Result of FASTA (omim) for pF1KE0677
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0677, 263 aa
  1>>>pF1KE0677 263 - 263 aa - 263 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3272+/-0.000276; mu= 7.7819+/- 0.017
 mean_var=167.3163+/-33.773, 0's: 0 Z-trim(123.9): 272  B-trim: 159 in 2/59
 Lambda= 0.099153
 statistics sampled from 44258 (44587) to 44258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.523), width:  16
 Scan time:  8.620

The best scores are:                                      opt bits E(85289)
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 1786 266.4 3.8e-71
XP_011538391 (OMIM: 606701) PREDICTED: dorsal root ( 298) 1268 192.3 8.5e-49
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411)  422 71.4 2.9e-12
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  403 68.8 2.4e-11
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343)  360 62.5 1.2e-09
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX  ( 231)  356 61.8 1.3e-09
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326)  356 61.9 1.7e-09
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284)  348 60.7 3.4e-09
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505)  352 61.5 3.5e-09
NP_039236 (OMIM: 167410,268220) paired box protein ( 518)  352 61.5 3.5e-09
NP_002575 (OMIM: 167410,268220) paired box protein ( 520)  352 61.5 3.5e-09
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314)  348 60.7 3.6e-09
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  343 60.1 7.2e-09
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184)  335 58.7   9e-09
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230)  335 58.8 1.1e-08
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  332 58.3 1.3e-08
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  336 59.1 1.3e-08
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  332 58.4 1.5e-08
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198)  330 58.0 1.6e-08
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217)  330 58.0 1.7e-08
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  332 58.4 1.7e-08
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  332 58.4 1.7e-08
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245)  330 58.1 1.8e-08
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  332 58.6 2.2e-08
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  332 58.6 2.2e-08
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  332 58.6 2.2e-08
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  332 58.6 2.2e-08
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436)  332 58.6 2.3e-08
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436)  332 58.6 2.3e-08
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436)  332 58.6 2.3e-08
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436)  332 58.6 2.3e-08
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302)  328 57.9 2.6e-08
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403)  330 58.3 2.6e-08
NP_001186699 (OMIM: 600036) homeobox protein OTX1  ( 354)  329 58.1 2.6e-08
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354)  329 58.1 2.6e-08
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355)  329 58.1 2.6e-08
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407)  330 58.3 2.6e-08
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479)  330 58.3   3e-08
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  330 58.3   3e-08
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484)  330 58.3   3e-08
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325)  327 57.8   3e-08
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505)  330 58.4 3.1e-08
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299)  325 57.4 3.4e-08
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331)  321 56.9 5.5e-08
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377)  314 56.0 1.2e-07
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377)  314 56.0 1.2e-07
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377)  314 56.0 1.2e-07
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382)  314 56.0 1.2e-07
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289)  308 55.0 1.8e-07
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289)  308 55.0 1.8e-07


>>NP_001263380 (OMIM: 606701) dorsal root ganglia homeob  (263 aa)
 initn: 1786 init1: 1786 opt: 1786  Z-score: 1398.2  bits: 266.4 E(85289): 3.8e-71
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
              190       200       210       220       230       240

              250       260   
pF1KE0 APPDGSQEKTSPTKEQSEAEKSV
       :::::::::::::::::::::::
NP_001 APPDGSQEKTSPTKEQSEAEKSV
              250       260   

>>XP_011538391 (OMIM: 606701) PREDICTED: dorsal root gan  (298 aa)
 initn: 1261 init1: 1261 opt: 1268  Z-score: 997.0  bits: 192.3 E(85289): 8.5e-49
Smith-Waterman score: 1683; 88.1% identity (88.1% similar) in 295 aa overlap (4-263:4-298)

               10        20        30        40        50        60
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
               10        20        30        40        50        60

               70                                           80     
pF1KE0 FTREELAMKINLTEARVQ-----------------------------------VWFQNRR
       ::::::::::::::::::                                   :::::::
XP_011 FTREELAMKINLTEARVQLANSCLKTELQIEINDTIIEHSEVEDHNFSLKGARVWFQNRR
               70        80        90       100       110       120

          90       100       110       120       130       140     
pF1KE0 AKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGP
              130       140       150       160       170       180

         150       160       170       180       190       200     
pF1KE0 AGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTAS
              190       200       210       220       230       240

         210       220       230       240       250       260   
pF1KE0 VATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
              250       260       270       280       290        

>>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox  (411 aa)
 initn: 409 init1: 330 opt: 422  Z-score: 341.2  bits: 71.4 E(85289): 2.9e-12
Smith-Waterman score: 422; 42.2% identity (62.3% similar) in 199 aa overlap (32-220:213-407)

              10        20        30        40        50        60 
pF1KE0 FYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVF
                                     :.::::::::  ::: :: :: .::::::.
NP_068 KEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVY
            190       200       210       220       230       240  

              70        80        90       100       110       120 
pF1KE0 TREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPP
       .::.:::. .::::::::::::::::::: :: .. :.  ..   :   :  .:  :   
NP_068 AREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQ
            250       260       270       280       290       300  

             130       140       150             160           170 
pF1KE0 PGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL------PGTLLNTAT----YAQALSHV
         . .   ...  : . .   : :  :  :.:.      ::.  ...:     . : :::
NP_068 IQNPSWLGNNG--AASPVPACVVPCDPV-PACMSPHAHPPGSGASSVTDFLSVSGAGSHV
            310         320        330       340       350         

             180       190       200       210       220       230 
pF1KE0 ASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTS
       .. . : : .    .: ::.     :  . .:.:.:.:::::.::: :.           
NP_068 GQTHMGSLFGAASLSP-GLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT       
     360       370        380       390       400       410        

             240       250       260   
pF1KE0 SSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV

>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30  (562 aa)
 initn: 420 init1: 348 opt: 403  Z-score: 324.7  bits: 68.8 E(85289): 2.4e-11
Smith-Waterman score: 456; 40.9% identity (61.1% similar) in 247 aa overlap (20-232:314-557)

                          10        20         30        40        
pF1KE0            MFYFHCPPQLEGTATFGNHSSG-DFDDGFLRRKQRRNRTTFTLQQLEAL
                                     :.: : ..:.:.::::: :::::  ::: :
NP_620 TEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEEL
           290       300       310       320       330       340   

       50        60        70        80        90        100       
pF1KE0 EAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER-GASDQEPGAKEP--
       : .: .::::::::::::::...::::::::::::::::::: :. ::. . ::   :  
NP_620 ERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGP
           350       360       370       380       390       400   

         110        120       130       140       150           160
pF1KE0 MAEVTP-PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP--SCLP--GTLLN
       .. . :  :  . .  ::   : ..  :  :  . . .. :. :  :  . ::  :. :.
NP_620 LSATHPLSPYLDASPFPPHHPALDS--AWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLG
           410       420         430       440       450       460 

                170                180                     190     
pF1KE0 TATY--AQALSHVASLKGG---------PLCSCCV-------PDPM-------GLSFLPT
        .:.  : .. : : .. .         :: :  .       : :        :    :.
NP_620 LSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPA
             470       480       490       500       510       520 

         200       210       220       230       240       250     
pF1KE0 YGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKE
        .  . :..:.:.::.::.::. : : . :.::.::.                       
NP_620 TAAADRRASSIAALRLKAKEHA-AQLTQLNILPGTSTGKEVC                  
             530       540        550       560                    

         260   
pF1KE0 QSEAEKSV

>>NP_006483 (OMIM: 136760,606014) homeobox protein arist  (343 aa)
 initn: 382 init1: 329 opt: 360  Z-score: 294.3  bits: 62.5 E(85289): 1.2e-09
Smith-Waterman score: 385; 39.1% identity (65.0% similar) in 197 aa overlap (30-215:150-334)

                10        20        30        40        50         
pF1KE0  MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPD
                                     . :.:::::::.  ::: :: :: .:::::
NP_006 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD
     120       130       140       150       160       170         

      60        70        80        90       100       110         
pF1KE0 VFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINS
       :..::.::.. .::::::::::::::::::: :: .. ::  ...:.. .      .:. 
NP_006 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQE--GRNPFTAA-----YDISV
     180       190       200       210         220            230  

     120       130       140       150         160       170       
pF1KE0 PPPGDQARSKKEALEAQQSLGRTVGPAGPFF--PSCLPGTLLNTATYAQALSHVASLKGG
        :  :.  . ...: :. . :   .:.:: .  :  .:.  ..   :..  . ::.. : 
NP_006 LPRTDSHPQLQNSLWASPGSG---SPGGPCLVSPEGIPSPCMS--PYSHPHGSVAGFMGV
            240       250          260       270         280       

       180       190        200               210       220        
pF1KE0 PLCSCCVPDPMGL-SFLPTYGCQS--------NRTASVATLRMKAREHSEAVLQSANLLP
       :  :   :  ... .: :: : .:         .. :...::.: .:             
NP_006 PAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT    
       290       300       310       320       330       340       

      230       240       250       260   
pF1KE0 STSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV

>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home  (231 aa)
 initn: 355 init1: 316 opt: 356  Z-score: 293.4  bits: 61.8 E(85289): 1.3e-09
Smith-Waterman score: 356; 38.2% identity (62.3% similar) in 212 aa overlap (22-220:25-227)

                  10        20         30        40        50      
pF1KE0    MFYFHCPPQLEGTATFGNHSSGD-FDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTH
                               ::  :..    :.::.:::::  ::: :: :: .::
XP_011 MDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTH
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 YPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRN
       ::::..::.::.. .::::::::::::::::::: :: .. :.  ::  .:      . .
XP_011 YPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQ--AKSHFAA-----TYD
               70        80        90       100         110        

        120       130       140       150              160         
pF1KE0 INSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP----SCL-PGTLL--NTATYAQALS
       :.  :  :.  . .. : : .. : .:  .. ..:    ::. : .    . ..:.   .
XP_011 ISVLPRTDSYPQIQNNLWAGNASGGSV-VTSCMLPRDTSSCMTPYSHSPRTDSSYTGFSN
           120       130       140        150       160       170  

     170       180            190       200       210       220    
pF1KE0 HVASLKGGPLCSCCVPDPM-----GLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSA
       :  ...  :: .  . . .     : .:  :      :..:.:.:::::.::.  .    
XP_011 HQNQFSHVPLNNFFTDSLLTGATNGHAF-ETKPEFERRSSSIAVLRMKAKEHTANISWAM
            180       190       200        210       220       230 

          230       240       250       260   
pF1KE0 NLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV

>>NP_008913 (OMIM: 601527,613456) ALX homeobox protein 1  (326 aa)
 initn: 355 init1: 316 opt: 356  Z-score: 291.5  bits: 61.9 E(85289): 1.7e-09
Smith-Waterman score: 356; 38.2% identity (62.3% similar) in 212 aa overlap (22-220:120-322)

                        10        20         30        40        50
pF1KE0          MFYFHCPPQLEGTATFGNHSSGD-FDDGFLRRKQRRNRTTFTLQQLEALEA
                                     ::  :..    :.::.:::::  ::: :: 
NP_008 TELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEK
      90       100       110       120       130       140         

               60        70        80        90       100       110
pF1KE0 VFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVT
       :: .::::::..::.::.. .::::::::::::::::::: :: .. :.  ::  .:   
NP_008 VFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQ--AKSHFAA--
     150       160       170       180       190         200       

              120       130       140       150              160   
pF1KE0 PPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP----SCL-PGTLL--NTAT
          . .:.  :  :.  . .. : : .. : .:  .. ..:    ::. : .    . ..
NP_008 ---TYDISVLPRTDSYPQIQNNLWAGNASGGSV-VTSCMLPRDTSSCMTPYSHSPRTDSS
            210       220       230        240       250       260 

           170       180            190       200       210        
pF1KE0 YAQALSHVASLKGGPLCSCCVPDPM-----GLSFLPTYGCQSNRTASVATLRMKAREHSE
       :.   .:  ...  :: .  . . .     : .:  :      :..:.:.:::::.::. 
NP_008 YTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAF-ETKPEFERRSSSIAVLRMKAKEHTA
             270       280       290        300       310       320

      220       230       240       250       260   
pF1KE0 AVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
        .                                           
NP_008 NISWAM                                       
                                                    

>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob  (284 aa)
 initn: 402 init1: 343 opt: 348  Z-score: 286.1  bits: 60.7 E(85289): 3.4e-09
Smith-Waterman score: 363; 49.0% identity (61.9% similar) in 147 aa overlap (30-158:87-231)

                10        20        30        40        50         
pF1KE0  MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPD
                                     .::::: :::::  ::. :: :::.:::::
NP_005 CALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPD
         60        70        80        90       100       110      

      60        70        80        90           100       110     
pF1KE0 VFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQ----EPGAKEPMAEVT-----
       ..::::::.::.::::::::::::::::.:: ::.:: .      :::.  :. .     
NP_005 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDD
        120       130       140       150       160       170      

                     120         130       140       150       160 
pF1KE0 -------PPPVRNINSPPPGDQ--ARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNT
              : :  . . :::     :  .        .::   :: ::  :. : :.:   
NP_005 SKESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGP-GPG-PQPLKGALWAG
        180       190       200       210       220         230    

             170       180       190       200       210       220 
pF1KE0 ATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVL
                                                                   
NP_005 VAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF          
          240       250       260       270       280              

>>NP_001128726 (OMIM: 167410,268220) paired box protein   (505 aa)
 initn: 396 init1: 318 opt: 352  Z-score: 285.9  bits: 61.5 E(85289): 3.5e-09
Smith-Waterman score: 352; 45.8% identity (67.6% similar) in 142 aa overlap (29-169:213-350)

                 10        20        30        40        50        
pF1KE0   MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYP
                                     :.:::::.::::: .::: :: .: .::::
NP_001 KAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP
            190       200       210       220       230       240  

       60        70        80        90       100       110        
pF1KE0 DVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNIN
       :..::::::.. .::::::::::.::::.::: . :: .:  . .. .    ::   .. 
NP_001 DIYTREELAQRTKLTEARVQVWFSNRRARWRK-QAGA-NQLAAFNHLLPGGFPPT--GMP
            250       260       270         280       290          

      120       130       140       150        160       170       
pF1KE0 SPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL-PGTLLNTATYAQALSHVASLKGG
       . :: .   :   .   .:. : ::    :. :: .  : :  .:. :.. :        
NP_001 TLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSF
      300       310       320       330       340       350        

       180       190       200       210       220       230       
pF1KE0 PLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPV
                                                                   
NP_001 SSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATS
      360       370       380       390       400       410        

>>NP_039236 (OMIM: 167410,268220) paired box protein Pax  (518 aa)
 initn: 374 init1: 318 opt: 352  Z-score: 285.8  bits: 61.5 E(85289): 3.5e-09
Smith-Waterman score: 352; 45.8% identity (67.6% similar) in 142 aa overlap (29-169:211-348)

                 10        20        30        40        50        
pF1KE0   MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYP
                                     :.:::::.::::: .::: :: .: .::::
NP_039 KAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP
              190       200       210       220       230       240

       60        70        80        90       100       110        
pF1KE0 DVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNIN
       :..::::::.. .::::::::::.::::.::: . :: .:  . .. .    ::   .. 
NP_039 DIYTREELAQRTKLTEARVQVWFSNRRARWRK-QAGA-NQLAAFNHLLPGGFPPT--GMP
              250       260       270         280       290        

      120       130       140       150        160       170       
pF1KE0 SPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL-PGTLLNTATYAQALSHVASLKGG
       . :: .   :   .   .:. : ::    :. :: .  : :  .:. :.. :        
NP_039 TLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSF
        300       310       320       330       340       350      

       180       190       200       210       220       230       
pF1KE0 PLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPV
                                                                   
NP_039 SSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATS
        360       370       380       390       400       410      




263 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:17:00 2016 done: Sat Nov  5 04:17:01 2016
 Total Scan time:  8.620 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com