GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:38:04

Sequence gi568815596f:41948797_42157685 : 208889 bp : 46.63% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   3815   3935  121  2  1  121   46    55 0.507   2.55
 1.02 PlyA +   4523   4528    6                               1.05

 2.08 PlyA -   5227   5222    6                               1.05
 2.07 Term -   6300   6045  256  2  1  101   53   111 0.476   3.96
 2.06 Intr -   9179   9086   94  0  1   67   63    76 0.179   2.02
 2.05 Intr -  29604  29410  195  1  0   60   91    54 0.048   2.29
 2.04 Intr -  45254  45125  130  2  1   47   -6   202 0.118   6.97
 2.03 Intr -  52818  52764   55  2  1   -1   97    65 0.073  -2.52
 2.02 Intr -  59555  59389  167  2  2   98   51    83 0.051   4.36
 2.01 Init -  65421  65383   39  0  0   81   81     2 0.059  -1.01
 2.00 Prom -  68958  68919   40                              -3.56

 3.02 PlyA -  69190  69185    6                               1.05
 3.01 Sngl -  81638  81462  177  2  0   78   52   166 0.237   6.95
 3.00 Prom -  89584  89545   40                              -1.56

 4.00 Prom +  91984  92023   40                              -8.56
 4.01 Init +  99404 100042  639  1  0   84   96  1013 0.997  95.04
 4.02 Intr + 104443 104565  123  0  0  115   46   205 0.959  19.78
 4.03 Intr + 105240 105511  272  2  2   76   60   343 0.981  26.64
 4.04 Intr + 106145 106224   80  2  2  102   99    91 0.807  10.79
 4.05 Intr + 106490 106597  108  0  0   43  117   152 0.995  13.86
 4.06 Intr + 108425 108598  174  0  0   76   99   221 0.992  21.91
 4.07 Intr + 123510 123603   94  1  1   68   84    41 0.034   0.72
 4.08 Intr + 123674 123892  219  2  0    1   75   126 0.092   0.02
 4.09 Intr + 124231 124270   40  1  1   67   45    59 0.217  -2.27
 4.10 Intr + 124391 124479   89  1  2  114  119    78 0.891  12.27
 4.11 Intr + 126758 126840   83  2  2   52  127    26 0.736   2.18
 4.12 Intr + 152155 152301  147  2  0  -16   94    97 0.130   0.11
 4.13 Term + 152334 152971  638  1  2   67   44   215 0.576   9.41
 4.14 PlyA + 153893 153898    6                               1.05

 5.00 Prom + 156705 156744   40                              -2.76
 5.01 Init + 161478 161494   17  2  2   56   91    27 0.469  -0.22
 5.02 Intr + 163490 163553   64  2  1   90  115    27 0.655   4.32
 5.03 Intr + 169328 169473  146  1  2   80   92    76 0.650   6.28
 5.04 Term + 175390 175450   61  1  1   90   33    43 0.109  -3.72
 5.05 PlyA + 175773 175778    6                               1.05

 6.04 PlyA - 175932 175927    6                               1.05
 6.03 Term - 177537 177406  132  0  0   45   42   136 0.161   2.79
 6.02 Intr - 184462 184409   54  1  0   60  102    44 0.060   2.18
 6.01 Init - 194329 194156  174  1  0   46   73    98 0.202   3.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 108807 108892   86  1  2  111   43    63 0.874   1.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_1|40_aa
XSLEFSALRTYKLPRGLPDQPQLLPASFRQHISAALGHRS

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_1|123_bp
nnatccttggagttctccgcactcagaacctacaagctgcccaggggtcttccagaccag
ccccagttgcttccagcctccttccgccagcacatctctgcagccttgggccaccgatcc
taa

>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_2|311_aa
MTMAALWNRKGGKSLLIASAQMQLAVCHAREIPKLEDLGTRSSSGIYWQCGLKEVTLTLE
ISAPSAAKGQYQLSGITVLQDRRTSAKKVGDHPHIIFSASIDHVCVDSVDFIVIANTSEY
TIFTLYSFIAEFYLSFKALFKYLLHCGFFPDHPHAQLNAIFHLWSFLLVPLVFSNYCTVL
CNVELCPLQEGKLLAEPRTQRLLKGKDDHEDLATMFHKDQGRKAVGSEWQLGLLAAGSSP
EPVTRAQDELSRCICDNVAFIFITVDPVGGKPPFSHFSPHLSSQNSKLPPRRDCRFPGRG
KLCRTSSPEHS

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_2|936_bp
atgacaatggcggctttgtggaatagaaaggggggaaagagcctcctgattgcctcagcc
cagatgcagctggcagtgtgtcatgcgagggagatccctaaactagaagacctgggaact
agatctagctctggtatttactggcagtgtggacttaaggaagtcacattgactttagag
atctctgctccctctgctgcaaagggacaataccagctgagtggcatcactgtcctgcag
gacagacgtacaagtgccaagaaagtgggcgaccaccctcacatcatcttctctgcttct
attgaccatgtctgcgtggactccgtggactttatcgtcatcgccaacacctctgaatat
accatttttacattgtattcatttatcgctgaattctacctatccttcaaggctctgttc
aagtacctgctccactgtggattctttccagatcatccccatgcccaactgaatgccatt
ttccacttgtggagctttctgttggtgcctctggttttcagcaattactgcactgtactt
tgtaatgtagaattatgtcccctacaagaaggcaagctccttgcagagcccaggacacag
cgtttgctgaaaggcaaggatgaccatgaagacctagccaccatgttccacaaggaccag
gggagaaaagctgtgggaagtgagtggcagcttggactcttggctgcaggcagttctcct
gaaccggtcaccagggctcaggatgagctatccagatgcatctgtgacaatgtggctttc
atcttcatcacagttgaccccgtgggaggaaagccccctttctcccacttcagcccacat
ctctcttcccagaacagcaaactgccacccaggagggactgccgcttccctggtcgtggg
aaactctgcagaacctcctctcctgagcactcctga

>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_3|58_aa
MAILLWPACSPDYFSLIERKECEECGVDCLRRAAAADPLGDQGIRILGPGMGELQMAR

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_3|177_bp
atggccatcctgctgtggcctgcttgctcccctgattatttctccttaattgagcgtaaa
gaatgtgaggaatgtggagtagactgcctgaggagggctgctgcagccgaccccctcggg
gatcaggggatccggattctgggccctgggatgggagaactgcagatggcccgctga

>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_4|901_aa
MRRRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQI
RARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG
PGSPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVALKAVDFSGHDLGSCVR
EFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTLTTITELGAPVE
MIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDGELKVTDLDDAR
VEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFTYLLPHSAPPSL
RPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEYQCIPDSTIPQE
DYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTEVQREDARLSGSECA
MGPSRLPQLCIQPDVALCWQDGLSCSCWAAVQSDRQNAVYKGVETDNRWQLSTSWRLQRG
VADYLAFGNRALLPAGGPQPWAVPEGSSEMMRVQKGKLEVIVGLLLTDEEIESTLKMKSP
LYQNLNSPPTVIWQESDLYSAEFCRCPPLITLHKSKQYLHAETGTCGGLTVRSSVQVLSI
LFAGPHACRAPPQKAGPDSDQQGLQGRSAGLRQRLGRRLGVAGEPLHVLPFSRVHGALEA
QMLAKWRERSRDEDSGRGAPASARIPAHPPPRPAPAPTHWGSPALPEARAAPQEESQPFP
PRCAVCGLPAANRSASRSPAAPGSCPGSAVLLGIPGRPPPRPGPPDRPFQRLQARAVPPD
AGYTTRRCWNLSQPRVAAPGPGTPSPERPRRPLASELETEVDACSVTLGQIALPKPQFLH
L

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_4|2706_bp
atgcggcgccggcgggcggcagtggccgcgggtttctgcgcctccttcctgctgggctcc
gtcctcaacgtgctcttcgctccgggctcggagcctccgaggccaggccagtcccctgag
ccttcgccggccccgggtccgggccgtcgcgggggccgcggggagctggcccggcagatc
cgggcgcgctacgaggaggtgcagcgctattcccgcgggggccccgggcccggggcgggc
cggccggagcggcggcgcctgatggacctggctccgggcgggcccggcctgccgcgcccc
cggcccccttgggcccggcccctgtccgacggcgccccaggctggcccccggctcccggc
ccaggctcccccggcccgggcccgcgcctgggctgcgccgcgcttcgcaacgtgtccggc
gcgcagtacatgggctcaggctacaccaaggccgtgtaccgggtccgcctgcccggcggt
gccgcggtggcgctcaaggcggtggactttagcggccacgatctgggcagctgcgtgcgc
gagttcggggtacggaggggctgctatcggctggcggcccacaagctgcttaaggagatg
gtgctgctggagcggctgcggcaccccaacgtgctgcagctctatggctactgctaccag
gacagcgaggacatcccagacaccctgaccaccatcacggagctgggcgcccctgtagaa
atgatccagctgctgcaaacttcctgggaggatcgattccgaatctgcctgagcctgggc
cgcctcctccaccacctggcccactccccactgggctccgtcactctgctggacttccgc
cctcggcagtttgtgctggtggatggggagctcaaagtgacggacctggatgacgcacgt
gtggaggagacgccgtgtgcaggcagcaccgactgcatactcgagtttccggccaggaac
ttcaccctgccctgctcagcccagggctggtgcgagggcatgaacgagaagcggaacctc
tataatgcctacaggtttttcttcacatacctcctgcctcacagtgccccgccttcactg
cgtcctctgctggacagcatcgtcaacgccacaggagagctcgcctggggggtggacgag
accctggcccagctggagaaggtgctgcacctgtaccggagcgggcagtatctgcagaac
tccacggcaagcagcagtaccgagtaccagtgtatcccagacagcaccatcccccaggaa
gactaccgctgctggccatcctaccaccacgggagctgcctcctttcagtgttcaacctg
gctgaggctgtggatgtctgtgagagccatgcccagtgtcgggcctttgtggtcaccaac
cagaccacctggacagaggtccagagagaggatgcccgcctctctgggagtgagtgtgcc
atgggcccatccaggctaccccagctctgtattcaaccagatgtggctctgtgctggcag
gacggcctcagctgcagctgctgggcagctgtccagagtgacaggcagaatgcagtgtac
aagggtgtggaaacagacaacaggtggcagctcagcaccagttggcggctgcagagggga
gtggcagattatctagcatttggtaacagggcgttgctaccagcaggtggaccacagcca
tgggcagttccagaggggtcttctgaaatgatgagggtgcagaaagggaagttggaggtc
atcgtggggctcctacttactgatgaagaaatagaatcaactctcaaaatgaaaagccca
ctctatcagaacctaaacagccctccaacagtcatctggcaggagtcagatctgtatagt
gcagagttctgcagatgccctcccctcatcacgctgcacaaatccaagcagtaccttcac
gctgaaactgggacctgcggaggcctcactgtccggagcagcgtccaggtcctcagcatc
ctcttcgctgggccccacgcgtgtcgtgcgccaccccagaaggcagggcctgattcggat
cagcaggggctgcagggccgctctgcaggcctgaggcagagactgggcaggaggctgggc
gtggccggggagccccttcacgtgctccccttctcgagggttcacggggctctggaggcc
cagatgctggcaaagtggcgggagcgctccagggacgaggactcaggtcggggcgccccc
gccagcgccaggatccccgctcaccctccgccgcgccccgcccccgccccgacacactgg
gggagccccgccctccccgaggcccgcgcggcgccgcaggaggaatcccagccatttcct
ccacgctgcgcggtatgtggcctgcccgccgccaaccgcagcgcgagccggtccccagcc
gcgcctggcagctgccccggctccgccgtgctgctcgggattccgggaaggccgccccct
cgtcccgggccaccagaccggcctttccagcggctccaggcccgtgcagtcccgccggac
gccggctacaccacgcgccgctgctggaacctctcccagccccgcgtggccgcccccggc
ccaggcaccccctccccggaacgcccccgacggcccctcgcgtccgagctggaaactgaa
gttgacgcttgctccgtcaccctggggcaaattgctttgcctaagcctcagtttctccat
ctgtga

>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_5|95_aa
MNNRIRYYPQQHSSRPADLDYFLGSSQCPRDERTLKGHVSCDPTSSISITGEKLKQKLES
TPLLLTPNLHFYRILGSLHLTVLIIETSYFDLNTS

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_5|288_bp
atgaacaaccgaatcaggtattatccccagcagcacagcagcagaccagctgacctggac
tatttcttaggcagtagtcagtgtcccagggatgaaaggactttgaaaggtcatgtgtct
tgtgacccaactagcagcatcagcatcactggggagaaactcaagcagaagcttgagtct
actccactcttgctgacaccaaatctgcatttttacaggattcttggatctctccacctg
actgtcctcattattgaaacgtcatattttgacctcaacacttcatag

>gi568815596f:41948797_42157685|GENSCAN_predicted_peptide_6|119_aa
MTSEKDLSGPRKGGRKVKEESKQELNLGVNATVIMTHSLMVLKAGVALEKPGHSCITKEA
ASAELKTIRVDQRKCKERPAYPSSFTQSLEDFSEIYLYLVPSVAIAGQSCILAIWTWYS

>gi568815596f:41948797_42157685|GENSCAN_predicted_CDS_6|360_bp
atgacatcagaaaaggacctgagtggcccaagaaagggaggacggaaagtcaaggaggaa
agtaagcaggagttgaatttaggagtaaatgctacggtgattatgactcacagcctcatg
gtcctcaaggctggagtggcgttggagaaaccaggtcatagttgtataaccaaggaagct
gcttctgcagaattaaaaaccatcagagttgatcaaaggaagtgcaaggaaagacccgca
taccccagcagtttcactcagtccctcgaggacttcagtgaaatctacttgtacctggtg
cccagtgtggcaattgcaggtcagtcctgcatcctggccatctggacgtggtattcttaa