Result of FASTA (ccds) for pF1KE0925
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0925, 328 aa
  1>>>pF1KE0925 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5235+/-0.00101; mu= 10.3228+/- 0.061
 mean_var=87.8902+/-16.879, 0's: 0 Z-trim(105.4): 24  B-trim: 0 in 0/51
 Lambda= 0.136806
 statistics sampled from 8400 (8412) to 8400 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.258), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1         ( 328) 2159 436.1 1.8e-122
CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1          ( 329) 2147 433.8 9.4e-122
CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1         ( 316) 2082 420.9 6.6e-118
CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1         ( 326) 2076 419.7 1.5e-117
CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3            ( 729)  583 125.2 1.6e-28
CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13          ( 230)  299 69.0 4.3e-12


>>CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1              (328 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 2312.2  bits: 436.1 E(32554): 1.8e-122
Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::::::::::::::::
CCDS55 TLAEHQQLIPLVEKAKEKQNAKKAQETK
              310       320        

>>CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1               (329 aa)
 initn: 1669 init1: 1639 opt: 2147  Z-score: 2299.3  bits: 433.8 E(32554): 9.4e-122
Smith-Waterman score: 2147; 99.7% identity (99.7% similar) in 329 aa overlap (1-328:1-329)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

               250       260       270       280       290         
pF1KE0 QLAEE-PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELL
              250       260       270       280       290       300

     300       310       320        
pF1KE0 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
       :::::::::::::::::::::::::::::
CCDS13 KTLAEHQQLIPLVEKAKEKQNAKKAQETK
              310       320         

>>CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1              (316 aa)
 initn: 2108 init1: 2082 opt: 2082  Z-score: 2230.3  bits: 420.9 E(32554): 6.6e-118
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::.:            
CCDS55 TLAEHQQLIPLVEKGK            
              310                  

>>CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1              (326 aa)
 initn: 2076 init1: 2076 opt: 2076  Z-score: 2223.7  bits: 419.7 E(32554): 1.5e-117
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLK
              250       260       270       280       290       300

              310       320        
pF1KE0 TLAEHQQLIPLVEKAKEKQNAKKAQETK
       ::::::::::::::              
CCDS55 TLAEHQQLIPLVEKFEKHFEKTLLGK  
              310       320        

>>CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3                 (729 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 625.5  bits: 125.2 E(32554): 1.6e-28
Smith-Waterman score: 644; 40.8% identity (68.2% similar) in 289 aa overlap (4-272:2-284)

               10        20        30        40        50        60
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
CCDS28   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
                  10        20        30           40        50    

                        70        80        90       100       110 
pF1KE0 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  .: :: ::
CCDS28 ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCS--SVDLGPTL
           60        70        80        90       100         110  

             120       130       140       150           160       
pF1KE0 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
CCDS28 SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
            120       130       140       150       160       170  

       170       180       190        200       210           220  
pF1KE0 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
CCDS28 YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
            180       190       200       210       220       230  

            230         240       250       260       270       280
pF1KE0 IVSDRKMIYEQKIAELQ--RQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
       .: ::.. :: ..  :.  :: . : ..     ..   ::.. .....: ::        
CCDS28 VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
            240       250       260       270       280       290  

              290       300       310       320                    
pF1KE0 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK            
                                                                   
CCDS28 PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
            300       310       320       330       340       350  

>>CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13               (230 aa)
 initn: 177 init1:  98 opt: 299  Z-score: 330.6  bits: 69.0 E(32554): 4.3e-12
Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (8-223:6-227)

               10        20        30         40         50        
pF1KE0 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF--
              :  .:..: : ....: .: .   :  ......:: .  . .:: ....::  
CCDS94   MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI
                 10        20        30        40        50        

               60        70        80        90       100          
pF1KE0 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G
         :..      ::   :  ::   ....: ::.:.:::.: ... .. : ... .:.  :
CCDS94 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG
       60        70        80         90       100        110      

      110       120       130       140       150       160        
pF1KE0 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY
        ::..: : : :..   ..  : : :.:: .:.. :.. . :     :  :.  .::.. 
CCDS94 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL
        120       130       140       150          160       170   

      170       180       190       200       210       220        
pF1KE0 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK
       : :.:.:::::: .  ::. :  ...  .  .  : .: ... .  :.::: .:.     
CCDS94 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-DPDELRFNAIALSAA  
           180       190       200       210        220       230  

      230       240       250       260       270       280        
pF1KE0 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:31:59 2016 done: Sat Nov  5 04:31:59 2016
 Total Scan time:  1.940 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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