Result of FASTA (omim) for pF1KE0569
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0569, 194 aa
  1>>>pF1KE0569 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2606+/-0.000365; mu= 13.5380+/- 0.023
 mean_var=63.7721+/-13.004, 0's: 0 Z-trim(113.1): 11  B-trim: 0 in 0/52
 Lambda= 0.160605
 statistics sampled from 22222 (22232) to 22222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.261), width:  16
 Scan time:  5.830

The best scores are:                                      opt bits E(85289)
NP_072098 (OMIM: 171490) phosducin isoform b [Homo ( 194) 1271 302.9 2.1e-82
NP_002588 (OMIM: 171490) phosducin isoform a [Homo ( 246) 1271 303.0 2.6e-82
XP_011507905 (OMIM: 171490) PREDICTED: phosducin i ( 246) 1271 303.0 2.6e-82
NP_005379 (OMIM: 604421) phosducin-like protein [H ( 301)  646 158.2 1.2e-38
XP_016870274 (OMIM: 604421) PREDICTED: phosducin-l ( 236)  613 150.5 1.9e-36
NP_076970 (OMIM: 611678) phosducin-like protein 3  ( 239)  206 56.2 4.8e-08
XP_016860379 (OMIM: 611678) PREDICTED: phosducin-l ( 189)  203 55.4 6.4e-08
XP_011532676 (OMIM: 611676) PREDICTED: phosducin-l ( 209)  202 55.2 8.2e-08
NP_689614 (OMIM: 611676) phosducin-like protein 2  ( 241)  202 55.3 9.2e-08


>>NP_072098 (OMIM: 171490) phosducin isoform b [Homo sap  (194 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1600.4  bits: 302.9 E(85289): 2.1e-82
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE0 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV
              130       140       150       160       170       180

              190    
pF1KE0 HVLEHTKIEEEDVE
       ::::::::::::::
NP_072 HVLEHTKIEEEDVE
              190    

>>NP_002588 (OMIM: 171490) phosducin isoform a [Homo sap  (246 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1598.9  bits: 303.0 E(85289): 2.6e-82
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:53-246)

                                             10        20        30
pF1KE0                               MSSPQSRNGKDSKERVSRKMSIQEYELIHK
                                     ::::::::::::::::::::::::::::::
NP_002 KGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHK
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE0 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
             90       100       110       120       130       140  

              100       110       120       130       140       150
pF1KE0 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
            150       160       170       180       190       200  

              160       170       180       190    
pF1KE0 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
       ::::::::::::::::::::::::::::::::::::::::::::
NP_002 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
            210       220       230       240      

>>XP_011507905 (OMIM: 171490) PREDICTED: phosducin isofo  (246 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1598.9  bits: 303.0 E(85289): 2.6e-82
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:53-246)

                                             10        20        30
pF1KE0                               MSSPQSRNGKDSKERVSRKMSIQEYELIHK
                                     ::::::::::::::::::::::::::::::
XP_011 KGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHK
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE0 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
             90       100       110       120       130       140  

              100       110       120       130       140       150
pF1KE0 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
            150       160       170       180       190       200  

              160       170       180       190    
pF1KE0 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
       ::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
            210       220       230       240      

>>NP_005379 (OMIM: 604421) phosducin-like protein [Homo   (301 aa)
 initn: 683 init1: 645 opt: 646  Z-score: 814.9  bits: 158.2 E(85289): 1.2e-38
Smith-Waterman score: 646; 49.2% identity (84.2% similar) in 183 aa overlap (5-187:104-286)

                                         10        20        30    
pF1KE0                           MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKED
                                     .... :: .:..: ::...:. .......:
NP_005 TEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDD
            80        90       100       110       120       130   

           40        50        60        70        80        90    
pF1KE0 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK
       :. :..::.: :..:.:.:  ::..  :.:. .:. ::. :.:: :  .:.:::::::: 
NP_005 EEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIP
           140       150       160       170       180       190   

          100       110       120       130       140       150    
pF1KE0 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE
       : .:.:. . ::::::: :::::.:.:  ::...:. ..::.::::::::::.::. :..
NP_005 GTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTD
           200       210       220       230       240       250   

          160       170       180       190            
pF1KE0 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE        
       :....::: :.:.::.:.:::::.:: ::  ..               
NP_005 QLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID
           260       270       280       290       300 

>>XP_016870274 (OMIM: 604421) PREDICTED: phosducin-like   (236 aa)
 initn: 615 init1: 577 opt: 613  Z-score: 775.2  bits: 150.5 E(85289): 1.9e-36
Smith-Waterman score: 613; 50.3% identity (84.6% similar) in 169 aa overlap (19-187:53-221)

                           10        20        30        40        
pF1KE0             MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQD
                                     .:...:. .......::. :..::.: :..
XP_016 TRTRTEADVPQPAVLCLQRLSWQAKASQLTQMTLKEFAIMNEDQDDEEFLQQYRKQRMEE
             30        40        50        60        70        80  

       50        60        70        80        90       100        
pF1KE0 MHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAA
       :.:.:  ::..  :.:. .:. ::. :.:: :  .:.:::::::: : .:.:. . ::::
XP_016 MRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAA
             90       100       110       120       130       140  

      110       120       130       140       150       160        
pF1KE0 EYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESF
       ::: :::::.:.:  ::...:. ..::.::::::::::.::. :..:....::: :.:.:
XP_016 EYPAVKFCKVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAF
            150       160       170       180       190       200  

      170       180       190            
pF1KE0 LNEYGLLPEREVHVLEHTKIEEEDVE        
       :.:.:::::.:: ::  ..               
XP_016 LQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID
            210       220       230      

>>NP_076970 (OMIM: 611678) phosducin-like protein 3 [Hom  (239 aa)
 initn: 145 init1: 118 opt: 206  Z-score: 265.4  bits: 56.2 E(85289): 4.8e-08
Smith-Waterman score: 206; 28.4% identity (62.2% similar) in 148 aa overlap (5-150:36-179)

                                         10        20        30    
pF1KE0                           MSSPQSRNGKDSKERVSRKMSIQEYELIHKE--K
                                     ..:  ..:  .. . :...: :  . :  .
NP_076 ADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNE
          10        20        30        40        50        60     

             40        50        60        70        80        90  
pF1KE0 EDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDG
       :::  .. :::. . .  .  ..  ..: : :. .::.... . :  .   ...:.:..:
NP_076 EDERAIEMYRRRRLAEW-KATKLKNKFGEVLEI-SGKDYVQEVTKAGEGLWVILHLYKQG
          70        80         90        100       110       120   

            100       110       120       130       140       150  
pF1KE0 IKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISV
       :  :  .:. :. :: ..: :::  ::: .:     .    :::...:  :.. ..::  
NP_076 IPLCALINQHLSGLARKFPDVKF--IKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGP
           130       140         150       160       170       180 

            160       170       180       190                    
pF1KE0 AEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE                
                                                                 
NP_076 LVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD
             190       200       210       220       230         

>>XP_016860379 (OMIM: 611678) PREDICTED: phosducin-like   (189 aa)
 initn: 145 init1: 118 opt: 203  Z-score: 263.2  bits: 55.4 E(85289): 6.4e-08
Smith-Waterman score: 203; 30.1% identity (62.4% similar) in 133 aa overlap (20-150:1-129)

               10        20        30          40        50        
pF1KE0 MSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCMQDMHQKLSFGPR
                          :...: :  . :  .:::  .. :::. . .  .  ..  .
XP_016                    MTLEELEDHEDEFNEEDERAIEMYRRRRLAEW-KATKLKNK
                                  10        20        30         40

       60        70        80        90       100       110        
pF1KE0 YGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKI
       .: : :. .::.... . :  .   ...:.:..::  :  .:. :. :: ..: :::  :
XP_016 FGEVLEI-SGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKF--I
                50        60        70        80        90         

      120       130       140       150       160       170        
pF1KE0 KASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPER
       :: .:     .    :::...:  :.. ..::                            
XP_016 KAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTD
       100       110       120       130       140       150       

      180       190                    
pF1KE0 EVHVLEHTKIEEEDVE                
                                       
XP_016 LEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD
       160       170       180         

>>XP_011532676 (OMIM: 611676) PREDICTED: phosducin-like   (209 aa)
 initn: 143 init1:  73 opt: 202  Z-score: 261.3  bits: 55.2 E(85289): 8.2e-08
Smith-Waterman score: 202; 24.7% identity (66.0% similar) in 150 aa overlap (7-154:4-149)

               10        20        30          40        50        
pF1KE0 MSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCMQDMHQKLSFGPR
             :  :..  .  .::.. . .  . :  .:: . .. ::.. .:.  . :.   .
XP_011    MVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEW-KALKKKQK
                  10        20        30        40         50      

       60        70        80        90       100       110        
pF1KE0 YGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKI
       .: . :. .:.:... . .  . . ...:.:...:  :  .:. :. :: ..: .::  .
XP_011 FGELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKF--V
         60         70        80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 KASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPER
       ::  ..  ...  . :::...::.:.. ..::.. :                        
XP_011 KAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQTD
           120       130       140       150       160       170   

      180       190                        
pF1KE0 EVHVLEHTKIEEEDVE                    
                                           
XP_011 LEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDTK
           180       190       200         

>>NP_689614 (OMIM: 611676) phosducin-like protein 2 [Hom  (241 aa)
 initn: 143 init1:  73 opt: 202  Z-score: 260.3  bits: 55.3 E(85289): 9.2e-08
Smith-Waterman score: 202; 24.7% identity (66.0% similar) in 150 aa overlap (7-154:36-181)

                                       10        20        30      
pF1KE0                         MSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KED
                                     :  :..  .  .::.. . .  . :  .::
NP_689 EDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEED
          10        20        30        40        50        60     

           40        50        60        70        80        90    
pF1KE0 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK
        . .. ::.. .:.  . :.   ..: . :. .:.:... . .  . . ...:.:...: 
NP_689 MQAVETYRKKRLQEW-KALKKKQKFGELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIP
          70        80         90        100       110       120   

          100       110       120       130       140       150    
pF1KE0 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE
        :  .:. :. :: ..: .::  .::  ..  ...  . :::...::.:.. ..::.. :
NP_689 MCLLVNQHLSLLARKFPETKF--VKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIE
           130       140         150       160       170       180 

          160       170       180       190                        
pF1KE0 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE                    
                                                                   
NP_689 CGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDTK
             190       200       210       220       230       240 




194 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:52:11 2016 done: Wed Nov  2 22:52:12 2016
 Total Scan time:  5.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com