Result of FASTA (omim) for pF1KE0620
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0620, 360 aa
  1>>>pF1KE0620 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0152+/-0.000473; mu= 26.9079+/- 0.030
 mean_var=202.8459+/-46.819, 0's: 0 Z-trim(114.1): 421  B-trim: 0 in 0/50
 Lambda= 0.090052
 statistics sampled from 23198 (23727) to 23198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.278), width:  16
 Scan time:  6.330

The best scores are:                                      opt bits E(85289)
NP_115657 (OMIM: 603458) ELAV-like protein 3 isofo ( 360) 2351 318.5 1.4e-86
NP_001411 (OMIM: 603458) ELAV-like protein 3 isofo ( 367) 2327 315.4 1.3e-85
XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like p ( 366) 2308 313.0 6.9e-85
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1950 266.4 6.9e-71
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369) 1950 266.5   7e-71
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1945 265.8 1.1e-70
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1944 265.7 1.2e-70
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1943 265.5 1.3e-70
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1943 265.5 1.3e-70
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371) 1943 265.6 1.3e-70
XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 1943 265.6 1.3e-70
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402) 1943 265.6 1.3e-70
XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 1942 265.4 1.4e-70
XP_016869898 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1942 265.5 1.5e-70
XP_016869903 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 1938 264.9 2.1e-70
XP_016869902 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 1938 264.9 2.1e-70
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 1936 264.6 2.4e-70
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 1931 264.0 3.9e-70
XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1930 263.9 4.3e-70
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 1930 263.9 4.3e-70
XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1926 263.4 6.2e-70
XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1926 263.4 6.2e-70
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 1924 263.1 7.2e-70
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1924 263.1 7.2e-70
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1912 261.5 2.1e-69
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380) 1342 187.5 4.2e-47
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383) 1342 187.5 4.2e-47
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393) 1337 186.9 6.7e-47
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380) 1336 186.7 7.2e-47
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1335 186.6 7.9e-47
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1335 186.6 7.9e-47
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385) 1335 186.6   8e-47
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416) 1335 186.7 8.2e-47


>>NP_115657 (OMIM: 603458) ELAV-like protein 3 isoform 2  (360 aa)
 initn: 2351 init1: 2351 opt: 2351  Z-score: 1675.2  bits: 318.5 E(85289): 1.4e-86
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
              310       320       330       340       350       360

>>NP_001411 (OMIM: 603458) ELAV-like protein 3 isoform 1  (367 aa)
 initn: 1618 init1: 1618 opt: 2327  Z-score: 1658.3  bits: 315.4 E(85289): 1.3e-85
Smith-Waterman score: 2327; 98.1% identity (98.1% similar) in 367 aa overlap (1-360:1-367)

               10        20        30        40        50        60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
              190       200       210       220       230       240

              250              260       270       280       290   
pF1KE0 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
       ::::::::::       :::::::::::::::::::::::::::::::::::::::::::
NP_001 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KE0 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
              310       320       330       340       350       360

           360
pF1KE0 TSKQHKA
       :::::::
NP_001 TSKQHKA
              

>>XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like prote  (366 aa)
 initn: 1594 init1: 1594 opt: 2308  Z-score: 1645.0  bits: 313.0 E(85289): 6.9e-85
Smith-Waterman score: 2308; 97.8% identity (97.8% similar) in 367 aa overlap (1-360:1-366)

               10        20        30        40        50        60
pF1KE0 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVT-ILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE0 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
     180       190       200       210       220       230         

              250              260       270       280       290   
pF1KE0 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
       ::::::::::       :::::::::::::::::::::::::::::::::::::::::::
XP_011 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KE0 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
     300       310       320       330       340       350         

           360
pF1KE0 TSKQHKA
       :::::::
XP_011 TSKQHKA
     360      

>>NP_001138248 (OMIM: 168360) ELAV-like protein 4 isofor  (366 aa)
 initn: 2109 init1: 1387 opt: 1950  Z-score: 1393.6  bits: 266.4 E(85289): 6.9e-71
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:3-366)

               10             20            30        40        50 
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
          ::...:: ::..::.     ::.  :    .:.  :...::::::::::::::::::
NP_001  MEQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
                10        20        30         40        50        

              60        70        80        90       100       110 
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
       :.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
       60        70        80        90       100       110        

             120       130       140       150       160       170 
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       :::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
      120       130       140       150       160       170        

             180       190       200       210       220       230 
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
       :::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
      180       190       200       210       220       230        

             240       250       260       270       280       290 
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
       ::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
      240       250       260       270        280       290       

             300       310       320       330       340       350 
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
       ::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
       300       310       320       330       340       350       

             360
pF1KE0 FKTSKQHKA
       :::.: ::.
NP_001 FKTNKAHKS
       360      

>>NP_001138249 (OMIM: 168360) ELAV-like protein 4 isofor  (369 aa)
 initn: 2109 init1: 1387 opt: 1950  Z-score: 1393.6  bits: 266.5 E(85289): 7e-71
Smith-Waterman score: 1950; 82.2% identity (93.7% similar) in 366 aa overlap (4-360:6-369)

                 10             20            30        40         
pF1KE0   MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQN
            ::...:: ::..::.     ::.  :    .:.  :...::::::::::::::::
NP_001 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQN
               10        20        30         40        50         

      50        60        70        80        90       100         
pF1KE0 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT
       :::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::
NP_001 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
      60        70        80        90       100       110         

     110       120       130       140       150       160         
pF1KE0 IKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVG
       :::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::
NP_001 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG
     120       130       140       150       160       170         

     170       180       190       200       210       220         
pF1KE0 FIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGP
       :::::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: ::
NP_001 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGP
     180       190       200       210       220       230         

     230       240       250       260       270       280         
pF1KE0 LHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEAD
       ::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:
NP_001 LHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSD
     240       250       260       270       280        290        

     290       300       310       320       330       340         
pF1KE0 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ
       ::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
      300       310       320       330       340       350        

     350       360
pF1KE0 VSFKTSKQHKA
       :::::.: ::.
NP_001 VSFKTNKAHKS
      360         

>>XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like prote  (379 aa)
 initn: 2104 init1: 1387 opt: 1945  Z-score: 1390.0  bits: 265.8 E(85289): 1.1e-70
Smith-Waterman score: 1945; 82.0% identity (93.7% similar) in 366 aa overlap (4-360:16-379)

                           10             20            30         
pF1KE0             MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKT
                      .:...:: ::..::.     ::.  :    .:.  :...::::::
XP_016 MFEISRTLNAALLNNEIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKT
               10        20        30        40         50         

      40        50        60        70        80        90         
pF1KE0 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT
       :::::::::::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::
XP_016 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT
      60        70        80        90       100       110         

     100       110       120       130       140       150         
pF1KE0 LNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD
       ::::.::::::::::::::::::::::::::::::::.:::.::::::::::::::::::
XP_016 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD
     120       130       140       150       160       170         

     160       170       180       190       200       210         
pF1KE0 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLY
       :::::::::::::::::::::::::::::::: ::.::::::::::::::..::::..::
XP_016 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY
     180       190       200       210       220       230         

     220       230       240       250       260       270         
pF1KE0 QSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCI
       ::  ::: ::::::.:::::::::::::::::::::.::::..:.:... : . :.::::
XP_016 QSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCI
     240       250       260       270       280       290         

     280       290       300       310       320       330         
pF1KE0 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN
       :::::::..:::::::::::::::.::::::::.::::::::::::::::::::::::::
XP_016 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
      300       310       320       330       340       350        

     340       350       360
pF1KE0 GYRLGERVLQVSFKTSKQHKA
       :::::.:::::::::.: ::.
XP_016 GYRLGDRVLQVSFKTNKAHKS
      360       370         

>>NP_001138246 (OMIM: 168360) ELAV-like protein 4 isofor  (366 aa)
 initn: 2103 init1: 1387 opt: 1944  Z-score: 1389.4  bits: 265.7 E(85289): 1.2e-70
Smith-Waterman score: 1944; 81.5% identity (93.8% similar) in 368 aa overlap (2-360:1-366)

               10             20            30        40        50 
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
        ...:...:: ::..::.     ::.  :    .:.  :...::::::::::::::::::
NP_001  MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
                10        20        30         40        50        

              60        70        80        90       100       110 
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
       :.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
       60        70        80        90       100       110        

             120       130       140       150       160       170 
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       :::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
      120       130       140       150       160       170        

             180       190       200       210       220       230 
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
       :::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
      180       190       200       210       220       230        

             240       250       260       270       280       290 
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
       ::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
      240       250       260       270        280       290       

             300       310       320       330       340       350 
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
       ::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
       300       310       320       330       340       350       

             360
pF1KE0 FKTSKQHKA
       :::.: ::.
NP_001 FKTNKAHKS
       360      

>>NP_001311143 (OMIM: 168360) ELAV-like protein 4 isofor  (365 aa)
 initn: 2102 init1: 1387 opt: 1943  Z-score: 1388.7  bits: 265.5 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:3-365)

               10             20            30        40        50 
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
           :...:: ::..::.     ::.  :    .:.  :...::::::::::::::::::
NP_001   MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
                 10        20        30         40        50       

              60        70        80        90       100       110 
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
       :.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
        60        70        80        90       100       110       

             120       130       140       150       160       170 
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       :::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       120       130       140       150       160       170       

             180       190       200       210       220       230 
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
       :::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
       180       190       200       210       220       230       

             240       250       260       270       280       290 
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
       ::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
       240       250       260       270        280       290      

             300       310       320       330       340       350 
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
       ::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
        300       310       320       330       340       350      

             360
pF1KE0 FKTSKQHKA
       :::.: ::.
NP_001 FKTNKAHKS
        360     

>>NP_001311141 (OMIM: 168360) ELAV-like protein 4 isofor  (365 aa)
 initn: 2102 init1: 1387 opt: 1943  Z-score: 1388.7  bits: 265.5 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:3-365)

               10             20            30        40        50 
pF1KE0 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLPQNMT
           :...:: ::..::.     ::.  :    .:.  :...::::::::::::::::::
NP_001   MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLPQNMT
                 10        20        30         40        50       

              60        70        80        90       100       110 
pF1KE0 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
       :.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::::::
NP_001 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
        60        70        80        90       100       110       

             120       130       140       150       160       170 
pF1KE0 VSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       :::::::::::::::::::::::::.:::.::::::::::::::::::::::::::::::
NP_001 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI
       120       130       140       150       160       170       

             180       190       200       210       220       230 
pF1KE0 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLH
       :::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: ::::
NP_001 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLH
       180       190       200       210       220       230       

             240       250       260       270       280       290 
pF1KE0 HQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADES
       ::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::..:::
NP_001 HQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPDSDES
       240       250       260       270        280       290      

             300       310       320       330       340       350 
pF1KE0 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS
       ::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::::::
NP_001 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS
        300       310       320       330       340       350      

             360
pF1KE0 FKTSKQHKA
       :::.: ::.
NP_001 FKTNKAHKS
        360     

>>NP_001281277 (OMIM: 168360) ELAV-like protein 4 isofor  (371 aa)
 initn: 2102 init1: 1387 opt: 1943  Z-score: 1388.6  bits: 265.6 E(85289): 1.3e-70
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (5-360:9-371)

                   10             20            30        40       
pF1KE0     MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
               :...:: ::..::.     ::.  :    .:.  :...::::::::::::::
NP_001 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
               10        20        30        40         50         

        50        60        70        80        90       100       
pF1KE0 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
       :::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
NP_001 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
      60        70        80        90       100       110         

       110       120       130       140       150       160       
pF1KE0 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
       :::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
NP_001 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
     120       130       140       150       160       170         

       170       180       190       200       210       220       
pF1KE0 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
       :::::::::::::::::::::::: ::.::::::::::::::..::::..::::  ::: 
NP_001 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
     180       190       200       210       220       230         

       230       240       250       260       270       280       
pF1KE0 GPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE
       ::::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::.
NP_001 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPD
     240       250       260       270       280        290        

       290       300       310       320       330       340       
pF1KE0 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV
       .:::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::
NP_001 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV
      300       310       320       330       340       350        

       350       360
pF1KE0 LQVSFKTSKQHKA
       :::::::.: ::.
NP_001 LQVSFKTNKAHKS
      360       370 




360 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:55:24 2016 done: Wed Nov  2 19:55:25 2016
 Total Scan time:  6.330 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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