Result of FASTA (ccds) for pF1KE0793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0793, 312 aa
  1>>>pF1KE0793 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9069+/-0.00109; mu= -1.6904+/- 0.067
 mean_var=362.5212+/-72.847, 0's: 0 Z-trim(114.9): 44  B-trim: 993 in 1/51
 Lambda= 0.067361
 statistics sampled from 15422 (15465) to 15422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.475), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17      ( 312) 2161 223.1 2.2e-58
CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 370) 1641 172.7 3.9e-43
CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 397) 1084 118.6 8.2e-27
CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 425) 1084 118.6 8.5e-27
CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 392) 1074 117.6 1.6e-26
CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 395) 1074 117.6 1.6e-26
CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16       ( 418) 1074 117.6 1.7e-26
CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22       ( 451)  979 108.4   1e-23
CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22       ( 380)  970 107.5 1.7e-23
CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22       ( 367)  966 107.1 2.2e-23
CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22       ( 376)  965 107.0 2.4e-23
CCDS46699.1 RBFOX2 gene_id:23543|Hs108|chr22       ( 370)  962 106.7 2.9e-23


>>CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17           (312 aa)
 initn: 2161 init1: 2161 opt: 2161  Z-score: 1161.8  bits: 223.1 E(32554): 2.2e-58
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KE0 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EASTQPIAGTQTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTFRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHT
              250       260       270       280       290       300

              310  
pF1KE0 IGPAATYSIGTM
       ::::::::::::
CCDS45 IGPAATYSIGTM
              310  

>>CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16            (370 aa)
 initn: 1566 init1: 1334 opt: 1641  Z-score: 887.8  bits: 172.7 E(32554): 3.9e-43
Smith-Waterman score: 1641; 78.1% identity (90.5% similar) in 315 aa overlap (1-312:21-330)

                                   10        20        30        40
pF1KE0                     MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
                           :::::  ::. :: ::::::::. : :::. .:.::: ::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
               10        20        30         40        50         

               50        60        70        80         90         
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQP
        :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .::. :: :.::
CCDS55 -EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQP
       60        70        80        90         100       110      

      100       110       120       130       140       150        
pF1KE0 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKL
       ::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::
CCDS55 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
        120       130       140       150       160       170      

      160       170       180       190       200       210        
pF1KE0 NGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGT
       .::.::::::::::::::::::::: :::::::::::::::::.:::::: :::::.. .
CCDS55 HGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATA
        180       190       200       210       220       230      

      220       230       240       250       260       270        
pF1KE0 AVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-
       :.::::::::::::.:::::::: ::::::.::.::::::::::.:::::::::::::. 
CCDS55 AAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTP
        240       250       260       270       280       290      

       280       290       300       310                           
pF1KE0 AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM                         
       :.:::::::::::::: :::::...:: ::..:.:                         
CCDS55 ATAAAYSDSYGRVYAA-DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSL
        300       310        320       330       340       350     

CCDS55 QASIYRGGYNRFAPY
         360       370

>>CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16            (397 aa)
 initn: 1572 init1: 815 opt: 1084  Z-score: 594.9  bits: 118.6 E(32554): 8.2e-27
Smith-Waterman score: 1574; 71.9% identity (83.3% similar) in 342 aa overlap (1-312:21-357)

                                   10        20        30        40
pF1KE0                     MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
                           :::::  ::. :: ::::::::. : :::. .:.::: ::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP
               10        20        30         40        50         

               50        60        70        80         90         
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQP
        :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .::. :: :.::
CCDS55 -EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQP
       60        70        80        90         100       110      

      100       110       120       130       140       150        
pF1KE0 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKL
       ::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::
CCDS55 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
        120       130       140       150       160       170      

      160       170       180       190       200                  
pF1KE0 NGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------
       .::.::::::::::::::::::::: :::::::::::::::::.::::: :         
CCDS55 HGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQE
        180       190       200       210       220       230      

                       210       220       230       240       250 
pF1KE0 ------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYG
                         :::::.. .:.::::::::::::.:::::::: ::::::.::
CCDS55 GSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG
        240       250       260       270       280       290      

             260       270        280       290       300       310
pF1KE0 AVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIG
       .::::::::::.:::::::::::::. :.:::::::::::::: :::::...:: ::..:
CCDS55 GVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHHALAPAPTYGVG
        300       310       320       330        340       350     

                                                 
pF1KE0 TM                                        
       .:                                        
CCDS55 AMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
         360       370       380       390       

>>CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16            (425 aa)
 initn: 1572 init1: 815 opt: 1084  Z-score: 594.5  bits: 118.6 E(32554): 8.5e-27
Smith-Waterman score: 1574; 71.9% identity (83.3% similar) in 342 aa overlap (1-312:64-400)

                                             10        20        30
pF1KE0                               MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
                                     :::::  ::. :: ::::::::. : :::.
CCDS76 IEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
            40        50        60        70         80        90  

               40        50        60        70        80          
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
        .:.::: :: :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .:
CCDS76 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
            100        110       120       130         140         

      90        100       110       120       130       140        
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
       :. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS76 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
     150       160       170       180       190       200         

      150       160       170       180       190       200        
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
       .:::::::::.::.::::::::::::::::::::: :::::::::::::::::.::::: 
CCDS76 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
     210       220       230       240       250       260         

                                 210       220       230       240 
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
       :                           :::::.. .:.::::::::::::.::::::::
CCDS76 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
     270       280       290       300       310       320         

             250       260       270        280       290       300
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHHT
        ::::::.::.::::::::::.:::::::::::::. :.:::::::::::::: :::::.
CCDS76 APPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHHA
     330       340       350       360       370       380         

              310                           
pF1KE0 IGPAATYSIGTM                         
       ..:: ::..:.:                         
CCDS76 LAPAPTYGVGAMPQGSSPSTDFRGAKLHTSRPLLSGS
      390       400       410       420     

>>CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16            (392 aa)
 initn: 1531 init1: 815 opt: 1074  Z-score: 589.7  bits: 117.6 E(32554): 1.6e-26
Smith-Waterman score: 1518; 70.0% identity (81.9% similar) in 343 aa overlap (1-312:41-378)

                                             10        20        30
pF1KE0                               MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
                                     :::::  ::. :: ::::::::. : :::.
CCDS45 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
               20        30        40        50         60         

               40        50        60        70        80          
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
        .:.::: :: :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .:
CCDS45 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
      70         80        90       100       110         120      

      90        100       110       120       130       140        
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
       :. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS45 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
        130       140       150       160       170       180      

      150       160       170       180       190       200        
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
       .:::::::::.::.::::::::::::::::::::: :::::::::::::::::.::::: 
CCDS45 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
        190       200       210       220       230       240      

                                 210       220       230       240 
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
       :                           :::::.. .:.::::::::::::.::::::::
CCDS45 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
        250       260       270       280       290       300      

             250       260        270        280       290         
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
        ::::::.::.::::.  :: ..  :::::::::::. :.:::::::::::::: :::::
CCDS45 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHH
        310       320       330       340       350       360      

     300       310                
pF1KE0 TIGPAATYSIGTM              
       ...:: ::..:.:              
CCDS45 ALAPAPTYGVGAMASIYRGGYNRFAPY
         370       380       390  

>>CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16            (395 aa)
 initn: 1290 init1: 815 opt: 1074  Z-score: 589.7  bits: 117.6 E(32554): 1.6e-26
Smith-Waterman score: 1404; 69.0% identity (80.4% similar) in 326 aa overlap (1-295:41-362)

                                             10        20        30
pF1KE0                               MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
                                     :::::  ::. :: ::::::::. : :::.
CCDS10 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
               20        30        40        50         60         

               40        50        60        70        80          
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
        .:.::: :: :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .:
CCDS10 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
      70         80        90       100       110         120      

      90        100       110       120       130       140        
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
       :. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS10 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
        130       140       150       160       170       180      

      150       160       170       180       190       200        
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
       .:::::::::.::.::::::::::::::::::::: :::::::::::::::::.::::: 
CCDS10 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
        190       200       210       220       230       240      

                                 210       220       230       240 
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
       :                           :::::.. .:.::::::::::::.::::::::
CCDS10 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
        250       260       270       280       290       300      

             250       260        270        280       290         
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
        ::::::.::.::::.  :: ..  :::::::::::. :.::::::    :..:::    
CCDS10 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVAADEISC
        310       320       330       340       350       360      

     300       310                  
pF1KE0 TIGPAATYSIGTM                
                                    
CCDS10 NTSAVTDEFMLPTPTTTHLLQPPPTALVP
        370       380       390     

>>CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16            (418 aa)
 initn: 1531 init1: 815 opt: 1074  Z-score: 589.4  bits: 117.6 E(32554): 1.7e-26
Smith-Waterman score: 1518; 70.0% identity (81.9% similar) in 343 aa overlap (1-312:41-378)

                                             10        20        30
pF1KE0                               MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
                                     :::::  ::. :: ::::::::. : :::.
CCDS10 PYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPA
               20        30        40        50         60         

               40        50        60        70        80          
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP-LHP
        .:.::: :: :: ..:: ::::: ::  ...:.: ..:: :  :::.:: ::.::  .:
CCDS10 PEYTGQTTVP-EHTLNLYPPAQTHSEQSPADTSAQTVSGTAT--QTDDAAPTDGQPQTQP
      70         80        90       100       110         120      

      90        100       110       120       130       140        
pF1KE0 SDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETS
       :. :: :.::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS10 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS
        130       140       150       160       170       180      

      150       160       170       180       190       200        
pF1KE0 SDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAV
       .:::::::::.::.::::::::::::::::::::: :::::::::::::::::.::::: 
CCDS10 ADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAG
        190       200       210       220       230       240      

                                 210       220       230       240 
pF1KE0 T---------------------------GFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
       :                           :::::.. .:.::::::::::::.::::::::
CCDS10 TVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAA
        250       260       270       280       290       300      

             250       260        270        280       290         
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIY-GGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPYHH
        ::::::.::.::::.  :: ..  :::::::::::. :.:::::::::::::: :::::
CCDS10 APPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA-DPYHH
        310       320       330       340       350       360      

     300       310                                          
pF1KE0 TIGPAATYSIGTM                                        
       ...:: ::..:.:                                        
CCDS10 ALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
         370       380       390       400       410        

>>CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22            (451 aa)
 initn: 1050 init1: 699 opt: 979  Z-score: 539.1  bits: 108.4 E(32554): 1e-23
Smith-Waterman score: 1266; 62.7% identity (74.9% similar) in 346 aa overlap (1-298:91-424)

                                             10        20        30
pF1KE0                               MAQPYPPAQYPPPPQNGIPAEYAPPPPHPT
                                     :.::.    .:::::::::.::. :  : :
CCDS43 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVP--H-T
               70        80        90       100       110          

               40        50        60        70        80          
pF1KE0 QDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LH
       :::.:::    ::..:::  .:.: :: ..  :::   :. :  ::. .::::.:    .
CCDS43 QDYAGQTG---EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT--QTEGGAQTDGQQSQTQ
       120          130       140         150         160       170

       90        100       110       120       130       140       
pF1KE0 PSDPTE-KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFET
        :. .: :. :::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS43 SSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN
              180       190       200       210       220       230

       150       160       170       180       190       200       
pF1KE0 SSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA
       :.:::::::::.::.::::::::::::::::::::  .::.:::::.::::::::::.::
CCDS43 SADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYA
              240       250       260       270       280       290

                                          210        220       230 
pF1KE0 -----------------------------------VTGFPYPTTGT-AVAYRGAHLRGRG
                                          : ::::::..: :.:.:::::::::
CCDS43 ASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRG
              300       310       320       330       340       350

             240       250       260       270                280  
pF1KE0 RAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA---------AAAAA
       :.::.. ::.::   ::.: .::::::::::..:::::::::::::         :::::
CCDS43 RTVYGAVRAVPPTA-IPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAA
              360        370       380       390       400         

            290       300       310               
pF1KE0 YSDSYGRVYAAADPYHHTIGPAATYSIGTM             
       :::.:::::.: ::::                           
CCDS43 YSDGYGRVYTA-DPYHALAPAASYGVGAVASLYRGGYSRFAPY
     410       420        430       440       450 

>>CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22            (380 aa)
 initn: 1068 init1: 699 opt: 970  Z-score: 535.2  bits: 107.5 E(32554): 1.7e-23
Smith-Waterman score: 1257; 62.4% identity (74.6% similar) in 346 aa overlap (1-298:21-353)

                                   10        20        30        40
pF1KE0                     MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
                           :.::.    .:::::::::.::. :  : ::::.:::   
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVP--H-TQDYAGQT---
               10        20        30        40           50       

               50        60        70        80          90        
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LHPSDPTE-KQQ
        ::..:::  .:.: :: ..  :::   :. :   :. .::::.:    . :. .: :. 
CCDS46 GEHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT---TEGGAQTDGQQSQTQSSENSESKST
           60        70          80           90       100         

       100       110       120       130       140       150       
pF1KE0 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREK
       :::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::
CCDS46 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK
     110       120       130       140       150       160         

       160       170       180       190       200                 
pF1KE0 LNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA----------
       :.::.::::::::::::::::::::  .::.:::::.::::::::::.::          
CCDS46 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL
     170       180       190       200       210       220         

                                210        220       230       240 
pF1KE0 -------------------------VTGFPYPTTGT-AVAYRGAHLRGRGRAVYNTFRAA
                                : ::::::..: :.:.::::::::::.::.. ::.
CCDS46 GNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV
     230       240       250       260       270       280         

             250       260       270                280       290  
pF1KE0 PPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA---------AAAAAYSDSYGRVYA
       ::   ::.: .::::::::::..:::::::::::::         ::::::::.:::::.
CCDS46 PPTA-IPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYT
     290        300       310       320       330       340        

            300       310               
pF1KE0 AADPYHHTIGPAATYSIGTM             
       : ::::                           
CCDS46 A-DPYHALAPAASYGVGAVASLYRGGYSRFAPY
       350       360       370       380

>>CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22            (367 aa)
 initn: 820 init1: 699 opt: 966  Z-score: 533.3  bits: 107.1 E(32554): 2.2e-23
Smith-Waterman score: 1032; 60.8% identity (74.6% similar) in 291 aa overlap (1-256:21-300)

                                   10        20        30        40
pF1KE0                     MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVP
                           :.::.    .:::::::::.::.   :: ::::.:::   
CCDS13 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGV--PH-TQDYAGQT---
               10        20        30        40           50       

               50        60        70        80          90        
pF1KE0 TEHGMTLYTPAQTHPEQPGSEASTQPIAGTQTVPQTDEAAQTDSQP--LHPSDPTE-KQQ
        ::..:::  .:.: :: ..  :::   :. :  ::. .::::.:    . :. .: :. 
CCDS13 GEHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT--QTEGGAQTDGQQSQTQSSENSESKST
           60        70          80          90       100       110

       100       110       120       130       140       150       
pF1KE0 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREK
       :::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::
CCDS13 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK
              120       130       140       150       160       170

       160       170       180       190       200                 
pF1KE0 LNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYA----------
       :.::.::::::::::::::::::::  .::.:::::.::::::::::.::          
CCDS13 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL
              180       190       200       210       220       230

                            210        220       230       240     
pF1KE0 ---------------------VTGFPYPTTGT-AVAYRGAHLRGRGRAVYNTFRAAPPPP
                            . ::::::..: :.:.::::::::::.::.. ::.::  
CCDS13 GNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTA
              240       250       260       270       280       290

         250       260       270       280       290       300     
pF1KE0 PIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAAAAYSDSYGRVYAAADPYHHTIGPAA
        ::.: .: .:                                                 
CCDS13 -IPAYPGVDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTPTMPLPLPLAMELAL
               300       310       320       330       340         




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:11:20 2016 done: Sat Nov  5 03:11:21 2016
 Total Scan time:  2.710 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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