Result of FASTA (ccds) for pF1KE0910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0910, 231 aa
  1>>>pF1KE0910 231 - 231 aa - 231 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3303+/-0.00086; mu= 13.3362+/- 0.051
 mean_var=56.6259+/-11.715, 0's: 0 Z-trim(105.3): 24  B-trim: 369 in 1/51
 Lambda= 0.170438
 statistics sampled from 8339 (8347) to 8339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.256), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6            ( 231) 1569 393.9 4.6e-110
CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16          ( 274)  743 190.8 7.5e-49
CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6           ( 193)  657 169.6 1.3e-42
CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16          ( 240)  463 121.9 3.5e-28
CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16          ( 236)  315 85.5 3.1e-17
CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16          ( 202)  314 85.3 3.2e-17


>>CCDS4481.1 NQO2 gene_id:4835|Hs108|chr6                 (231 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 2089.4  bits: 393.9 E(32554): 4.6e-110
Smith-Waterman score: 1569; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS44 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
              190       200       210       220       230 

>>CCDS10883.1 NQO1 gene_id:1728|Hs108|chr16               (274 aa)
 initn: 747 init1: 722 opt: 743  Z-score: 990.5  bits: 190.8 E(32554): 7.5e-49
Smith-Waterman score: 743; 48.9% identity (76.5% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
CCDS10 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::::: ::.::::::::..::
CCDS10 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       .   ::.   ..::.: ...: :.::.::::.. ::.  :..::   .:::.: : ::::
CCDS10 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
CCDS10 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
              190       200       210       220       230       240

CCDS10 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
              250       260       270    

>>CCDS75388.1 NQO2 gene_id:4835|Hs108|chr6                (193 aa)
 initn: 656 init1: 656 opt: 657  Z-score: 878.7  bits: 169.6 E(32554): 1.3e-42
Smith-Waterman score: 1199; 83.1% identity (83.5% similar) in 231 aa overlap (1-231:1-193)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS75 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS75 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQ-------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                          :::::::::::::::::::::::::::::::::::::::::
CCDS75 -------------------GKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                                110       120       130       140  

              190       200       210       220       230 
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
            150       160       170       180       190   

>>CCDS32472.1 NQO1 gene_id:1728|Hs108|chr16               (240 aa)
 initn: 577 init1: 442 opt: 463  Z-score: 619.3  bits: 121.9 E(32554): 3.5e-28
Smith-Waterman score: 552; 41.6% identity (64.7% similar) in 221 aa overlap (1-221:1-187)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::::: ::.::::::::..::
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
       .   ::.   ..::.:                                  :.. : ::::
CCDS32 FIGEFAYTYAAMYDKG----------------------------------PFRSGILHFC
              130                                         140      

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
        150       160       170       180       190       200      

CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
        210       220       230       240

>>CCDS32471.1 NQO1 gene_id:1728|Hs108|chr16               (236 aa)
 initn: 597 init1: 313 opt: 315  Z-score: 422.8  bits: 85.5 E(32554): 3.1e-17
Smith-Waterman score: 509; 39.8% identity (62.9% similar) in 221 aa overlap (1-221:1-183)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
CCDS32 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::                   
CCDS32 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ-------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                          .: :.::.::::.. ::.  :..::   .:::.: : ::::
CCDS32 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC
                                110       120       130       140  

              190       200       210       220       230          
pF1KE0 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ         
       ::.:: ::....   .  . :  .. .:..::..:: : :.                   
CCDS32 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
            150       160       170       180       190       200  

CCDS32 KEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK
            210       220       230      

>>CCDS67067.1 NQO1 gene_id:1728|Hs108|chr16               (202 aa)
 initn: 474 init1: 314 opt: 314  Z-score: 422.6  bits: 85.3 E(32554): 3.2e-17
Smith-Waterman score: 314; 49.5% identity (74.8% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KE0 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTL
       :.:...::: ::.:  ::: ..:..:.  :...:  :. ::::::::.:  . ::::: :
CCDS67 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
       ..:  :.: .:.  :::.  :. ::. ::::.. :::::::  .  :             
CCDS67 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQSGILHFCGFQVLEPQLTYS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
                                                                   
CCDS67 IGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKF
              130       140       150       160       170       180




231 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:27:30 2016 done: Sat Nov  5 04:27:30 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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