Result of FASTA (omim) for pF1KE0925
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0925, 328 aa
  1>>>pF1KE0925 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7251+/-0.000421; mu= 9.2363+/- 0.026
 mean_var=97.7035+/-19.254, 0's: 0 Z-trim(112.5): 62  B-trim: 139 in 1/54
 Lambda= 0.129754
 statistics sampled from 21388 (21450) to 21388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.251), width:  16
 Scan time:  5.910

The best scores are:                                      opt bits E(85289)
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 2159 414.7 1.4e-115
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 2147 412.4 6.5e-115
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 2082 400.2 2.9e-111
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 2076 399.1 6.4e-111
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 2076 399.2 7.6e-111
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 2070 398.0 1.6e-110
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 2064 396.9 3.6e-110
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 2064 396.9 3.6e-110
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 1982 381.5 1.3e-105
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 1980 381.2 1.8e-105
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 1970 379.3  6e-105
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 1590 308.1 1.4e-83
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 1578 305.9 6.8e-83
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 1423 276.9 4.9e-74
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 1423 276.9 4.9e-74
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 1423 276.9   5e-74
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 1423 276.9   5e-74
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 1423 276.9 5.1e-74
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 1423 276.9 5.1e-74
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 1423 276.9 5.1e-74
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 1423 276.9 5.1e-74
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 1311 255.8 5.5e-68
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 1311 255.8 5.5e-68
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 1299 253.6 2.6e-67
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 1299 253.6 2.6e-67
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 1246 243.8   4e-64
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 1244 243.4 5.6e-64
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 1244 243.4 5.6e-64
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 1234 241.4 1.1e-63
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 1216 238.1 1.2e-62
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319)  854 170.4 4.6e-42
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319)  854 170.4 4.6e-42
XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231)  736 148.2 1.5e-35
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714)  583 119.8 1.7e-26
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729)  583 119.8 1.8e-26
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737)  583 119.8 1.8e-26
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752)  583 119.8 1.8e-26
XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232)  575 118.1 1.8e-26
XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232)  575 118.1 1.8e-26
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711)  513 106.7 1.5e-22
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734)  513 106.7 1.6e-22
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230)  299 66.4 6.5e-11
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226)  285 63.8 3.9e-10
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194)  256 58.3 1.5e-08
NP_004172 (OMIM: 191342,613643,615491) ubiquitin c ( 223)  228 53.1 6.3e-07
XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin c ( 252)  162 40.8  0.0037
XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin c ( 261)  162 40.8  0.0038


>>NP_001186190 (OMIM: 610667) ubiquitin carboxyl-termina  (328 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 2196.2  bits: 414.7 E(85289): 1.4e-115
Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::::::::::::::::
NP_001 TLAEHQQLIPLVEKAKEKQNAKKAQETK
              310       320        

>>NP_057068 (OMIM: 610667) ubiquitin carboxyl-terminal h  (329 aa)
 initn: 1669 init1: 1639 opt: 2147  Z-score: 2184.1  bits: 412.4 E(85289): 6.5e-115
Smith-Waterman score: 2147; 99.7% identity (99.7% similar) in 329 aa overlap (1-328:1-329)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

               250       260       270       280       290         
pF1KE0 QLAEE-PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
              250       260       270       280       290       300

     300       310       320        
pF1KE0 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::
NP_057 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
              310       320         

>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina  (316 aa)
 initn: 2108 init1: 2082 opt: 2082  Z-score: 2118.6  bits: 400.2 E(85289): 2.9e-111
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::.:            
NP_001 TLAEHQQLIPLVEKGK            
              310                  

>>NP_001186191 (OMIM: 610667) ubiquitin carboxyl-termina  (326 aa)
 initn: 2076 init1: 2076 opt: 2076  Z-score: 2112.3  bits: 399.1 E(85289): 6.4e-111
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::              
NP_001 TLAEHQQLIPLVEKFEKHFEKTLLGK  
              310       320        

>>XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin carbo  (393 aa)
 initn: 2076 init1: 2076 opt: 2076  Z-score: 2111.0  bits: 399.2 E(85289): 7.6e-111
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:68-381)

                                             10        20        30
pF1KE0                               MTGNAGEWCLMESDPGVFTELIKGFGCRGA
                                     ::::::::::::::::::::::::::::::
XP_005 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       220       230       240       250       260       270       

              220       230       240       250       260       270
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI
       280       290       300       310       320       330       

              280       290       300       310       320        
pF1KE0 EEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::::::::::::::::::::::::::::::::              
XP_005 EEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK  
       340       350       360       370       380       390     

>>XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin carbo  (384 aa)
 initn: 2110 init1: 1639 opt: 2070  Z-score: 2105.1  bits: 398.0 E(85289): 1.6e-110
Smith-Waterman score: 2070; 99.4% identity (99.7% similar) in 317 aa overlap (1-316:68-384)

                                             10        20        30
pF1KE0                               MTGNAGEWCLMESDPGVFTELIKGFGCRGA
                                     ::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       220       230       240       250       260       270       

              220       230       240        250       260         
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
       280       290       300       310       320       330       

     270       280       290       300       310       320        
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::::::::::::::::::.:            
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK            
       340       350       360       370       380                

>>XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin carbo  (394 aa)
 initn: 1669 init1: 1639 opt: 2064  Z-score: 2098.9  bits: 396.9 E(85289): 3.6e-110
Smith-Waterman score: 2064; 99.7% identity (99.7% similar) in 315 aa overlap (1-314:68-382)

                                             10        20        30
pF1KE0                               MTGNAGEWCLMESDPGVFTELIKGFGCRGA
                                     ::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       220       230       240       250       260       270       

              220       230       240        250       260         
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
       280       290       300       310       320       330       

     270       280       290       300       310       320        
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::::::::::::::::::              
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK  
       340       350       360       370       380       390      

>>XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin carbo  (394 aa)
 initn: 1669 init1: 1639 opt: 2064  Z-score: 2098.9  bits: 396.9 E(85289): 3.6e-110
Smith-Waterman score: 2064; 99.7% identity (99.7% similar) in 315 aa overlap (1-314:68-382)

                                             10        20        30
pF1KE0                               MTGNAGEWCLMESDPGVFTELIKGFGCRGA
                                     ::::::::::::::::::::::::::::::
XP_016 AGLLRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGA
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQK
       220       230       240       250       260       270       

              220       230       240        250       260         
pF1KE0 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEE-PMDTDQGNSMLSAIQSEVAKNQML
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQML
       280       290       300       310       320       330       

     270       280       290       300       310       320        
pF1KE0 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::::::::::::::::::              
XP_016 IEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK  
       340       350       360       370       380       390      

>>XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin carbo  (319 aa)
 initn: 1982 init1: 1982 opt: 1982  Z-score: 2017.4  bits: 381.5 E(85289): 1.3e-105
Smith-Waterman score: 1982; 98.7% identity (99.4% similar) in 308 aa overlap (21-328:12-319)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
                           : .. :::::::::::::::::::::::::::::::::::
XP_005          MSLGWLERPPALSRAAGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
             240       250       260       270       280       290 

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::::::::::::::::
XP_005 TLAEHQQLIPLVEKAKEKQNAKKAQETK
             300       310         

>>XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin carbo  (348 aa)
 initn: 1980 init1: 1980 opt: 1980  Z-score: 2014.7  bits: 381.2 E(85289): 1.8e-105
Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 303 aa overlap (26-328:46-348)

                    10        20        30        40        50     
pF1KE0      MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFL
                                     ::::::::::::::::::::::::::::::
XP_016 FRYPGWTGAEAGRGRAIVSRRLPSLNPWDAGCRGAQVEEIWSLEPENFEKLKPVHGLIFL
          20        30        40        50        60        70     

          60        70        80        90       100       110     
pF1KE0 FKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFK
          80        90       100       110       120       130     

         120       130       140       150       160       170     
pF1KE0 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRL
         140       150       160       170       180       190     

         180       190       200       210       220       230     
pF1KE0 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKI
         200       210       220       230       240       250     

         240       250       260       270       280       290     
pF1KE0 AELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFI
         260       270       280       290       300       310     

         300       310       320        
pF1KE0 MELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::::::
XP_016 MELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK
         320       330       340        




328 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:31:59 2016 done: Sat Nov  5 04:32:00 2016
 Total Scan time:  5.910 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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