GENSCAN 1.0 Date run: 5-Nov-116 Time: 04:02:37 Sequence gi568815586f:80617064_80819048 : 201985 bp : 35.90% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 2321 2479 159 0 0 94 54 97 0.940 5.94 1.02 Intr + 3091 3313 223 2 1 47 89 117 0.466 3.96 1.03 Intr + 4998 5071 74 0 2 85 82 16 0.410 -1.17 1.04 Term + 5944 6080 137 2 2 49 38 103 0.245 -1.40 1.05 PlyA + 6456 6461 6 1.05 2.00 Prom + 6773 6812 40 -1.15 2.01 Init + 7919 8048 130 1 1 74 49 77 0.715 2.76 2.02 Intr + 15129 15228 100 1 1 123 116 -24 0.909 2.15 2.03 Intr + 17882 18010 129 2 0 64 89 189 0.922 15.49 2.04 Intr + 32525 32606 82 2 1 25 88 43 0.197 -3.28 2.05 Intr + 35681 35771 91 1 1 94 50 49 0.495 0.35 2.06 Intr + 40922 40998 77 0 2 96 84 115 0.966 10.22 2.07 Intr + 51944 52078 135 1 0 84 114 13 0.758 3.34 2.08 Intr + 52276 52401 126 0 0 74 60 97 0.952 5.46 2.09 Intr + 53281 53429 149 0 2 65 94 27 0.716 -0.89 2.10 Intr + 56106 56241 136 0 1 79 99 28 0.723 2.65 2.11 Intr + 61539 61711 173 2 2 87 107 11 0.094 0.72 2.12 Intr + 85918 86026 109 1 1 104 61 27 0.055 0.97 2.13 Intr + 90630 91175 546 2 0 18 75 620 0.005 45.85 2.14 Intr + 91461 91893 433 2 1 105 17 202 0.080 7.09 2.15 Intr + 99855 100501 647 1 2 47 103 727 0.300 60.87 2.16 Term + 129214 129375 162 0 0 51 47 129 0.095 2.05 2.17 PlyA + 130795 130800 6 1.05 3.03 PlyA - 131457 131452 6 1.05 3.02 Term - 150632 150447 186 2 0 47 45 132 0.751 1.31 3.01 Init - 159088 159035 54 1 0 83 64 74 0.406 5.84 3.00 Prom - 162980 162941 40 -6.75 4.05 PlyA - 165087 165082 6 1.05 4.04 Term - 169484 169289 196 1 1 60 44 172 0.612 5.90 4.03 Intr - 171157 170961 197 1 2 72 37 137 0.620 4.29 4.02 Intr - 171491 171277 215 0 2 66 107 70 0.659 4.21 4.01 Init - 173157 173010 148 0 1 75 89 129 0.991 12.00 4.00 Prom - 178779 178740 40 -6.55 5.03 PlyA - 179061 179056 6 1.05 5.02 Term - 188287 188117 171 1 0 105 41 168 0.990 10.64 5.01 Init - 188830 188783 48 1 0 68 43 44 0.839 -1.10 5.00 Prom - 190405 190366 40 -6.15 6.02 PlyA - 191279 191274 6 1.05 6.01 Term - 194620 194402 219 1 0 73 43 415 0.920 31.56 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Intr + 101295 101370 76 2 1 69 95 47 0.856 1.67 S.002 Term - 180663 180586 78 0 0 140 39 72 0.883 4.28 S.003 Init - 181209 181162 48 0 0 69 76 20 0.842 -0.10 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_1|197_aa XPARPKTKPTPIYDATGKLLVTSTTITIRMPICYYSDDHGPIKNVQVLVTETGAQHDGNV TKWYDAYFNKARPYFTNEGFPNPPCTEGKTKFSGNEEIYIIGADNACMIPGNEDKICNGP LKPKKQYLFKFRATNIMGQFTDSDYSDPVKTLGPQKPQFIRLKELHEQGISGAPLENVRL HVLPRSWRAVAQCILNC >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_1|594_bp nctccagcacgaccaaaaaccaaaccaacccctatttatgatgccacaggaaaactgctt gtgacttcaacaacaattacaatcagaatgccaatatgttactacagtgatgatcatgga ccaataaaaaatgtacaagtgcttgtgacagaaacaggagctcagcatgatggaaatgta acaaagtggtatgatgcatattttaataaagcaaggccatattttacaaatgaaggcttt cctaaccctccatgtacagaaggaaagacaaagtttagtggcaatgaagaaatctacatc ataggtgctgataatgcatgcatgattcctggcaatgaagacaaaatttgcaatggacca ctgaaaccaaaaaagcaatacttatttaaatttagagctacaaatattatgggacaattt actgactctgattattctgaccctgttaagactttaggccctcaaaagccccagtttatt cgtcttaaagaattgcatgaacagggtatttctggggcaccacttgaaaatgtaagactt catgtgttgcccagatcctggcgagctgttgctcagtgtatcttgaactgctaa >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_2|1074_aa MQPMSCELDKLATDSKEFLVKEHCQGRNSRRTQKENKVDQFSNGEGLSERTVEIILSVTL CILSIILLGTAIFAFARIRQKQKEGGTYSPQDAEIIDTKLKLDQLITVADLELKDERLTR PISKKSFLQHVEELCTNNNLKFQEEFSELPKFLQDLSSTDADLPWNRAKNRFPNIKPYNN NRVKLIADASVPGSDYINASYISGYLCPNEFIATQGPLPGTVGDFWRMVWETRAKTLVML TQCFEKGRIRCHQYWPEDNKPVTVFGDIVITKLMEDVQIDWTIRDLKIERHGDCMTVRQC NFTAWPEHGVPENSAPLIHFVKLVRASRAHDTTPMIVHCSAGVGRTGVFIALDHLTQHIN DHDFVDIYGLVAELRSERMCMVQNLAQYIFLHQCILDLLSNKGSNQPICFVNYSALQKMD SLDAMEGKQKQQYMPSLLVYHLRFSEVTQMFCRSKCKTIFTTAFGNLWAQTVCRLGKLQI ESEAKEENMMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEA GSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQE NLEGADFLRTCSSQWPSVSDHSRGLVITAKEGKVKGLWAAPEKIREVDRMLGPRGLEARA GTRPAKRALFARRDQAFPRCQSGLARGAELLRVPSLGAMFVCCFFAQEEQVLIRQPRVAF DAFLPSWTVFPRRNANSPAWRKWWRSQQASALVNYRSDRLGSSARDLPIGGGARLPFLPI PLAAVQVHRLPLSRMDVMDGCQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGAHKAEL QGSDEDEHVRAPTGHHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETL KRCTTTNPNQRLPKVEILRNAIRYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDG MKERINFSVSLAMPRQNAADSQATAACIAEPKQPTSAKAIMALWAIFAEIESIA >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_2|3225_bp atgcagcccatgagctgcgagttggacaagctcgccacagattcaaaagagttcttagta aaagaacattgccagggaagaaactctagaagaactcaaaaagaaaacaaagttgatcaa ttctccaatggggaaggactttcagaaagaaccgtagagatcattctttccgtcactttg tgtatcctttcaataattctccttggaacagctatttttgcatttgcaagaattcgacag aagcagaaagaaggtggcacatactctcctcaggatgcagaaattattgacactaaattg aagctggatcagctcatcacagtggcagacctggaactgaaggacgagagattaacgcgg ccaataagcaagaaatccttcctgcaacatgttgaagagctttgcacaaacaacaaccta aagtttcaagaagaattttcggaattaccaaaatttcttcaggatctttcttcaactgat gctgatctgccttggaatagagcaaaaaaccgcttcccaaacataaaaccatataataat aacagagtaaagctgatagctgacgctagtgttccaggttcggattatattaatgccagc tatatttctggttatttatgtccaaatgaatttattgctactcaaggtccactaccagga acagttggagatttttggagaatggtgtgggaaaccagagcaaaaacattagtaatgcta acacagtgttttgaaaaaggacggatcagatgccatcagtattggccagaggacaacaag ccagttactgtctttggagatatagtgattacaaagctaatggaggatgttcaaatagat tggactatcagggatctgaaaattgaaaggcatggggattgcatgactgttcgacagtgt aactttactgcctggccagagcatggggttcctgagaacagcgcccctctaattcacttt gtgaagttggttcgagcaagcagggcacatgacaccacacctatgattgttcactgcagt gctggagttggaagaactggagtttttattgctctggaccatttaacacaacatataaat gaccatgattttgtggatatatatggactagtagctgaactgagaagtgaaagaatgtgc atggtgcagaatctggcacagtatatctttttacaccagtgcattctggatctcttatca aataagggaagtaatcagcccatctgttttgttaactattcagcacttcagaagatggac tctttggacgccatggaaggtaaacagaaacaacagtatatgcccagcttactagtttac cacctacggttctctgaagtgactcagatgttctgtaggtctaagtgcaaaactattttt accacagcgtttgggaatctctgggcacaaactgtctgccgattaggtaaattacagatc gagtcagaggccaaggaggagaacatgatgatggacctttttgaaactggctcctatttc ttctacttggatggggaaaatgttactctgcagccattagaagtggcagaaggctctcct ttgtatccagggagtgatggtaccttgtccccctgccaggaccaaatgcccccggaagcg gggagcgacagcagcggagaggaacatgtcctggcgcccccgggcctgcagcctccacac tgccccggccagtgtctgatctgggcttgcaagacctgcaagagaaaatctgcccccact gaccggcgaaaagccgccaccctgcgcgaaaggaggaggctaaagaaaatcaacgaggcc ttcgaggcactgaagcggcgaactgtggccaaccccaaccagaggctgcccaaggtggag attctgcggagcgccatcagctatattgagcggctgcaggacctgctgcaccggctggat cagcaggagaagatgcaggagctgggggtggaccccttcagctacagacccaaacaagaa aatcttgagggtgcggatttcctgcgcacctgcagctcccagtggccaagtgtttccgat cattccagggggctcgtgataacggctaaggaaggtaaagtaaaagggctctgggccgca ccagagaaaatccgggaggtggataggatgcttgggccgagagggctcgaagcgagagca gggacgcgccctgcgaaaagggcgctctttgcgcgccgggaccaggcctttcctcgctgc caaagcggcctcgcgcggggcgcggagctgcttcgtgttccttctttgggtgctatgttt gtgtgttgttttttcgctcaggaggagcaagtattgattcgtcagcctcgagtagccttc gatgcctttcttccatcgtggacagtatttcctcggaggaacgcaaactcccctgcgtgg aggaagtggtggagaagccaacaggcgtctgcccttgttaattaccggagcgacagacta gggagctccgcccgggatttgcccatcggcggaggcgccaggctcccgtttctccccatc cctctcgctgccgtccaggtgcaccgcctgcctctcagcaggatggacgtgatggatggc tgccagttctcaccttctgagtacttctacgacggctcctgcataccgtcccccgagggt gaatttggggacgagtttgtgccgcgagtggctgccttcggagcgcacaaagcagagctg cagggctcagatgaggacgagcacgtgcgagcgcctaccggccaccaccaggctggtcac tgcctcatgtgggcctgcaaagcctgcaagaggaagtccaccaccatggatcggcggaag gcagccactatgcgcgagcggaggcgcctgaagaaggtcaaccaggctttcgaaaccctc aagaggtgtaccacgaccaaccccaaccagaggctgcccaaggtggagatcctcaggaat gccatccgctacatcgagagcctgcaggagttgctgagagagcaggtggagaactactat agcctgccgggacagagctgctcggagcccaccagccccacctccaactgctctgatggc atgaaagaacgaatcaatttttctgtctcacttgcaatgccaaggcagaatgcagctgac agtcaagctacagcagcttgcattgcagaacccaagcagccgacatctgccaaggccatt atggcattatgggccatttttgctgagatagaatcaattgcctga >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_3|79_aa MAEGKREAVTFFTWQQGGTTVAVIGLLPDAYSKSIHQDAELAQRKRFNCRVTEQGDGKKP QIHLPEEFEDKIFKGFGVN >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_3|240_bp atggcagaaggcaaacgagaagcagtcaccttctttacatggcagcaaggcggaactacc gtagctgtaataggcttattgcctgatgcatacagcaagtcaatacaccaagatgctgag ctggcgcagagaaagagattcaattgtagggtcactgaacaaggagatgggaagaagcct caaatccatctccctgaagaatttgaggataaaatttttaagggttttggagtgaactga >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_4|251_aa MQEQWQAFNPIGSGNGHLAGSGAQRAPCWIQRDGSQWRVCDSGKTAVVDGEINSHVAHTK PVWWSLHTDAHEIWCRDSDWGTFLGRSIPCPPALCFMRKIHLRPQVLRPTSPRNISPISN LRQRRYVLSVDPKLWCRSRTSEGSLPLVFNHWRDASLIIHPGFGGVRPLRDACLGPSPLA ASPAFLGSLLQVPEIWPPGQGMPAAQIPPKPRPICVGPHWKSDCPTHLAATPRAPGTLAQ GSLTPSQIFLV >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_4|756_bp atgcaggaacaatggcaagcctttaacccaatcgggagtggcaatgggcaccttgctgga tcaggagcacagcgggcaccctgctggatccagagggatggaagtcagtggcgggtctgt gacagcggcaaaacagcagtggtggatggtgaaataaacagccatgttgctcatacaaag cctgtttggtggtctcttcacacggacgcgcatgaaatttggtgccgtgactcggattgg gggaccttccttgggagatcaatcccctgtcctcctgctctttgcttcatgagaaagatc cacctacgacctcaggtcctcagaccaaccagcccaagaaacatctcaccaatttcaaat ctgagacaaaggagatacgttttatccgtggacccaaaactctggtgccggtcacggact agtgaaggcagccttcccttggtgtttaatcattggagggacgcttctctgattattcac ccaggtttcggaggtgtcagaccactcagggatgcctgccttggtccttcacccttagca gcaagtcctgcttttctggggagcttgctacaagtgccagaaatctggccaccaggccaa ggaatgcctgcagcccagattcctcctaagccgcgtcccatctgtgtgggaccccactgg aaatcggactgtccaactcacctggcagccactcccagagcccctggaactctggcccaa ggctctctgactccttcccagatcttcttggtttag >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_5|72_aa MRNKHKQKPLINPSDLHYHMHDPDDLIQGIITKTIRLVTKKTKFQGMTPIKSNARNPEFP SRTPDRNNHKAD >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_5|219_bp atgaggaataaacacaagcagaaacccctgataaacccatcagatctccattaccacatg catgatcctgatgatctaatccagggaattattacgaaaactatccgcctagtcactaag aaaaccaagttccaggggatgactccaataaaatcgaatgcaaggaacccagagtttcca agcagaacaccggacagaaataatcataaagctgactaa >gi568815586f:80617064_80819048|GENSCAN_predicted_peptide_6|72_aa SVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQ QQQQQTQQNHMS >gi568815586f:80617064_80819048|GENSCAN_predicted_CDS_6|219_bp agtgtggaaggagaacaccatgagaaagctgtggaactactcaaggctgctaaagacagc gtcaagctggtggtgcgatacaccccaaaagttctggaagaaatggaggctcgctttgaa aagctacgaacagccaggcgtcggcagcagcagcaattgctaattcagcagcagcaacag cagcagcagcaacaaacacaacaaaaccacatgtcatag