GENSCAN 1.0	Date run:  6-Nov-116	Time: 04:48:42

Sequence gi568815592f:52971024_53197827 : 226804 bp : 41.52% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    684    679    6                               1.05
 1.01 Sngl -   4259   3972  288  2  0   88   50   151 0.346   6.64
 1.00 Prom -   6853   6814   40                              -2.85

 2.04 PlyA -   6951   6946    6                               1.05
 2.03 Term -   7569   7447  123  0  0  105   41   118 0.991   6.20
 2.02 Intr -  11682  11551  132  0  0   84   99    43 0.958   4.92
 2.01 Init -  13575  13441  135  0  0   47  100   118 0.524   9.13
 2.00 Prom -  21336  21297   40                              -5.05

 3.14 PlyA -  22686  22681    6                               1.05
 3.13 Term -  23238  22967  272  1  2   73   42   243 0.963  12.86
 3.12 Intr -  35414  35292  123  0  0   56  105    80 0.943   6.14
 3.11 Intr -  38544  38416  129  1  0   82  109    46 0.968   5.85
 3.10 Intr -  40894  40746  149  0  2   83   50   197 0.566  14.36
 3.09 Intr -  41204  41146   59  2  2   77   81    15 0.452  -3.54
 3.08 Intr -  42959  42639  321  2  0   76   97   287 0.756  23.53
 3.07 Intr -  45227  45060  168  2  0   84    5   160 0.873   6.52
 3.06 Intr -  47478  47307  172  2  1   59   90    51 0.472   1.42
 3.05 Intr -  48336  48204  133  1  1   73   23   175 0.562   8.28
 3.04 Intr -  60121  60042   80  0  2   90   90    44 0.010   3.08
 3.03 Intr -  61631  61510  122  2  2   83   77    73 0.007   4.07
 3.02 Intr -  62424  62349   76  2  1   58   83    37 0.003  -1.20
 3.01 Init -  70213  70113  101  1  2   82  106    88 0.042   9.79
 3.00 Prom -  72318  72279   40                              -7.05

 4.04 PlyA -  73516  73511    6                               1.05
 4.03 Term -  82968  82819  150  0  0   63   48   117 0.500   2.13
 4.02 Intr -  87856  87774   83  2  2   84   73    32 0.255  -0.26
 4.01 Init -  91051  90859  193  1  1   42   55   159 0.488   7.19
 4.00 Prom -  91797  91758   40                              -8.55

 5.03 PlyA -  92392  92387    6                               1.05
 5.02 Term -  94656  94321  336  0  0   92   40   338 0.656  22.99
 5.01 Init -  97187  97176   12  2  0   77  121    23 0.422   3.64
 5.00 Prom -  97460  97421   40                              -6.15

 6.00 Prom +  97526  97565   40                              -6.45
 6.01 Init + 102470 102615  146  1  2   27  -24   186 0.296   0.94
 6.02 Intr + 103218 103347  130  0  1  108   80   -33 0.478  -2.32
 6.03 Intr + 105463 105520   58  0  1   71   93    87 0.880   5.04
 6.04 Intr + 107776 107875  100  2  1   87   37   131 0.993   6.15
 6.05 Intr + 109945 110075  131  1  2  102   64   132 0.994  11.62
 6.06 Intr + 111481 111595  115  2  1   67   79   107 0.892   6.29
 6.07 Intr + 121406 121524  119  2  2   90  115    36 0.826   5.69
 6.08 Intr + 121711 121801   91  2  1   70   87    47 0.989   0.93
 6.09 Intr + 122443 122538   96  1  0   89   69    65 0.880   2.91
 6.10 Intr + 124490 124641  152  2  2  109   58    94 0.028   7.39
 6.11 Intr + 139149 139201   53  1  2   88   73    59 0.132   2.11
 6.12 Term + 148803 149021  219  2  0   80   48   130 0.568   4.26
 6.13 PlyA + 150683 150688    6                               1.05

 7.07 PlyA - 150743 150738    6                               1.05
 7.06 Term - 157773 157183  591  0  0   80   46   383 0.618  26.84
 7.05 Intr - 159908 159780  129  2  0   61   51    88 0.752   2.37
 7.04 Intr - 161096 160984  113  0  2  101   47   117 0.959   8.08
 7.03 Intr - 163301 163049  253  2  1   61   75   215 0.969  13.58
 7.02 Intr - 174739 174535  205  0  1   56   91   134 0.490   8.78
 7.01 Init - 179177 179092   86  2  2   77   84    81 0.924   5.16
 7.00 Prom - 180323 180284   40                              -7.45

 8.00 Prom + 189811 189850   40                              -5.25
 8.01 Init + 205339 205485  147  0  0   73    9   216 0.126  12.34
 8.02 Intr + 212175 212356  182  2  2   61   67   106 0.008   3.54
 8.03 Term + 221822 221891   70  2  1   83   48    65 0.134  -1.57
 8.04 PlyA + 222530 222535    6                               1.05

 9.02 PlyA - 224823 224818    6                               1.05
 9.01 Term - 225923 225726  198  2  0   18   33   219 0.840   5.82

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  60545  60600   56  1  2   42   99    94 0.893   6.71
S.002 Term +  61888  61987  100  1  1   70   33   130 0.881   2.32
S.003 Term + 126699 126807  109  0  1  109   43    96 0.881   4.20


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_1|95_aa
MPKWGSCRGFSVRNKRGKMDSLGPWCLGQKCQGTQNKATLSERFWQIECLKKHLTLTLLL
SSPGRSSSAGANLPRGWNRAESESLGTGAATDNNQ

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_1|288_bp
atgcctaaatggggcagttgcagaggcttcagtgtcaggaacaaaagaggaaaaatggac
agcttgggaccctggtgtctaggacagaagtgccaagggacccagaataaagccacactt
tcagagaggttttggcagattgagtgcttgaagaaacacttgactctgactctcctcctg
tcctcacctggccgaagcagttctgcaggggccaacctccctaggggatggaacagagca
gaaagtgaatccctcgggacaggggctgcaacagacaataaccagtag

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_2|129_aa
MYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQL
SLADVILLQTILALEEKIPNILSAFPFLQEYTVKLSNIPTIKRFLEPGSKKKPPPDEIYV
RTVYNIFRP

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_2|390_bp
atgtacgtggaggggacactggatctgctggaactgcttatcatgcatcctttcttaaaa
ccagatgatcagcaaaaggaagtggttaacatggcccagaaggctataattagatacttt
cctgtgtttgaaaagattttaaggggtcacggacaaagctttcttgttggtaatcagctg
agccttgcagatgtgattttactccaaaccattttagctctagaagagaaaattcctaat
atcctgtctgcatttcctttcctccaggaatacacagtgaaactaagtaatatccctaca
attaagagattccttgaacctggcagcaagaagaagcctccccctgatgaaatttatgtg
agaaccgtctacaacatctttaggccataa

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_3|634_aa
MNRYTTIRQLGDGTYGSVLLGRSIESGELIAIKKTSNTNRKQCAHGYTHMYAHVPGRGKS
LKKLNHANVVKLKEVIRENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQGL
AFIHKHGFFHRDLKPENLLCMGPELVKIADFGLAREIRSKPPYTDYVSTRWYRAPEVLLR
STNYSSPIDVWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLSSA
MNFRWPQCVPNNLKTLIPNASSEAVQLLRDMLQWDPKKRPTASQALRYPYFQVGHPLGST
TQNLQDSEKPQKGILEKAGPPPYIKPVPPAQPPAKPHTRISSRQHQASQPPLHLTYPYKA
EVSRTDHPSHLQEDKPSPLLFPSLHNKHPQSKITAGLEHKNGEIKPKSRRRFESVLDLKP
SEPVGTGNSAPTQTSYQRRDTPTLRSAAKQHYLKHSRYLPGISIRNGILSNPGKEFIPPN
PWSSSGLSGKSSGTMSVISKVNSVGSSSTSSSGLTGNYVPSFLKKEIGSAMQRVHLAPIP
DPSPESLKSYHGSKAQAPLSQRKRPDGVREMGFSCRRSRGTLYAVSSRICHTAFETFERK
IRFEAPFSSSSRPPKSQARFTESDTIPEGIFLYN

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_3|1905_bp
atgaatagatacacaacaatcaggcagctcggggatggaacctacggttccgtcctgctg
ggaagaagcattgagtctggggagctgatcgctattaaaaaaactagcaatacaaacaga
aaacagtgtgcacatggctatactcacatgtacgcacatgttccaggaagaggaaagtct
ttaaagaagctcaaccatgccaatgtagtcaaattaaaagaagttatcagggaaaatgat
catctttattttatcttcgagtacatgaaggaaaatctttaccagctcattaaagagaga
aataagttgtttcctgagtctgctataaggaatatcatgtatcagatattacaaggactc
gcatttattcacaaacacggcttctttcatcgagacttaaagcctgagaacctcctctgc
atgggaccagaacttgtgaaaattgcagactttggtttggcccgagaaatacgatcaaaa
cctccatatacagattatgtatctaccagatggtacagggctccagaagtactcctgagg
tctaccaactacagctcccccattgacgtctgggcggtgggctgcatcatggcagaagtt
tacaccctcaggccactcttccctggagccagtgaaattgacacaatattcaaaatttgc
caagtgctggggacaccaaaaaagactgactggcctgaaggctatcaactttcaagtgca
atgaacttccgttggccacagtgtgtacccaataacttaaagaccttgattcccaatgct
agcagtgaagcagtccagctcctgagagacatgcttcagtgggatcccaagaaacgacca
acagctagtcaggcacttcgatatccttacttccaagttggacacccactaggcagcacc
acacaaaaccttcaggattcagaaaaaccacagaaaggcatcctggaaaaggcaggccca
cctccttatattaagccagtcccacctgcccagccaccagccaagccacacacacgaatt
tcttcacgacagcatcaagccagccagccccctctgcatctcacgtacccctacaaagca
gaggtctccaggacagatcacccaagccatctccaggaggacaagccaagcccgttgctt
ttcccatccctccacaacaagcatccacagtcgaaaatcacagctggcctggagcacaaa
aatggtgagataaagccaaagagtaggagaaggtttgagagtgttttggacctgaagccc
tctgagcctgtgggcacaggaaacagtgcccccacccagacgtcatatcagcggcgagac
acgcccaccctgagatctgcagccaagcagcactatttgaagcactctcgatacttgcct
gggatcagtataagaaatggcatactctcgaatccaggcaaggaatttattccacctaat
ccatggtctagttctggcttgtctggaaaatcttcagggacaatgtcagtaatcagcaaa
gtaaattcagttggttccagctctacaagttctagtggactgactggaaactatgtccct
tcctttctgaaaaaagaaatcggttctgctatgcagagggtacacctagcacctattcca
gacccttcccctgaaagcctgaaaagctatcatggcagcaaggcccaagctccactatcc
caacggaagaggccggatggagtccgtgagatgggttttagctgccgccggagtcgaggt
accttatatgctgtttcttcacggatttgtcatacagcttttgagacctttgaaagaaaa
atacgttttgaagcaccgttcagttctagttctcgtccaccaaaatcacaggcacgcttc
actgagtcagataccatccctgaagggatttttctttataattag

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_4|141_aa
MVDRADLQRGVRSESEIALRSAGVRGPWALCCPRPRAAPGGSAARARANRTQCRDAQGQR
GELQGSCRVGVVPSRSIDVCPYKMHFSACGIYTNASSIPDTESQNHTALEEETTLEQVPC
PNSTKSKLKDQEMPRGTADQC

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_4|426_bp
atggttgatcgagccgatctgcaacgaggcgttcgttcggagtcggagatcgccttgcgg
tcagcgggggttaggggtccctgggcgctgtgctgccctcggcccagagctgcgcctggc
ggctcggccgcgcgagccagggcgaacaggacgcagtgcagggacgcgcagggccagcga
ggggagctgcagggatcttgcagagttggagtggtacctagccgttctattgatgtctgc
ccttataaaatgcatttttctgcttgtgggatctatacaaatgctagctcaattcctgat
acagagtcacagaatcacacagctttagaggaagaaaccaccttagagcaagtcccatgc
cctaattccaccaaaagtaaactcaaggaccaagagatgccccgaggcacagcagatcag
tgctga

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_5|115_aa
MAFKRSLAEFSVGEAHQAAAITAGPAYGSHLRGAGGQIGARWGGGGCRGLGEWRDARCQP
RRGIVRAPERQPYWRPRTPPRSCPLSCGNLRRRAEHAQCRCCPCGRPGHPSPRAA

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_5|348_bp
atggccttcaagcggagcttagcagagttctcggtcggagaagcgcaccaggcagcggca
ataactgcgggcccggcgtacggcagccatcttcgcggggcagggggccagatcggggcg
cgctggggtggcggcggctgccggggactcggggagtggagggacgcccgttgccagccg
aggcgggggattgtgcgagcaccggagcgtcagccctactggagaccccggacgccgccg
cggagctgccccctcagctgcggaaacctgcgccgacgcgccgagcatgcgcagtgccgg
tgctgcccgtgtgggcggcccggccacccatccccgcgggctgcctag

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_6|469_aa
MFRAQWMFELAPGVSSSNLENRPCRAARGSLQKTSADTKGKQEQAKEEKGCHLFTIRSKF
VFIISHQIIGITMMTYLLSPLNFYFEIITGPQARELFLKAVEEEQNGALYEAIKFYRRAM
QLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPEL
ESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVW
GRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIR
FFPDGHVMMLTTPEEPQSIVPRLRTRNTRNHLTINTDIFVVSLYKKQIRVFMWGYSYVPV
VTRGSTNSSGYIILVTLLTRIWTQVMSSEFLEDGVTREVGRTHLATKTAFPPTNPAQMSK
SSLAVTPPCGLHGRDRWTKAMTVKVPSGVKATYSLAAPQPIAFTPILLH

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_6|1410_bp
atgttccgagctcagtggatgtttgaacttgctccaggtgtaagctctagcaatttagaa
aatcgaccttgcagagcagcaagaggctctctccagaaaacatcggcagataccaaagga
aaacaagaacaggcaaaagaagaaaaaggctgccatctttttaccatcagatccaagttt
gtgtttataattagtcatcaaataattggcattaccatgatgacttaccttctatctcct
cttaatttttattttgaaataattacaggtccacaggctcgagaactcttcctaaaagca
gtagaagaagaacaaaatggagctctctatgaagccatcaagttttatcgtagggctatg
caacttgtacctgatatagagttcaagattacttatacccggtctccagatggtgatggc
gttggaaacagctacattgaagataatgatgatgacagcaaaatggcagatctcttgtcc
tacttccagcagcaactcacatttcaggagtctgtgcttaaactgtgtcagcctgagctt
gagagcagtcagattcacatatcagtgctgccaatggaggtcctgatgtacatcttccga
tgggtggtgtctagtgacttggacctcagatcattggagcagttgtcgctggtgtgcaga
ggattctacatctgtgccagagaccctgaaatatggcgtctggcctgcttgaaagtttgg
ggcagaagctgtattaaacttgttccgtacacgtcctggagagagatgtttttagaacgg
cctcgtgttcggtttgatggcgtgtatatcagtaaaaccacatatattcgtcaaggggaa
cagtctcttgatggtttctatagagcctggcaccaagtggaatattacaggtacataaga
ttctttcctgatggccatgtgatgatgttgacaacccctgaagagcctcagtccattgtt
ccacgtttaagaactaggaataccagaaaccacttgactataaatacagatattttcgtc
gtgtccctgtacaagaagcagatcagagttttcatgtggggctacagctatgttccagtg
gtcaccagaggttcaacaaactcatctggatacatcattcttgtcacattacttacaagg
atctggacacaggtcatgagctcagagtttttagaagatggtgtcactagggaggttgga
aggacccatttggccacaaagacagcatttccacctaccaacccagcccagatgtctaag
tccagcttagctgtgacccctccttgtggactccatggcagagacaggtggacaaaagca
atgactgttaaggtgccatctggggtcaaggccacatacagtctggcagcacctcagcca
attgccttcacccctatcctactccattga

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_7|458_aa
MRLSKPFAFSPSHLCLLSLILESLDLPDRKQSPGPRCLSGPIQLYQEPLRTKFSSISEGS
RIGENLGWPDLIMEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSE
DKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQ
QRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRA
MKKVNTAPSSVSLSLKGSTETRSYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGD
LLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFY
QQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH
QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_7|1377_bp
atgaggctttccaagccttttgccttctcgccttctcatctctgcctcctaagcctcatc
cttgaaagtctggaccttcctgacagaaaacaatctcctggtccaaggtgcttgagtggg
ccgatccagctatatcaagaacctttgagaacaaaattctcaagcatttctgaggggagt
cgaataggtgaaaaccttggctggcctgaccttatcatggaacctgacgactttgattct
gaagacaaagagatattaagctgggatattaatgatgtgaaactgccacagaacgtgaaa
aaaaccgactggttccaggagtggccagattcctatgccaaacacatctacagctcggag
gacaagaatgcgcagcggcacctgagcagctgggccatgcgcaataccaacaaccacaac
tcccgcatcctcaagaagtcctgcctgggtgtggtggtgtgcggccgcgactgtctcgca
gaggaggggcgcaagatctacctgagacctgccatctgtgacaaggcccggcagaagcag
cagcggaaacgctgtcccaactgtgacgggcctctgaagctcatcccttgccgaggtcat
gggggcttcccggtcaccaacttctggaggcacgacggacgctttatatttttccagtca
aagggagagcatgatcatccaaaaccagaaaccaagttagaagctgaggcaagaagagcc
atgaagaaagtgaacacagcaccttcctccgtctcattgagcctgaaggggagcacagag
accaggagttatggtctgggaggaatcacagatctgactgaccagacttccactgtggac
cccatgaagctctatgaaaagcgcaaattgtccagtagcagaacctacagtagtggagac
ctgcttcctccttctgcctccggagtctactctgatcatggcgatctacaagcgtggagt
aaaaatgctgctttggggagaaatcatcttgctgacaactgttattccaattatcctttt
cctctgaccagctggccttgcagcttctctccttcccaaaactcttcagaacccttttac
cagcagcttccattggagccacctgcagccaaaactggctgtcccccattatggccaaat
ccagcgggtaatctttatgaagagaaagtacatgtggattttaacagctacgtccagtct
cctgcataccattcacctcaagaagacccctttctcttcacctacgcctctcatcctcat
cagcaatattcactgccaagcaagagcagcaaatgggattttgaggaagaaatgacatac
ttgggtttggatcactgcaacaatgatatgcttctgaacctgtgtcctttgagatga

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_8|132_aa
MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAALRGVCRAQGS
CVREDVLDSEPGEASVGVLTNSSSKRGGSGSFQPRIEASMASGNWVSRPRVFWSNQEEIK
CLGLHFQQLELS

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_8|399_bp
atgtccggcctcgaaggcgggaagaagaagcccctgaaacaaccaaagaagcaagccaag
gagatggacgaggaacaagaggcctccaaacgggaaaaaaaaggagaagcagaagaaacc
caggagctaaaagtgaaggccaaggctgccctgaggggcgtgtgcagagctcagggctcc
tgtgtgagggaggacgttcttgactctgagccaggtgaagccagtgtgggggtgcttaca
aattcgagcagtaagagaggaggttctgggagcttccagcccaggatagaagcctccatg
gcttctggcaactgggtgtccagacccagggtgttctggtcaaatcaagaggagatcaaa
tgtctaggccttcactttcagcagctggaactgagttga

>gi568815592f:52971024_53197827|GENSCAN_predicted_peptide_9|65_aa
DQERHVGDLGNVMAGKDGVANVSTEDSLSEDHSISGCTRVIQKKQMSWAKVAMKKAQRRE
TLEVI

>gi568815592f:52971024_53197827|GENSCAN_predicted_CDS_9|198_bp
gatcaagagaggcatgtcggagacctgggcaatgtgatggctggcaaagatggtgtggcc
aatgtgtctactgaagattcactttcagaagatcattccatcagtggctgtacaagggtg
atccagaagaaacagatgtcttgggcaaaggttgcaatgaagaaagcacaaagacgagaa
acactggaagtcatttag