GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:59:45

Sequence gi568815589r:131160825_131376179 : 215355 bp : 48.72% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2167   2349  183  1  0   90   64   121 0.938   8.80
 1.02 Intr +   3046   3131   86  1  2   59   91    56 0.611   2.46
 1.03 Intr +  13231  13494  264  2  0   45  111   138 0.239   9.28
 1.04 Intr +  14636  14797  162  0  0  104   98    55 0.987   8.05
 1.05 Intr +  17487  17586  100  1  1   52   63    58 0.525  -1.13
 1.06 Intr +  26465  26540   76  2  1   93   93    72 0.627   7.72
 1.07 Intr +  28229  28307   79  1  1   77   82    20 0.644  -0.58
 1.08 Intr +  36392  38191 1800  0  0   88  110   617 0.861  51.22
 1.09 Intr +  40823  40893   71  0  2  107   99    54 0.987   7.30
 1.10 Intr +  54388  54544  157  0  1   90  108    40 0.903   5.78
 1.11 Intr +  61954  62106  153  2  0  124   78    55 0.957   8.14
 1.12 Intr +  67336  67507  172  2  1   96  102    95 0.933  10.70
 1.13 Intr +  69806  69945  140  2  2   42   99    52 0.684   1.81
 1.14 Intr +  71460  71484   25  1  1  110   99     8 0.523   1.18
 1.15 Intr +  71597  71736  140  2  2   96   55    20 0.550  -0.39
 1.16 Intr +  72903  73091  189  1  0   40   68    95 0.019   2.26
 1.17 Intr +  75139  75216   78  2  0   71   75    36 0.019   0.12
 1.18 Intr +  79067  79196  130  0  1   89   33    78 0.002   2.15
 1.19 Intr +  91482  91663  182  0  2   99   36   200 0.954  15.41
 1.20 Term +  91871  92007  137  0  2   90   49   119 0.985   6.38
 1.21 PlyA +  93075  93080    6                               1.05

 2.07 PlyA -  97275  97270    6                               1.05
 2.06 Term - 100526  99998  529  1  1  112   48  1233 0.166 115.43
 2.05 Intr - 115311 115033  279  2  0   -4   84   469 0.187  33.89
 2.04 Intr - 116119 115866  254  1  2   96   33   154 0.192   6.93
 2.03 Intr - 116402 116327   76  1  1   45   66    88 0.328   1.82
 2.02 Intr - 119596 119420  177  0  0  102   56   107 0.341   7.93
 2.01 Init - 121088 121048   41  2  2   50   76    30 0.183  -2.32
 2.00 Prom - 126117 126078   40                              -5.36

 3.00 Prom + 128862 128901   40                              -4.36
 3.01 Init + 129174 129624  451  2  1   93   92   757 0.996  72.68
 3.02 Intr + 134852 134912   61  0  1  113  108   -21 0.084   0.19
 3.03 Intr + 140607 140752  146  0  2   54   48   102 0.109   2.73
 3.04 Intr + 147099 147459  361  1  1   93   32   689 0.743  58.08
 3.05 Term + 150269 150443  175  2  1   41   49   143 0.676   2.93
 3.06 PlyA + 161447 161452    6                               1.05

 4.02 PlyA - 161471 161466    6                               1.05
 4.01 Sngl - 179943 179608  336  0  0   55   43   239 0.685  12.13
 4.00 Prom - 182262 182223   40                              -4.96

 5.06 PlyA - 182430 182425    6                               1.05
 5.05 Term - 183424 183181  244  0  1  -28   54   213 0.406   1.67
 5.04 Intr - 183603 183524   80  0  2   75   71    62 0.020   1.55
 5.03 Intr - 192442 192305  138  1  0   72   37   149 0.009   8.86
 5.02 Intr - 209906 209855   52  1  1   77   79    40 0.071   0.91
 5.01 Init - 212617 212394  224  1  2   53   72   177 0.884   8.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  72630  72817  188  1  2  151   38    67 0.836   5.65
S.002 Term -  74921  74857   65  0  2   89   49    67 0.908   0.95
S.003 Intr -  75409  75334   76  1  1   51   80    72 0.894   1.79
S.004 Term - 127224 127054  171  0  0  120   43   139 0.954  10.43
S.005 Term - 192442 192233  210  1  0   72   39   187 0.819   9.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:131160825_131376179|GENSCAN_predicted_peptide_1|1441_aa
XHLLVPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSI
HSFDSDLESLCNALLKTTIESHTKSLPKVPASLSRSAFLSQRYYEDLDEVSSTSSVSQSL
ESEDARTSCKDDEAVVQAPRHAPVVRTPSIQPSLLPHAAPFAKSHLVHGSSPGVMGTSVA
TSASKIIPQGADSTMLATKTVKHGAPSPSHPISAPQAAAAAALRRQMASQAPAVNTLTES
TLKNVPQVVNVQELKNNPATPSTAMGSSVPYSTAKTPHPVLTPVAANQAKQGSLINSLKP
SGPTPASGQLSSGDKASGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSGITSASNT
TPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQAD
DSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSVAPPAAT
STSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATP
LPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQQS
AQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVP
PASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTSGSS
VFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQTGSTASTAAATPQV
SSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPASST
PTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGGTS
AATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSSSGSVFGSGNTGRGG
GFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKP
TGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSP
LGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLSQQTSGFGTQSSGF
SGFGSGTGGFSFGSNNSVCPGSVGVQQQGLGFVDLLFSVAIWQEVPGLAFLRGVVQREKS
TPANHSQEDCPVSVALRSQQSLHQPEHCVFKDGIRSHQRRVLINSIECAVVSLGPSALHI
GKRLNADTHITLVIGASDGNIGIEAKLSSSGTGRDPGPSRRTPVPHEVFPDPTADRQHSL
QEWGSGTRKGPAWVTEPSCKRKHRPGEPGDPGPPHRRGAGTRPLEELLAFTVSAWSLVNG
RLPSGKLLLRDSDPGWKAVGPAFRPPSHDRTARRRFCEPGGGPHHAETVGAFILDFQPPE
L

>gi568815589r:131160825_131376179|GENSCAN_predicted_CDS_1|4326_bp
nngcacctgcttgtgccagagcgagagacactgtttaacaccctagccaacaatcgggaa
atcatcaaccaacagaggaagaggctgaatcacctggtggatagtcttcagcagctccgc
ctttacaaacagacttccctgtggagcctgtcctcggctgttccttcccagagcagcatt
cacagttttgacagtgacctggaaagcctgtgcaatgctttgttgaaaaccaccatagaa
tctcacaccaaatccttgcccaaagtaccagccagcctgtctcgatcagcctttctgtct
cagagatattatgaagacttggatgaagtcagctcaacgtcatctgtctcccagtctctg
gagagtgaagatgcacggacgtcctgtaaagatgacgaggcagtggttcaggcccctcgg
cacgcccccgtggttcgcactccttccatccagcccagtctcttgccccatgcagcacct
tttgctaaatctcacctggttcatggttcttcacctggtgtgatgggaacttcagtggct
acatctgctagcaaaattattcctcaaggggccgatagcacaatgcttgccacgaaaacc
gtgaaacatggtgcacctagtccttcccaccccatctcagccccgcaggcagctgccgca
gcagcactcaggcggcagatggccagtcaggcaccagctgtaaacactttgactgaatca
acgttgaagaatgtccctcaagtggtaaatgtgcaggaattgaagaataaccctgcaacc
ccttctacagccatgggttcttcagtgccctactccacagccaaaacacctcacccagtg
ttgaccccagtggctgctaaccaagccaagcaggggtctctaataaattcccttaagcca
tctgggcctacaccagcatccggtcagttatcatctggtgacaaagcttcaggggcaaca
ccctccactaaagagtcaagccagccggacgcattctcatctggtgggggaagcaaacct
tcttatgaggccattcctgaaagctcacctccctcaggaatcacatccgcatcaaacacc
accccaggagaacctgccgcatctagcagcagacctgtggcaccttctggaactgctctt
tccaccacctctagtaagctggaaaccccaccgtccaagctgggagagcttctgtttcca
agttctttggctggagagactctgggaagtttttcaggactgcgggttggccaagcagat
gattctacaaaaccaaccaataaggcttcatccacaagcctaactagtacccagccaacc
aagacgtcaggcgtgccctcagggtttaattttactgcccccccggtgttagggaagcac
acggagccccctgtgacatcctctgcaaccaccacctcagtagcaccaccagcagccacc
agcacttcctcaactgccgtttttggcagtctgccagtcaccagtgcaggatcctctggg
gtcatcagttttggtgggacatctctaagtgctggcaagactagtttttcatttggaagc
caacagaccaatagcacagtgcccccatctgccccaccaccaactacagctgccactccc
cttccaacatcattccccacattgtcatttggtagcctcctgagttcagcaactaccccc
tccctgcctatgtccgctggcagaagcacagaagaggccacttcatcagctttgcctgag
aagccaggtgacagtgaggtctcagcatcagcagcctcacttctagaggagcaacagtca
gcccagcttccccaggctcctccgcaaacttctgactctgttaaaaaagaacctgttctt
gcccagcctgcagtcagcaactctggcactgcagcatctagtactagtcttgtagcactt
tctgcagaggctaccccagccaccacgggggtccctgatgccaggacggaggcagtacca
cctgcttcctccttttctgtgcctgggcagactgctgtcacagcagctgctatctcaagt
gcaggccctgtggccgtcgaaacatcaagtacccccatagcctccagcaccacgtccatt
gttgctcccggcccatctgcagaggcagcagcatttggtaccgtcacttctggctcatcc
gtctttgctcagcctcctgctgccagttctagctcagctttcaaccagctcaccaacaac
acagccactgccccctctgccacgcccgtgtttgggcaagtggcagccagcaccgcacca
agtctgtttgggcagcagactggtagcacagccagcacagcagctgccacaccacaggtc
agcagctcagggtttagcagcccagcttttggtaccacagccccaggggtctttggacag
acaaccttcgggcaggcctcagtctttgggcagtcggcgagcagtgctgcaagtgtcttt
tccttcagtcagcctgggttcagttccgtgcctgccttcggtcagcctgcttcctccact
cccacatccaccagtggaagtgtctttggtgccgcctcaagtaccagtagctccagttcc
ttctcatttggacagtcttctcccaacacaggaggggggctgtttggccaaagcaacgct
cctgcttttgggcagagtcctggctttggacagggaggctctgtctttggtggtacctca
gctgccaccacaacagcagcaacctctgggttcagcttttgccaagcttcaggttttggg
tctagtaatactggttctgtgtttggtcaagcagccagtactggtggaatagtctttggc
cagcaatcatcctcttccagtggtagcgtgtttgggtctggaaacactggaagaggggga
ggtttcttcagtggccttggaggaaaacccagtcaggatgcagccaacaaaaacccattc
agctcggccagtgggggctttggatccacagctacctcaaatacctctaacctatttgga
aacagtggggccaagacatttggtggatttgccagctcgtcgtttggagagcagaaaccc
actggcactttcagctctggaggaggaagtgtggcatcccaaggctttgggttttcctct
ccaaacaaaacaggtggcttcggtgctgctccagtgtttggcagccctcctacttttggg
ggatcccctgggtttggaggggtgccagcattcggttcagccccagcctttacaagccct
ctgggctcgacgggaggcaaagtgttcggagagggcactgcagctgccagcgcaggagga
ttcgggtttgggagcagcagcaacaccacatccttcggcacgctcgcgagtcagaatgcc
cccactttcggatcactgtcccaacagacttctggttttgggacccagagtagcggattc
tctggttttggatcaggcacaggagggttcagctttgggtcaaataactcagtttgtcct
ggaagtgtgggggttcagcagcagggtttgggttttgtggacttgctcttctctgtagca
atatggcaggaggtgccaggcctcgccttcttaagaggcgtggttcaaagagaaaagagc
acgcctgccaatcacagccaagaagattgccccgtttctgtggctctgagaagccagcag
agcctccatcagccagaacactgtgtcttcaaggatggcatcagaagtcaccagcgtcgg
gtgttgataaacagcatcgaatgtgccgtggtctcacttggacctagcgccctccacata
gggaagaggttgaatgctgacacacatatcacactggtaattggtgcttcagatggcaac
atagggatagaggccaaattgagctcctcagggacagggagagacccaggccccagcaga
cggaccccagtgccccacgaagtcttccctgatcccacagctgaccggcagcactcactt
caggaatggggctcggggacccgcaaaggtccagcctgggtgacagagcccagctgcaag
aggaagcaccgtcctggggagcccggagacccaggcccccctcacaggcgaggggctggc
acgcggcctctggaggaacttctggccttcaccgtctccgcctggtcactcgtcaatggc
cggctgccttctggaaagctgctgctgcgcgacagtgaccctgggtggaaggctgtggga
cctgccttccggcctccgtcacatgaccgcacagcgaggaggcgcttctgtgaaccagga
ggtggccctcaccacgcagaaactgtgggcgccttcatcttggacttccagcctccagaa
ctgtga

>gi568815589r:131160825_131376179|GENSCAN_predicted_peptide_2|451_aa
MAPGIIPDISGKGIHRHFTRAWMRHEPSTYAEAAVGLCPTPTELRKMTSRRKGCVGKRQG
RRGRELGKPPEPCGSRSPPTPPVRDGISGDVTGGYYSLVLGGRGEAGGGGRSAAPGPCTA
AGSDSGEGTRRPCVGTSGPRPRVGADGDPRRAPPSPASGRSPELASWKPRVGARPEGAGT
SAGALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRAS
AQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNY
PWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTW
LVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPS
ALVKPNANDAQVLMWRPKYGQPLVVIPPKHR

>gi568815589r:131160825_131376179|GENSCAN_predicted_CDS_2|1356_bp
atggctcctggcattatccccgacatctcagggaaggggatacaccggcacttcacacgc
gcgtggatgcgtcatgagccttccacatatgctgaggctgccgtgggtctgtgcccaaca
cccacggagctccggaaaatgacgagcaggaggaagggctgtgtagggaagcggcagggc
cggaggggccgcgagctggggaagccaccagaaccctgcggcagccgctcgccccccacc
ccgcccgtccgggacggtatcagcggagatgtcacgggcggctattattcgctggtcctc
ggcggccgcggcgaagcaggcggcggcggccggagcgcagccccgggaccctgcacggcg
gccggcagcgacagcggcgaagggacgcggcgcccctgcgtggggacgtccggcccgcgc
ccgcgagtgggcgccgacggggacccgcgccgcgctcccccgtcaccggcgagcggccgg
agccctgagctcgcctcctggaagccgcgggtcggcgctcgccccgagggcgccgggacc
tcggccggagcgctcctgtatgccatgggctgtattcagagcatcggaggcaaagccaga
gtcttccgggaagggatcacggtgattgatgtgaaagcctccatcgaccccgtccccact
agcatcgatgagtcctccagcgtggtgctccgctaccggacaccccacttccgggcctcg
gcccaggtggtcatgccgcccatccccaagaaggagacttgggtagttggctggatccag
gcgtgcagccacatggagttctacaaccagtacggcgagcagggcatgtccagctgggag
ctccccgacctccaggagggcaagatccaagccatcagcgactcggatggggtgaactac
ccctggtacggcaacaccacagagacctgcaccatcgtgggccccaccaagagggactcc
aagttcatcatcagcatgaatgacaacttttaccccagcgtcacatgggccgtgcccgtc
agcgagagcaacgtggccaagctcaccaatatctaccgggaccagagcttcaccacctgg
ctggtggccaccaacacctccaccaacgacatgatcatcctgcagacgctgcactggcgc
atgcagctcagcatcgaggtgaaccccaaccggcccctgggccagcgcgcccggctgcgg
gagcccatcgcccaggaccagcccaaaatcctgagcaagaatgagcccatcccgcccagc
gccctggtcaagcccaatgccaacgatgcccaggtcctcatgtggcggcccaagtacggg
cagccgctggtggtgatcccgcccaagcaccggtga

>gi568815589r:131160825_131376179|GENSCAN_predicted_peptide_3|397_aa
MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEPRSSGRKASGPSAQPPPAGDGARERR
QSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITG
HGIPWIGGTILCLVKSSTLAGQEVLMNLLLAPGNLHSTLCLCGFDCSRDLKFWQLFGHPD
PGWPPVTNHHHQEALLGLASLTCLEVVEVLEPGPDNFDPALLLDIMTVAGVQKLIKRRGP
YETSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVM
IGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAWAPGVVAPGGKEGTGTRCADM
AVSTKQTRDLTLPGFPWTSSLSDTDVSLEPSLCIPFP

>gi568815589r:131160825_131376179|GENSCAN_predicted_CDS_3|1194_bp
atgccagcttcccagagccgggcccgtgcccgggaccgcaacaacgtcctcaaccgggct
gagttcctgtccctgaaccagccccccaaggggggcccggagccccgcagctcgggcaga
aaggcctcgggcccatcagcacagcccccacctgctggtgacggggccagagagcgacgc
cagtcacagcagctgccagaggaggactgcatgcagctgaacccctccttcaagggcatc
gccttcaactccctgctggccatcgatatctgtatgtccaagcggctgggggtgtgcgct
ggccgggcggcgtcctgggccagtgcccgctccatggtcaagctcatcggcatcacgggc
cacggcatcccctggatcggaggcaccatcctctgcctggtgaagagcagcacactggcc
ggccaggaggtgctcatgaatctgctcctggcccctggcaacctccattctacactctgt
ctctgtggatttgactgttctagggacctcaaattctggcagctgttcgggcacccagac
cctggctggccaccagtcaccaaccaccaccaccaggaggccttgcttggcctggcctct
cttacttgtcttgaggtggtggaggtcttggaacctgggccagacaattttgaccctgcc
ctgctcctggacatcatgacggtggccggcgtgcagaagctcatcaagcggcgcggcccg
tacgagacgagccccagcctcctggactacctcaccatggacatctacgccttcccggcc
gggcacgccagccgcgccgccatggtgtccaagttcttcctcagccacctggtgctggcg
gtgcccctgcgtgtgctgctggtgctctgggccctctgcgtgggcctgtcccgcgtgatg
atcggccgccaccacgtcacggacgtcctctccggctttgtcatcggctacctccagttc
cgtctggtggagctggtctggatgccctccagcacctgccagatgctcatctctgcctgg
gctcctggcgttgttgcccctggtggcaaggaaggaactgggacacgatgtgctgacatg
gccgttagcacaaagcagacccgggatctgactcttccaggctttccctggacttcatca
ctctcagacaccgacgtgtctctagaaccatcactctgcatcccctttccatga

>gi568815589r:131160825_131376179|GENSCAN_predicted_peptide_4|111_aa
MKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINMVKTAILPKVIYRFNAIPVKLPMTF
FTELETTTLKFIWNQKRARIAKSILSKKNKAEGIMLPDFEPYYKATVTKTA

>gi568815589r:131160825_131376179|GENSCAN_predicted_CDS_4|336_bp
atgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaagaggacaca
aacaaatggaagaacattccatgctcatggataggaagaatcaatatggtgaaaacggcc
atactgcccaaggtaatttatagatttaatgccatccctgtcaagctaccaatgactttc
ttcacagaattggaaacaactactttaaagttcatatggaaccagaaaagagcccgcatc
gccaagtcaatcctaagcaaaaagaacaaagctgaaggtatcatgctacctgactttgaa
ccatactacaaggctacagtaaccaaaacagcatga

>gi568815589r:131160825_131376179|GENSCAN_predicted_peptide_5|245_aa
MLAVDSRRVPAPAAVLRVLGSARRSSAATVRLEGGGPAEAGWWPLPRERLSKMLTGALAR
EIERKSDAVVCVTPQCFTCINSLNPYDNPLQQVYAHRIESRDSNRNSYANIHSEVIHNSQ
KVGTIETSLSRGMDKHDVDRSSSPAMEQSWTGNDFDKLTEVGFRRINSIEKTLNDLMELK
TMARELRDACTSFSSRFDQVQERVSVIEDHMNEMKREEKFREKRTKPPRNMGPGEKPKST
FDWCT

>gi568815589r:131160825_131376179|GENSCAN_predicted_CDS_5|738_bp
atgctagcagttgactcccgcagggtcccggcgccggcagccgtgctgcgtgtgttgggt
agtgcgaggcggtccagtgcagcgacagtccggctcgagggcggagggccagccgaagcg
gggtggtggccgctgccccgggaaagactgtccaagatgctgacaggagctttggctcgt
gagattgagaggaagtcagacgccgtggtctgtgtaaccccccagtgctttacatgcatc
aattcattaaatccttacgacaaccctctgcagcaggtctatgcccacaggattgaaagc
agggactcaaacaggaactcgtacgccaacattcatagcgaggttattcacaacagccaa
aaggtgggaacaattgaaacatccctcagcagaggaatggacaagcacgatgtggatcgc
agctcctcgccagcaatggaacaaagctggacagggaatgactttgacaagttgacagaa
gtaggcttcagaagaataaacagcatagagaagaccttaaatgacctgatggagctgaaa
accatggcacgagaactacgtgacgcatgcacaagcttcagtagccgatttgatcaagtg
caagaaagggtatcagtgattgaagatcacatgaatgaaatgaagcgagaagagaagttt
agagaaaaaagaacaaagcctccaagaaatatgggaccaggtgaaaagcccaaatctacc
tttgattggtgtacctga