Result of FASTA (ccds) for pF1KE0757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0757, 330 aa
  1>>>pF1KE0757 330 - 330 aa - 330 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2079+/-0.000829; mu= 0.0796+/- 0.050
 mean_var=254.5739+/-52.260, 0's: 0 Z-trim(116.5): 46  B-trim: 145 in 1/51
 Lambda= 0.080384
 statistics sampled from 17077 (17122) to 17077 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.526), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5          ( 330) 2312 280.4 1.4e-75
CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5         ( 246) 1570 194.3 8.8e-50
CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10         ( 329)  906 117.4 1.7e-26
CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4        ( 197)  545 75.3 4.5e-14
CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4        ( 276)  545 75.4 5.8e-14
CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4        ( 316)  536 74.4 1.3e-13
CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4         ( 364)  536 74.5 1.5e-13


>>CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5               (330 aa)
 initn: 2312 init1: 2312 opt: 2312  Z-score: 1470.5  bits: 280.4 E(32554): 1.4e-75
Smith-Waterman score: 2312; 99.7% identity (99.7% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
              250       260       270       280       290       300

              310       320       330
pF1KE0 YCESHAKARVKPPEGYDVVAVYPNAKVELV
       ::::::::::::::::::::::::::::::
CCDS41 YCESHAKARVKPPEGYDVVAVYPNAKVELV
              310       320       330

>>CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5              (246 aa)
 initn: 1570 init1: 1570 opt: 1570  Z-score: 1007.2  bits: 194.3 E(32554): 8.8e-50
Smith-Waterman score: 1570; 95.0% identity (96.2% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTAS
       ::::::::::::::::::::::::::::::::::::::::::::   .  :  .  :.::
CCDS47 DCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTSSTIPSAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERL
                                                                   
CCDS47 CAVTAA                                                      
                                                                   

>>CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10              (329 aa)
 initn: 924 init1: 474 opt: 906  Z-score: 589.3  bits: 117.4 E(32554): 1.7e-26
Smith-Waterman score: 906; 44.6% identity (67.5% similar) in 332 aa overlap (3-323:4-328)

                10        20        30        40        50         
pF1KE0  MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTEL
          ... :.::.:::::::::.::  ::.::::  ::::::: :: ::.: ::.::.:  
CCDS74 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSN
               10        20        30        40        50        60

      60        70        80         90       100       110        
pF1KE0 MTHLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQD----GSP-
       ::::::::::::: :.:::.:.: : . : : . ...: . .....  : :.    ::  
CCDS74 MTHLEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH
               70        80        90       100       110       120

           120       130       140       150            160        
pF1KE0 TTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSS-----EATLPAQMSTLHVSPPP
       . :  :  .. .       . . :..:  .   .: :.     :.   :.    .  :  
CCDS74 NRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLD
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KE0 SADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPG
        :.:  .:       .:  ::::.::.:  : .   :::: ::  :: .::. : ::   
CCDS74 HAQPPSSL------VIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNK
                    190       200        210       220       230   

      230       240       250       260       270       280        
pF1KE0 PGGPRNLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNL
       :.: :..:  ..:..: ... : :: : .:  ::::..:: ::.  ::::..:.::: ::
CCDS74 PSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNL
           240       250       260       270       280       290   

      290       300       310       320       330
pF1KE0 KQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
       ::.:.::.....:::.::. :: :::::.::.:.:       
CCDS74 KQKGHFFVEDQIYCEKHARERVTPPEGYEVVTVFPK      
           300       310       320               

>>CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4             (197 aa)
 initn: 606 init1: 363 opt: 545  Z-score: 366.0  bits: 75.3 E(32554): 4.5e-14
Smith-Waterman score: 550; 43.6% identity (67.6% similar) in 204 aa overlap (123-325:9-197)

            100       110       120       130       140       150  
pF1KE0 DDSKAQAHRIHIDPEIQDGSPTTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSE
                                     : .:   : : :  ..::  . . ..:.  
CCDS75                       MPQTVILPGPAPWGFRLSGGIDFNQP--LVITRDGNYF
                                     10        20          30      

            160       170       180       190        200       210 
pF1KE0 ATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSF
                  : :  :..:. ..:   :        :::::..   ::.  .:.:::::
CCDS75 EHKHNIRPKPFVIPGRSSEPTASVPPESD--------VYRMLHDNRNEPT--QPRQSGSF
         40        50        60                70          80      

             220       230       240       250       260       270 
pF1KE0 RYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARD
       : ::::..  .:.:   :.: :...  ..:. .  .: : .: : .:  ::::..:::::
CCDS75 RVLQGMVD--DGSD-DRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARD
         90          100       110       120       130       140   

             280       290       300       310       320       330
pF1KE0 KLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
       :  :::::.:.::.:::::.::::.. .::::.::.::.:::::::.:..::.:     
CCDS75 KYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTLYPKA     
           150       160       170       180       190            

>>CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4             (276 aa)
 initn: 827 init1: 363 opt: 545  Z-score: 364.1  bits: 75.4 E(32554): 5.8e-14
Smith-Waterman score: 869; 45.0% identity (66.7% similar) in 327 aa overlap (1-325:1-276)

               10        20        30        40        50        60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
       ::..: : ::.:::::: :: ::. ::.:.:.  ::::: : :::::.: ::.: .:: :
CCDS75 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTSRRP
       :: .::.:::.   .: :...: : . : :.. .:.::.  .:... : :::.    .. 
CCDS75 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKH-
               70        80        90       100       110          

     120       130       140       150       160       170         
pF1KE0 SGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRS
               . ::.   :.  : :       ::: :         .: :: .:        
CCDS75 --------NIRPK---PFVIPGR-------SSEPT---------ASVPPESD--------
             120          130                       140            

     180       190        200       210       220       230        
pF1KE0 RDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPT
                 :::::..   ::.  .:.:::::: ::::..  .:.:   :.: :...  
CCDS75 ----------VYRMLHDNRNEPT--QPRQSGSFRVLQGMVD--DGSD-DRPAGTRSVRAP
                    150         160       170          180         

      240       250       260       270       280       290        
pF1KE0 ASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDE
       ..:. .  .: : .: : .:  ::::..::::::  :::::.:.::.:::::.::::.. 
CCDS75 VTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEG
     190       200       210       220       230       240         

      300       310       320       330
pF1KE0 RLYCESHAKARVKPPEGYDVVAVYPNAKVELV
       .::::.::.::.:::::::.:..::.:     
CCDS75 ELYCETHARARTKPPEGYDTVTLYPKA     
     250       260       270           

>>CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4             (316 aa)
 initn: 796 init1: 363 opt: 536  Z-score: 357.7  bits: 74.4 E(32554): 1.3e-13
Smith-Waterman score: 923; 44.3% identity (71.7% similar) in 332 aa overlap (1-325:1-316)

               10        20        30        40        50        60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
       ::..: : ::.:::::: :: ::. ::.:.:.  ::::: : :::::.: ::.: .:: :
CCDS47 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTS---
       :: .::.:::.   .: :...: : . : :.. .:.::.  .:... : :. .:  .   
CCDS47 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE0 RR--PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR
       ::  :  .... .: :  ... :..:  . .  ... . .: .:.  : .   :. .:. 
CCDS47 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGL-IPSSPQNEPTA
              130       140         150       160        170       

          180       190        200       210       220       230   
pF1KE0 GLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPR
       ..:   :        :::::..   ::  ..:.:::::: ::::..  .:.:   :.: :
CCDS47 SVPPESD--------VYRMLHDNRNEP--TQPRQSGSFRVLQGMVD--DGSD-DRPAGTR
       180               190         200       210          220    

           240       250       260       270       280       290   
pF1KE0 NLKPTASKLGAPLSGLQGLPECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGY
       ...  ..:. .  .: : .: : .:  ::::..::::::  :::::.:.::.:::::.::
CCDS47 SVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY
          230       240       250       260       270       280    

           300       310       320       330
pF1KE0 FFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
       ::.. .::::.::.::.:::::::.:..::.:     
CCDS47 FFIEGELYCETHARARTKPPEGYDTVTLYPKA     
          290       300       310           

>>CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4              (364 aa)
 initn: 849 init1: 363 opt: 536  Z-score: 356.9  bits: 74.5 E(32554): 1.5e-13
Smith-Waterman score: 842; 42.3% identity (62.9% similar) in 364 aa overlap (9-325:9-364)

               10        20        30        40        50        60
pF1KE0 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
               ::.:::::: :: ::. ::.:.:.  ::::: : :::::.: ::.: .:: :
CCDS38 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KE0 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGS-------
       :: .::.:::.   .: :...: : . : :.. .:.::.  .:... : :::.       
CCDS38 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN
               70        80        90       100       110       120

                       120       130         140                   
pF1KE0 --------PTTSR---RPSGTGTGPEDGRPSLGSPYGQ--P----------PRFPVPHN-
               :  :     :::   :   . ::  :  .   :          : .:.  . 
CCDS38 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL
              130       140       150       160       170       180

           150              160         170       180       190    
pF1KE0 -G----SSEATLPAQ-------MSTLH--VSPPPSADPARGLPRSRDCRVDLGSEVYRML
        :     .. . : :       : ::.  ::   .  :  . : .    :   :.:::::
CCDS38 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTAS---VPPESDVYRML
              190       200       210       220          230       

           200       210       220       230       240       250   
pF1KE0 REP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLP
       ..   ::  ..:.:::::: ::::..  .:.:   :.: :...  ..:. .  .: : .:
CCDS38 HDNRNEP--TQPRQSGSFRVLQGMVD--DGSD-DRPAGTRSVRAPVTKVHGGSGGAQRMP
       240         250       260          270       280       290  

           260       270       280       290       300       310   
pF1KE0 ECTRCCHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP
        : .:  ::::..::::::  :::::.:.::.:::::.::::.. .::::.::.::.:::
CCDS38 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPP
            300       310       320       330       340       350  

           320       330
pF1KE0 EGYDVVAVYPNAKVELV
       ::::.:..::.:     
CCDS38 EGYDTVTLYPKA     
            360         




330 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:04:17 2016 done: Sat Nov  5 03:04:18 2016
 Total Scan time:  3.260 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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