FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0641, 217 aa
  1>>>pF1KE0641 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6278+/-0.000766; mu= 5.5577+/- 0.047
 mean_var=188.7508+/-39.805, 0's: 0 Z-trim(114.4): 98  B-trim: 870 in 1/53
 Lambda= 0.093353
 statistics sampled from 14830 (14944) to 14830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.459), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS8740.1 ZCRB1 gene_id:85437|Hs108|chr12         ( 217) 1422 202.7 1.4e-52


>>CCDS8740.1 ZCRB1 gene_id:85437|Hs108|chr12              (217 aa)
 initn: 1422 init1: 1422 opt: 1422  Z-score: 1057.2  bits: 202.7 E(32554): 1.4e-52
Smith-Waterman score: 1422; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE
              130       140       150       160       170       180

              190       200       210       
pF1KE0 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
       :::::::::::::::::::::::::::::::::::::
CCDS87 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD
              190       200       210       




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:14:23 2016 done: Wed Nov  2 19:14:23 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]