FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0573, 289 aa
  1>>>pF1KE0573 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0640+/-0.00073; mu= 9.3569+/- 0.044
 mean_var=162.0012+/-33.033, 0's: 0 Z-trim(115.5): 45  B-trim: 0 in 0/50
 Lambda= 0.100766
 statistics sampled from 15976 (16021) to 15976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS45547.2 PABPN1L gene_id:390748|Hs108|chr16     ( 278) 1861 281.6 4.6e-76
CCDS73925.1 PABPN1L gene_id:390748|Hs108|chr16     ( 255) 1325 203.6 1.2e-52
CCDS9592.1 PABPN1 gene_id:8106|Hs108|chr14         ( 306)  576 94.8 8.4e-20
CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14   ( 333)  568 93.7   2e-19


>>CCDS45547.2 PABPN1L gene_id:390748|Hs108|chr16          (278 aa)
 initn: 1900 init1: 1852 opt: 1861  Z-score: 1479.1  bits: 281.6 E(32554): 4.6e-76
Smith-Waterman score: 1861; 96.8% identity (98.2% similar) in 278 aa overlap (1-278:1-277)

               10        20        30        40        50        60
pF1KE0 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
              190       200       210       220       230       240

              250       260       270       280         
pF1KE0 PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK
       ::::::::::::::::::::::::::. . ..: :  :           
CCDS45 PGSRGAPFPHSGLQGRPRLRPQGQNRARGKFSP-WFSPY          
              250       260       270                   

>>CCDS73925.1 PABPN1L gene_id:390748|Hs108|chr16          (255 aa)
 initn: 1348 init1: 1323 opt: 1325  Z-score: 1058.4  bits: 203.6 E(32554): 1.2e-52
Smith-Waterman score: 1329; 76.8% identity (85.8% similar) in 267 aa overlap (1-266:1-254)

               10        20        30        40        50        60
pF1KE0 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
              130       140       150       160       170       180

              190       200        210       220       230         
pF1KE0 DKFSGHPKGYAYIEFATKGSV-QAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRG
       :::::::::    : .. ::. :.:  ....   :          . :. ....:.:  .
CCDS73 DKFSGHPKGCCRKEPTSLGSAPQTAGAFEDTQAPG----------GHPSPTAASRAGPGS
              190       200       210                 220       230

     240       250       260       270       280         
pF1KE0 HPGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK
          .: .:  .:  .:  :..  :..:                       
CCDS73 DHKGRTGPVENSH-HGFHRIK--GKTRF                      
              240        250                             

>>CCDS9592.1 PABPN1 gene_id:8106|Hs108|chr14              (306 aa)
 initn: 611 init1: 504 opt: 576  Z-score: 469.0  bits: 94.8 E(32554): 8.4e-20
Smith-Waterman score: 598; 46.2% identity (66.7% similar) in 240 aa overlap (41-273:85-305)

               20        30        40        50        60        70
pF1KE0 PPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEEDQDGDAGFLLS
                                     ::  : :   ..:::.     .:: :    
CCDS95 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG----
           60        70        80        90       100       110    

               80        90       100       110       120       130
pF1KE0 LLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETV
               .  . : :::::: .:  ::  : . .   .:...:.. . .      : ..
CCDS95 --------DGAIEDPELEAIKARVREME--EEAEKLKELQNEVEKQMNMSP----PPGNA
                      120       130         140       150          

              140       150       160       170       180       190
pF1KE0 GCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGY
       : :.  . :::.::: ::.::::::::..::::::::  :: :.:::::::::::::::.
CCDS95 G-PVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF
         160       170       180       190       200       210     

              200       210       220       230       240          
pF1KE0 AYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFP-
       :::::. : ::.... ::.:::::: :::.::::: ::::.::::  :..  .: . .  
CCDS95 AYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNS
         220       230       240       250       260       270     

          250       260        270       280         
pF1KE0 -----HSGLQGRPRLRP-QGQNRTPAALTPLWARPLPWVVVSHVIK
            .::...::: :  .:. :. .  .:                
CCDS95 SRSRFYSGFNSRPRGRVYRGRARATSWYSPY               
         280       290       300                     

>>CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14        (333 aa)
 initn: 567 init1: 504 opt: 568  Z-score: 462.2  bits: 93.7 E(32554): 2e-19
Smith-Waterman score: 568; 51.3% identity (73.3% similar) in 195 aa overlap (86-273:145-332)

          60        70        80        90       100       110     
pF1KE0 DAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEE
                                     :::::: .:  ::  : . .   .:...:.
CCDS55 MEPLVGQVQEWMVAYLETQLADWIHSSGGWELEAIKARVREME--EEAEKLKELQNEVEK
          120       130       140       150         160       170  

         120       130       140       150       160       170     
pF1KE0 EEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR
       . . .      : ..: :.  . :::.::: ::.::::::::..::::::::  :: :.:
CCDS55 QMNMSP----PPGNAG-PVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNR
                180        190       200       210       220       

         180       190       200       210       220       230     
pF1KE0 VTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRG
       ::::::::::::::.:::::. : ::.... ::.:::::: :::.::::: ::::.::::
CCDS55 VTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRG
       230       240       250       260       270       280       

         240             250       260        270       280        
pF1KE0 GLRGHPGSRGAPFP------HSGLQGRPRLRP-QGQNRTPAALTPLWARPLPWVVVSHVI
         :..  .: . .       .::...::: :  .:. :. .  .:               
CCDS55 FPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY              
       290       300       310       320       330                 

        
pF1KE0 K




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:41:00 2016 done: Wed Nov  2 22:41:01 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]