Result of FASTA (omim) for pF1KE0910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0910, 231 aa
  1>>>pF1KE0910 231 - 231 aa - 231 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4679+/-0.00038; mu= 18.4395+/- 0.023
 mean_var=59.3460+/-11.973, 0's: 0 Z-trim(111.7): 21  B-trim: 18 in 1/52
 Lambda= 0.166486
 statistics sampled from 20364 (20376) to 20364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.239), width:  16
 Scan time:  6.100

The best scores are:                                      opt bits E(85289)
NP_001305869 (OMIM: 114480,160998) ribosyldihydron ( 231) 1569 385.2 5.1e-107
NP_001277150 (OMIM: 114480,160998) ribosyldihydron ( 231) 1569 385.2 5.1e-107
NP_000895 (OMIM: 114480,160998) ribosyldihydronico ( 231) 1569 385.2 5.1e-107
NP_000894 (OMIM: 125860) NAD(P)H dehydrogenase [qu ( 274)  743 186.9   3e-47
NP_001277151 (OMIM: 114480,160998) ribosyldihydron ( 193)  657 166.1 3.9e-41
NP_001020604 (OMIM: 125860) NAD(P)H dehydrogenase  ( 240)  463 119.6 4.8e-27
NP_001020605 (OMIM: 125860) NAD(P)H dehydrogenase  ( 236)  315 84.0 2.4e-16
NP_001273066 (OMIM: 125860) NAD(P)H dehydrogenase  ( 202)  314 83.7 2.5e-16


>>NP_001305869 (OMIM: 114480,160998) ribosyldihydronicot  (231 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 2042.4  bits: 385.2 E(85289): 5.1e-107
Smith-Waterman score: 1569; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
              190       200       210       220       230 

>>NP_001277150 (OMIM: 114480,160998) ribosyldihydronicot  (231 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 2042.4  bits: 385.2 E(85289): 5.1e-107
Smith-Waterman score: 1569; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
              190       200       210       220       230 

>>NP_000895 (OMIM: 114480,160998) ribosyldihydronicotina  (231 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 2042.4  bits: 385.2 E(85289): 5.1e-107
Smith-Waterman score: 1569; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_000 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
              190       200       210       220       230 

>>NP_000894 (OMIM: 125860) NAD(P)H dehydrogenase [quinon  (274 aa)
 initn: 747 init1: 722 opt: 743  Z-score: 969.2  bits: 186.9 E(85289): 3e-47
Smith-Waterman score: 743; 48.9% identity (76.5% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
NP_000 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::::: ::.::::::::..::
NP_000 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       .   ::.   ..::.: ...: :.::.::::.. ::.  :..::   .:::.: : ::::
NP_000 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
NP_000 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
              190       200       210       220       230       240

NP_000 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
              250       260       270    

>>NP_001277151 (OMIM: 114480,160998) ribosyldihydronicot  (193 aa)
 initn: 656 init1: 656 opt: 657  Z-score: 859.5  bits: 166.1 E(85289): 3.9e-41
Smith-Waterman score: 1199; 83.1% identity (83.5% similar) in 231 aa overlap (1-231:1-193)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ-------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                          :::::::::::::::::::::::::::::::::::::::::
NP_001 -------------------GKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                                110       120       130       140  

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
            150       160       170       180       190   

>>NP_001020604 (OMIM: 125860) NAD(P)H dehydrogenase [qui  (240 aa)
 initn: 577 init1: 442 opt: 463  Z-score: 606.5  bits: 119.6 E(85289): 4.8e-27
Smith-Waterman score: 552; 41.6% identity (64.7% similar) in 221 aa overlap (1-221:1-187)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
NP_001 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::::: ::.::::::::..::
NP_001 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       .   ::.   ..::.:                                  :.. : ::::
NP_001 FIGEFAYTYAAMYDKG----------------------------------PFRSGILHFC
              130                                         140      

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
NP_001 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
        150       160       170       180       190       200      

NP_001 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
        210       220       230       240

>>NP_001020605 (OMIM: 125860) NAD(P)H dehydrogenase [qui  (236 aa)
 initn: 597 init1: 313 opt: 315  Z-score: 414.4  bits: 84.0 E(85289): 2.4e-16
Smith-Waterman score: 509; 39.8% identity (62.9% similar) in 221 aa overlap (1-221:1-183)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
NP_001 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::                   
NP_001 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ-------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                          .: :.::.::::.. ::.  :..::   .:::.: : ::::
NP_001 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
                                110       120       130       140  

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
NP_001 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
            150       160       170       180       190       200  

NP_001 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
            210       220       230      

>>NP_001273066 (OMIM: 125860) NAD(P)H dehydrogenase [qui  (202 aa)
 initn: 474 init1: 314 opt: 314  Z-score: 414.0  bits: 83.7 E(85289): 2.5e-16
Smith-Waterman score: 314; 49.5% identity (74.8% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
NP_001 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::  .  :             
NP_001 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQSGILHFCGFQVLEPQLTYS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                                                                   
NP_001 IGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKF
              130       140       150       160       170       180




231 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:27:31 2016 done: Sat Nov  5 04:27:32 2016
 Total Scan time:  6.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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