FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0844, 301 aa
  1>>>pF1KE0844 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2690+/-0.000972; mu= 15.4539+/- 0.058
 mean_var=65.5535+/-13.502, 0's: 0 Z-trim(104.6): 49  B-trim: 466 in 1/47
 Lambda= 0.158408
 statistics sampled from 7947 (7984) to 7947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19       ( 301) 2020 470.6 6.6e-133
CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19       ( 395) 1130 267.2 1.4e-71
CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19        ( 353)  815 195.2 5.9e-50


>>CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19            (301 aa)
 initn: 2020 init1: 2020 opt: 2020  Z-score: 2499.6  bits: 470.6 E(32554): 6.6e-133
Smith-Waterman score: 2020; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KE0 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLIVKHLIVANFLALRCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLIVKHLIVANFLALRCK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GVPQTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVFQVITVSSRKSRWAKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVPQTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVFQVITVSSRKSRWAKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKIAQTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKIAQTLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AMLLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQHIDRSNLSPRASPENRATQSILILVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AMLLSFPDVLCLGLMLWVSSSMVCILHRHKQRVQHIDRSNLSPRASPENRATQSILILVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TFVSSYTLSCLFQVCMALLDNPNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TFVSSYTLSCLFQVCMALLDNPNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWK
              250       260       270       280       290       300

        
pF1KE0 R
       :
CCDS33 R
        

>>CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19            (395 aa)
 initn: 1111 init1: 1111 opt: 1130  Z-score: 1398.6  bits: 267.2 E(32554): 1.4e-71
Smith-Waterman score: 1130; 57.1% identity (80.6% similar) in 294 aa overlap (3-296:85-378)

                                           10        20        30  
pF1KE0                             MASRYVAVGMILSQTVVGVLGSFSVLLHYLSF
                                     .. :..   : :.:::.::.::.: .:. .
CCDS12 VPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFL
           60        70        80        90       100       110    

             40        50        60        70        80        90  
pF1KE0 YCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRVGRG
       :  : . ::::::..:: ::. :..  : .:.:::.::...: : .:::...: ::::::
CCDS12 YFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRG
          120       130       140       150       160       170    

            100       110       120       130       140       150  
pF1KE0 VSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGK
       ::::.:::::::::::.. :.::::..: ::: ..:.: .:::   :::: :::.:.:::
CCDS12 VSIGSTCLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGK
          180       190       200       210       220       230    

            160       170       180       190       200       210  
pF1KE0 WNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCLGLMLWVSSSMVCILHRHKQR
       :. .::: . ::::::.  ........ : : :: ::::::::::.:::.: .:.::::.
CCDS12 WSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQ
          240       250       260       270       280       290    

            220       230       240       250       260       270  
pF1KE0 VQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSLLVNTSAL
       :::: :.:: : .:: ::: :::: :::::.  :.:: .  : .::.:: .  ::::.::
CCDS12 VQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAAL
          300       310       320       330       340       350    

            280       290       300             
pF1KE0 MSVCFPTLSPFVLMSCDPSVYRFCFAWKR            
       . .::::.::::::  :::  :.:                 
CCDS12 IIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
          360       370       380       390     

>>CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19             (353 aa)
 initn: 800 init1: 468 opt: 815  Z-score: 1010.3  bits: 195.2 E(32554): 5.9e-50
Smith-Waterman score: 815; 43.1% identity (70.6% similar) in 299 aa overlap (1-298:41-338)

                                             10         20         
pF1KE0                               MASRYVAVGM-ILSQTVVGVLGSFSVLLHY
                                     ::   :  :. .: :: ::.::.  .:  :
CCDS12 PLMTRYFFLLFYSTDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFY
               20        30        40        50        60        70

      30        40        50        60        70        80         
pF1KE0 LSFYCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRV
         .  :: .:: ::::...: .:: ..:  ::.::::::::..:.::  :::.::: :::
CCDS12 NLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRV
               80        90       100       110       120       130

      90       100       110       120       130       140         
pF1KE0 GRGVSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYV
       :  ::..: :::. ::.: ..    :: ..: ..:. . :  ::::   .:.:    . :
CCDS12 GTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLV
              140       150       160       170       180       190

     150       160       170       180       190       200         
pF1KE0 TGKWNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCLGLMLWVSSSMVCILHRH
       .:  :  : ..... ::::  ...... .:.:.:   :: . ::.:.:.:.::: .:.::
CCDS12 NGPLNSKNSSAKNNYGYCSYKASKRFS-SLHAVLYFSPDFMSLGFMVWASGSMVFFLYRH
              200       210        220       230       240         

     210       220       230       240       250       260         
pF1KE0 KQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSLLVNT
       ::.:::   . :: : : : :::..:..:::.:   :..  .. .  ... ::.. .:..
CCDS12 KQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVANPGQWIVTN
     250       260       270       280       290       300         

     270       280       290       300             
pF1KE0 SALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR            
       :.:.. :::. :::::.  :  . .::::               
CCDS12 SVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP
     310       320       330       340       350   




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:33:43 2016 done: Sat Nov  5 03:33:44 2016
 Total Scan time:  2.380 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]