GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:51:10

Sequence gi568815597f:28453640_28677633 : 223994 bp : 47.28% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5478   5619  142  2  1   78  100    70 0.701   7.50
 1.02 Intr +  12046  12210  165  2  0  122   82    77 0.998  10.43
 1.03 Intr +  12743  13129  387  0  0   78  111   120 0.641   8.06
 1.04 Intr +  19915  20512  598  2  1  101   84   221 0.724  14.60
 1.05 Intr +  22468  22652  185  1  2  -12   52   264 0.870  12.23
 1.06 Intr +  26812  26965  154  2  1   50   82    96 0.248   4.33
 1.07 Intr +  38049  38148  100  0  1   58   77    99 0.790   5.91
 1.08 Intr +  42681  42768   88  2  1   70   77    14 0.379  -1.96
 1.09 Term +  42895  42923   29  2  2   98   54    64 0.525   2.24
 1.10 PlyA +  44022  44027    6                               1.05

 2.00 Prom +  50803  50842   40                              -3.96
 2.01 Init +  64517  64669  153  1  0   64  100    74 0.130   4.21
 2.02 Intr +  76219  76300   82  0  1   50  110    96 0.240   7.21
 2.03 Intr +  78164  78351  188  0  2   76   96   103 0.981   9.31
 2.04 Intr +  78532  78711  180  0  0   31   90   232 0.999  17.76
 2.05 Intr +  81411  81507   97  2  1  135   94   131 0.999  17.98
 2.06 Intr +  81619  81741  123  2  0  102  123   137 0.999  19.16
 2.07 Intr +  82232  82387  156  0  0  129   85   194 0.999  23.18
 2.08 Intr +  82623  82742  120  1  0  104   97    56 0.996   8.57
 2.09 Intr +  83108  83260  153  0  0  132  101   110 0.999  16.74
 2.10 Term +  84193  84368  176  2  2  125   45   188 0.999  16.12
 2.11 PlyA +  84563  84568    6                               1.05

 3.00 Prom +  99163  99202   40                              -3.76
 3.01 Init +  99472  99498   27  0  0   76   86    40 0.576   0.97
 3.02 Intr + 100001 100098   98  1  2  101  106   173 0.979  19.21
 3.03 Intr + 106994 107093  100  2  1  102   67    27 0.991   2.11
 3.04 Intr + 107707 107759   53  0  2   91   96    67 0.993   5.51
 3.05 Intr + 111064 111195  132  1  0  119   69   153 0.999  16.26
 3.06 Intr + 113655 113774  120  0  0   70   75   120 0.994   8.51
 3.07 Intr + 117537 117699  163  0  1   79   91   241 0.999  23.48
 3.08 Intr + 118228 118261   34  0  1   99  116    59 0.999   7.60
 3.09 Term + 123861 123997  137  1  2  128   42   196 0.999  17.18
 3.10 PlyA + 124782 124787    6                              -0.45

 4.05 PlyA - 124908 124903    6                               1.05
 4.04 Term - 125041 124992   50  2  2   91   43    12 0.674  -5.53
 4.03 Intr - 125948 125894   55  2  1  106  106    52 0.851   7.35
 4.02 Intr - 126342 126273   70  2  1  107   98    29 0.823   4.98
 4.01 Init - 127513 127455   59  1  2   58   94    37 0.563   2.08
 4.00 Prom - 127593 127554   40                              -7.26

 5.00 Prom + 132101 132140   40                              -0.36
 5.01 Init + 138873 139105  233  2  2  111   80   400 0.985  39.23
 5.02 Term + 140055 140478  424  0  1  134   41   508 0.954  45.47
 5.03 PlyA + 141785 141790    6                               1.05

 6.07 PlyA - 142528 142523    6                               1.05
 6.06 Term - 149935 149900   36  1  0  120   41    39 0.652  -0.26
 6.05 Intr - 151821 151733   89  1  2  104   94    71 0.909   8.99
 6.04 Intr - 159722 159608  115  2  1  111   77   163 0.994  17.52
 6.03 Intr - 164391 164314   78  0  0   48   94   123 0.994   8.65
 6.02 Intr - 168526 168332  195  1  0   82   48   183 0.663  13.31
 6.01 Init - 170378 170307   72  2  0   66   87    42 0.683   2.97
 6.00 Prom - 171578 171539   40                              -2.56

 7.06 PlyA - 175138 175133    6                               1.05
 7.05 Term - 189331 189114  218  2  2   43   55   157 0.195   5.21
 7.04 Intr - 200972 200363  610  2  1   97   55   130 0.002   2.59
 7.03 Intr - 202575 202400  176  1  2    4   55   115 0.235  -0.54
 7.02 Intr - 203115 202981  135  1  0   61   36    90 0.070   1.64
 7.01 Intr - 215718 215342  377  2  2   76   -9   176 0.016   1.36

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 201217 201056  162  1  0   72   52   146 0.911   7.34
S.002 Init - 203230 202981  250  1  1   45   36   143 0.821   2.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_1|615_aa
MVLDSVEAGDTTPPTKRKSKFSGFGKIFKPWKWRKKKSSDKFKETSEGGEDPGKPSDAML
KNGHTTPIGNARSSSPVQVEEEPVRLASLRKAIPEEDLKKRLGSTGSQPNSEAESVPENV
PKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAATTAATSLAKTVNL
SVTPSPAPRTLPAAPASTNTTATPSLTHMVPAKQPPIPPPKPAHRNSNPVIAELSQAINS
GTLLSKPSPPLPPKRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSP
SPPLPTHIPPEPPRTPPFPAKTFQVVPEIEFPPSLDLHQEIPQQEDQKKEVPKRILDQNF
GEPHIPSRLPPLPLHIRIQQALTSPLPMTPILEGSHRAHSLLFENSDSFSEDSSTLGRTR
SLPITIEMLKVPDDEEEEEQTCPSTFSEEMTPTSVIPKLPQCLREEEEKESDSDSEGPIQ
YRDEEDEDESYQSALANKVKRKDTLAMKLNHRPSEPELNLNSWPCKSKEEWNEIRHQIGN
TLIRKILRFNEYVEVTDAQDYDRRADKPWTKLTPADKCWDYRCEPLRPAEKSFKKEADEE
YQMQQKATIVHDAKG

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_1|1848_bp
atggtcctggacagtgtggaagcaggagacacaacacctcctaccaaaaggaagagcaag
ttctcaggctttggcaagatcttcaagccctggaaatggaggaaaaaaaaaagtagtgat
aaatttaaagagacttcagaaggtggtgaggatccaggaaagccaagcgatgccatgtta
aagaatggccataccacccccatagggaatgccagatcatctagtccagtccaagtagag
gaagagccagtaagattagcaagtcttaggaaagctattccagaagaggacctaaagaaa
cgactaggctcaactggaagccagcctaattctgaagcagagtctgttcctgagaatgta
cccaaaccacctttacttcctcccaaaagacccttgtcctcttctcatgaagcaagtgaa
gggcaagcaaaggatgccacttcctctggcggcacggcaaggttcatcatctccacctcc
atcaccacagcacccgctgccaccactgctgccacaagccttgcaaagactgttaatctc
tctgtcaccccttccccagcacccaggactctgcctgctgctcctgccagcactaacact
actgctaccccaagcctcactcatatggtccctgccaagcagccccctatccctccccct
aaaccagctcacagaaatagcaaccctgtcattgctgaactgtcccaagcaataaacagt
ggtacattgttatcaaaaccgtccccacccttaccacctaagagaggcattccatcaacc
tcagtacccaccttggagtctgctgctgccatcaccacaaaaacaccaagtgatgaaaga
gagaagagcacgtgttctatgggctcggaactactaccaatgatctcacctcgctctccg
tcccccccactgcctactcatatacctccagagcctccacgcacccctccattccctgct
aagacttttcaagttgtgccagaaattgagtttccaccatccttagatctacaccaggag
attccccagcaggaagatcagaaaaaggaagtccccaagaggatactggaccagaacttt
ggggagccccatataccctctaggctgcctccactcccactgcatattcgaatccagcag
gccctcaccagcccacttcccatgactcctattctggagggttctcacagagctcattcg
ttgctttttgaaaacagtgacagcttttctgaggacagcagtacgctgggtcggaccagg
tctcttcccatcactattgaaatgctaaaagttccagacgatgaagaagaagaggagcaa
acctgtccatccacattcagtgaagaaatgacacctacctcagtcattcctaaattacca
cagtgtctacgggaggaagaagagaaggagagcgactctgattcagaaggtcccattcag
taccgagatgaagaagatgaagatgaaagctatcagagtgctctcgccaacaaagtgaag
aggaaagacacactggcaatgaagttgaaccacagacccagtgaaccagagttgaacctg
aattcttggccttgtaaaagcaaggaggagtggaatgaaatacggcaccagattggaaac
acactgatccggaagattctgaggtttaatgaatatgtagaggtaacagatgctcaagat
tatgaccggcgagccgacaaaccttggaccaaactgacccctgctgacaagtgctgggat
tacaggtgtgaaccattgcgcccagccgagaagagttttaagaaggaagcagatgaggag
tatcagatgcaacagaaagctaccatcgtccatgatgccaaaggttga

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_2|475_aa
MQILGWPPGAAGLFVFLSHPGRGQRPAERMLWGSSRPGGERRSSLWPTCTKDRKMSPKRI
AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP
EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA
GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVM
LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF
CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT
VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRV
FAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_2|1428_bp
atgcagatcctgggatggccgccaggggccgccgggctctttgttttcctttctcacccg
ggtcggggccagaggcctgcagagcgcatgctctggggcagttcgcggcccggcggggag
cgccggagttccttgtggccgacgtgcaccaaggacaggaagatgtcacccaagcgcata
gctaaaagaaggtcccccccagcagatgccatccccaaaagcaagaaggtgaaggtctca
cacaggtcccacagcacagaacccggcttggtgctgacactaggccagggcgacgtgggc
cagctggggctgggtgagaatgtgatggagaggaagaagccggccctggtatccattccg
gaggatgttgtgcaggctgaggctgggggcatgcacaccgtgtgtctaagcaaaagtggc
caggtctattccttcggctgcaatgatgagggtgccctgggaagggacacatcagtggag
ggctcggagatggtccctgggaaagtggagctgcaagagaaggtggtacaggtgtcagca
ggagacagtcacacagcagccctcaccgatgatggccgtgtcttcctctggggctccttc
cgggacaataacggtgtgattggactgttggagcccatgaagaagagcatggtgcctgtg
caggtgcagctggatgtgcctgtggtaaaggtggcctcaggaaacgaccacttggtgatg
ctgacagctgatggtgacctctacaccttgggctgcggggaacagggccagctaggccgt
gtgcctgagttatttgccaaccgtggtggccggcaaggcctcgaacgactcctggtcccc
aagtgtgtgatgctgaaatccaggggaagccggggccacgtgagattccaggatgccttt
tgtggtgcctatttcacctttgccatctcccatgagggccacgtgtacggcttcggcctc
tccaactaccatcagcttggaactccgggcacagaatcttgcttcataccccagaaccta
acatccttcaagaattccaccaagtcctgggtgggcttctctggtggccagcaccataca
gtctgcatggattcggaaggaaaagcatacagcctgggccgggctgagtatgggcggctg
ggccttggagagggtgctgaggagaagagcatacccaccctcatctccaggctgcctgct
gtctcctcggtggcttgtggggcctctgtggggtatgctgtgaccaaggatggtcgtgtt
ttcgcctggggcatgggcaccaactaccagctgggcacagggcaggatgaggacgcctgg
agccctgtggagatgatgggcaaacagctggagaaccgtgtggtcttatctgtgtccagc
gggggccagcatacagtcttattagtcaaggacaaagaacagagctga

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_3|287_aa
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_3|864_bp
atggcggccagcctgtggatgggcgacctggaaccctacatggatgagaacttcatctcc
agagcctttgccaccatgggggagaccgtaatgagcgtcaaaattatccgaaaccgcctc
actgggatcccagctggctactgctttgtagaatttgcagatttggccacagctgagaag
tgtttgcataaaattaatgggaaaccccttccaggagccacacctgcgaaacgttttaaa
ctgaactatgccacttacgggaaacaaccagataacagccctgagtattccctctttgtg
ggggacctgaccccggacgtggatgatggcatgctgtatgaattcttcgtcaaagtctac
ccctcctgtcggggaggcaaggtggttttggaccagacaggcgtgtctaagggttatggt
tttgtgaaattcacagatgaactggaacagaagcgagccctgacggagtgccagggagca
gtgggactggggtctaagcctgtgcggctgagcgtggcaatccctaaagcgagccgtgta
aagccagtggaatatagtcagatgtacagttatagctacaaccagtattatcagcagtac
cagaactactatgctcagtggggctatgaccagaacacaggcagctacagctacagttac
ccccagtatggctatacccagagcaccatgcagacatatgaagaagttggagatgatgca
ttggaagaccccatgccacagctggatgtgactgaggccaacaaggagttcatggaacag
agtgaggagctgtatgacgctctgatggactgtcactggcagcccctggacacagtgtct
tcagagatccctgccatgatgtag

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_4|77_aa
MTDLVYRDPGVLKQVVMMDRLPPSFLAVCDTEEVSLFLELCFKIHVTCKAVLICDYGPME
LGQSLWEAEGKDPGHFR

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_4|234_bp
atgactgacttagtctacagagatcccggcgtacttaagcaggtagtaatgatggacagg
ttgcccccaagtttcctggcagtgtgtgatactgaggaggtgagcttgtttctggagctg
tgctttaagattcatgttacatgtaaagctgtcctcatttgtgactatggacctatggag
ttgggacaatctctatgggaagcagaaggcaaggaccccggtcattttaggtag

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_5|218_aa
MEAEGCRYQFRVALLGDAAVGKTSLLRSYVAGAPGAPEPEPEPEPTVGAECYRRALQLRA
GPRVKLQLWDTAGHERFRCITRSFYRNVVGVLLVFDVTNRKSFEHIQDWHQEVMATQGPD
KVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQA
LQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_5|657_bp
atggaggccgagggctgccgctaccaatttcgggtcgcgctgctgggggacgcggcggtg
ggcaagacgtcgctgctgcggagctacgtggcaggcgcgcctggcgccccggagccggag
cccgagcccgagcccacggtgggcgccgagtgctaccgccgcgcgctgcagctgcgggcc
gggccgcgggtcaagctgcaactctgggacaccgcgggccacgagcgcttcaggtgcatc
accaggtccttttaccggaatgtggtgggtgtcctgctggtctttgatgtgacaaacagg
aagtcctttgaacacatccaagactggcaccaggaggtcatggccactcagggcccggac
aaggtcatcttcctgctggttggccacaagagtgacctgcagagcacccgctgtgtctca
gcccaggaggccgaggagctagctgcctccctgggcatggccttcgtggagacctcggtt
aaaaacaactgcaatgtggacctggcctttgacaccctcgctgatgctatccagcaggcc
ctgcagcagggggacatcaagctagaagagggctgggggggtgtccggctcatccacaag
acccaaatccccaggtcccccagcaggaagcagcactcaggcccatgccagtgttga

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_6|194_aa
MAASHFTGLTAVADVIKDLDTQIALIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSA
LINLSNFSSIKPEPASTPPQGSMANSTAVVLTKKKLQDLVREVDPNEQLDEDVEEMLLQI
ADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEA
HKQRMALIRKTTKK

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_6|585_bp
atggctgcctctcatttcaccgggctcacagctgttgctgatgtaattaaagatctagac
actcagatagctttaattggccttggtcctcacagctccaaaaagaaacaggatctcgat
aagctctatgagctgaagtccaaagctcggcagattatgaaccagtttggcccctcagcc
ctaatcaacctctccaatttctcatccataaaaccggaaccagccagcacccctccacaa
ggctccatggccaatagtactgcagtggtattgaccaagaagaaattacaggacttagta
agagaagtggatcctaatgagcagttggatgaagatgtggaggagatgctgctgcagatt
gctgatgattttatcgagagtgtggtgacagcagcctgtcagcttgcgcggcatcgcaag
tctagcaccctggaggtgaaagatgtccagctgcatttagagcgccagtggaacatgtgg
atcccaggatttggctctgaagaaatccgaccctacaaaaaagcttgcaccacagaagct
cacaaacagagaatggcattgatccggaaaacaaccaagaaataa

>gi568815597f:28453640_28677633|GENSCAN_predicted_peptide_7|505_aa
XTQASNQLLIQGPGAPRTPPLGIPQAPRTPRWGPGRLALSVRSHSGPSWPLSRVLPGPSV
RGRRGPPSGGLAGSRRPGLGPEPRRRGRLRWGRPGGSGGPSGSVPPPPRGAATSARSPAA
AAARTGPTDLANAFFSIPVHKAHERQFAFSLQGRQYTFTILPQGYINSHKAVTRKTASFE
WSPKQDKALQQVQAVVQAALPFGPYDPADPMVLEVSVADRVAVWCLWQAPKGQRFILAGI
DTYSKYGFAYLACNASAKTIIRGLTECLIHHHGIPHSTASDHGTDFTAKQVQQWALAHGI
HLSYHVPHYPEAAGLIEQRNGLLKSQLQRQLGDNSLQGWGKVLQKAVYALNQHPIYGTVS
PITRIQGSRNQEVEMEVAPLTITLSDPLANFLLPVPMALCSADLEVLVLEGGMLPPGGTR
IPLNWKLRLPPRPVEEQEREEGVRTQTYSGSVFEGPGCGRDGAVRIQALGKGLTERIRLG
EDAAVGTRALRRDLGNGDGCEFSGI

>gi568815597f:28453640_28677633|GENSCAN_predicted_CDS_7|1518_bp
nngacccaggcctccaaccagctcctcatccaagggcccggtgctccccggaccccgcct
ttggggataccccaggctccccggacccctcgatggggtcctgggcgcctggccctctca
gtccggagtcactccggcccctcctggcccctgagccgagtacttccgggcccctcggtc
cgggggcgccggggcccccccagtggtggactcgccggttcccgccgccctggtctgggg
cccgagccccggcggcgcggccggctgcgctgggggcggcccggcggctcgggcggaccc
agcggcagcgtccccccacccccccgcggcgccgcgacgtccgctcgctccccggcggcg
gcggcggcacgcacagggcctactgatttggcaaatgcctttttctccattcctgtccac
aaggcccacgagaggcaattcgccttcagcttgcaaggccggcaatatactttcactatc
ttacctcaggggtatatcaactctcacaaagctgtgacccgaaagactgccagttttgag
tggagtccaaaacaggacaaggctctgcaacaggtccaggctgttgtgcaagctgctctg
ccatttggaccatatgacccagcagatccaatggtgcttgaggtgtcagtggcagatagg
gttgctgtttggtgcctttggcaggcccccaaagggcagaggtttatcctcgctggaata
gacacttactctaaatatgggtttgcctatcttgcatgcaatgcttctgccaagactatc
atccgtggacttacagaatgccttatccaccatcacggtattccacacagcactgcctct
gaccacggcactgactttacagctaaacaagtgcaacagtgggctcttgctcatggaatt
cacttgtcttaccatgttccccattatcctgaagcagctggattgatagaacagcggaat
ggccttttgaagtcacaattacaacgccaactaggtgacaattctttgcagggctgggga
aaagttctccagaaggctgtgtatgctctgaatcagcatccaatatatggtactgtttct
cccataaccaggattcaagggtccaggaatcaagaggtggaaatggaagtggctccactc
accatcacccttagtgatccactggcaaacttcttgcttcctgttcccatggcattatgt
tctgctgacctagaggtcttagttctagagggaggaatgctgccaccaggaggcacaagg
attccattaaactggaagttaagattgcctcctaggccagttgaggaacaagagcgggag
gagggagtcaggacccagacctacagtgggtcagtgttcgaaggaccaggttgtggacga
gacggggctgtgaggattcaggctcttgggaagggactgactgagaggatcaggctcgga
gaagacgcggctgtggggacccgggctctaagacgggacttagggaacggggacggatgc
gagttctccggcatctga