALFIIWRCQLQKATRHHPSYAQ
      60        70          80        90       100       110       

                120           130       140         150       160  
pF1KB3 -RQTVTE-GH-IP----FPQHLNIITPPPPPDEVFDSSG--LSPGFLGYVVGRSDSVS--
        :  ... :: .:    .   ..    :    :. .:    :.:.  : .. : .:.   
XP_011 NRYLASRAGHTLPRVMVYRGTVHSQGEPSGHREAANSPQVVLGPSRGGRTTVRLESTLYL
       120       130       140       150       160       170       

                   170        180       190       200       210    
pF1KB3 -----TRLSNCDPPPTYEEATG-QVNLQRSETEPHLDPPPEYEDIVNSNSASAIPMVPVV
            .:::.  :::.:::.:. : . ..  .  . ::::.::.:: .:           
XP_011 PELSLSRLSSTTPPPSYEEVTAPQESSSEEASVSYSDPPPKYEEIVAANPGADK      
       180       190       200       210       220       230       

           
pF1KB3 TTIK

>>NP_000122 (OMIM: 227500,608446,613878) coagulation fac  (466 aa)
 initn: 273 init1: 273 opt: 287  Z-score: 296.0  bits: 63.0 E(85289): 9.5e-10
Smith-Waterman score: 287; 51.6% identity (74.7% similar) in 91 aa overlap (3-87:43-133)

                                           10        20        30  
pF1KB3                             MGRVFLTGEKANSILKRYPRANGFFEEIRQGN
                                     :::.: :.:...:.:  :::.:.::.: :.
NP_000 LGLQGCLAAGGVAKASGGETRDMPWKPGPHRVFVTQEEAHGVLHRRRRANAFLEELRPGS
             20        30        40        50        60        70  

             40        50        60        70              80      
pF1KB3 IERECKEEFCTFEEAREAFENNEKTKEFWSTYTKAQQGES----NRGS--DWFQFYLTFP
       .::::::: :.:::::: :.. :.:: :: .:. ..:  :    : ::  : .: :. : 
NP_000 LERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC
             80        90       100       110       120       130  

         90       100       110       120       130       140      
pF1KB3 LIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHIPFPQHLNIITPPPPPDEVFDSSGLSP
       :                                                           
NP_000 LPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE
            140       150       160       170       180       190  

>>XP_006720026 (OMIM: 227500,608446,613878) PREDICTED: c  (412 aa)
 initn: 266 init1: 266 opt: 281  Z-score: 290.8  bits: 61.8 E(85289): 1.9e-09
Smith-Waterman score: 281; 49.5% identity (74.2% similar) in 93 aa overlap (1-87:34-126)

                                             10        20        30
pF1KB3                               MGRVFLTGEKANSILKRYPRANGFFEEIRQ
                                     .. ::.: :.:...:.:  :::.:.::.: 
XP_006 VNRQGQHCRDFIMVSQALRLLCLLLGLQGCLAAVFVTQEEAHGVLHRRRRANAFLEELRP
            10        20        30        40        50        60   

               40        50        60        70              80    
pF1KB3 GNIERECKEEFCTFEEAREAFENNEKTKEFWSTYTKAQQGES----NRGS--DWFQFYLT
       :..::::::: :.:::::: :.. :.:: :: .:. ..:  :    : ::  : .: :. 
XP_006 GSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYIC
            70        80        90       100       110       120   

           90       100       110       120       130       140    
pF1KB3 FPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHIPFPQHLNIITPPPPPDEVFDSSGL
       : :                                                         
XP_006 FCLPAFEGRNCETLEYPCGKIPILEKRNASKPQGRIVGGKVCPKGECPWQVLLLVNGAQL
           130       140       150       160       170       180   




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:51:43 2016 done: Sat Nov  5 04:51:44 2016
 Total Scan time:  6.230 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com