GENSCAN 1.0	Date run:  6-Nov-116	Time: 04:53:56

Sequence gi568815587f:107828569_108062369 : 233801 bp : 42.97% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7188   7322  135  2  0   58   97   131 0.494  10.84
 1.02 Term +  12029  12193  165  1  0   47   38   113 0.665  -0.87
 1.03 PlyA +  13024  13029    6                               1.05

 2.04 PlyA -  13800  13795    6                               1.05
 2.03 Term -  20736  20635  102  0  0   69   39    66 0.141  -2.90
 2.02 Intr -  30386  29727  660  2  0   74   94   367 0.400  26.97
 2.01 Init -  49567  49487   81  1  0   59   55    84 0.072   1.22
 2.00 Prom -  78162  78123   40                              -2.05

 3.00 Prom +  79292  79331   40                              -8.55
 3.01 Init +  79852  79981  130  0  1   84   44   240 0.546  19.73
 3.02 Term +  80084  80196  113  0  2   71   32   193 0.940   9.74
 3.03 PlyA +  80214  80219    6                               1.05

 4.00 Prom +  80583  80622   40                              -9.55
 4.01 Init +  82364  82374   11  1  2   68   77    15 0.111  -2.14
 4.02 Term +  88308  88617  310  0  1   43   55   300 0.722  15.75
 4.03 PlyA +  89691  89696    6                               1.05

 5.08 PlyA -  89716  89711    6                               1.05
 5.07 Term -  95260  95036  225  1  0  -13   39   407 0.984  21.50
 5.06 Intr - 106614 106537   78  0  0   88   61    73 0.002   3.43
 5.05 Intr - 115089 115071   19  2  1   81   94   -25 0.000  -6.90
 5.04 Intr - 125602 125300  303  0  0    1   92   162 0.142   2.68
 5.03 Intr - 126109 125868  242  1  2   61   51   178 0.034   6.83
 5.02 Intr - 145230 145042  189  0  0   38   95   127 0.106   7.26
 5.01 Init - 146165 146025  141  2  0   66   67    80 0.118   3.88
 5.00 Prom - 146947 146908   40                             -11.24

 6.00 Prom + 148214 148253   40                              -4.45
 6.01 Sngl + 150906 151499  594  2  0   58   49   222 0.817  11.24
 6.02 PlyA + 151747 151752    6                              -1.75

 7.02 PlyA - 152493 152488    6                               1.05
 7.01 Sngl - 154343 153915  429  2  0   53   48   331 0.972  21.63
 7.00 Prom - 154387 154348   40                             -18.07

 8.00 Prom + 154409 154448   40                              -8.65
 8.01 Init + 155121 155259  139  2  1   85  108   112 0.600  13.25
 8.02 Intr + 155831 156086  256  0  1   61   68   260 0.983  16.88
 8.03 Term + 156120 156600  481  0  1  -30   42   274 0.976   4.28
 8.04 PlyA + 160502 160507    6                               1.05

 9.04 PlyA - 160684 160679    6                               1.05
 9.03 Term - 161364 161243  122  1  2   39   47   187 0.941   7.36
 9.02 Intr - 164140 164077   64  1  1   79   67    62 0.165   0.57
 9.01 Init - 171858 171658  201  0  0   56   37   199 0.862  10.52
 9.00 Prom - 176522 176483   40                              -4.05

10.00 Prom + 178418 178457   40                              -5.95
10.01 Init + 178927 179004   78  0  0   64   89    68 0.987   5.61
10.02 Intr + 180410 180576  167  1  2   78   17   186 0.528   8.34
10.03 Intr + 180823 180962  140  1  2   28   25   141 0.054   0.99
10.04 Term + 191700 191836  137  1  2  -17   44   219 0.123   4.20
10.05 PlyA + 191881 191886    6                               1.05

11.00 Prom + 203126 203165   40                              -4.15
11.01 Init + 203654 203707   54  1  0   45  109    10 0.861   0.14
11.02 Intr + 205234 205343  110  0  2   91   88    89 0.870   7.36
11.03 Intr + 217702 217801  100  1  1   72   92    56 0.776   3.59
11.04 Intr + 221322 221498  177  2  0   76  116    95 0.997  10.29
11.05 Intr + 224092 224233  142  0  1   82   80    53 0.971   2.91
11.06 Intr + 226079 226224  146  0  2   96   92    30 0.981   3.28
11.07 Intr + 226307 226387   81  1  0   88   92   114 0.882  10.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  96850  96836   15  1  0   80   58     5 0.886  -3.03
S.002 Init + 100001 100227  227  1  2   81   91   189 0.996  16.49
S.003 Term + 106528 106625   98  2  2   98   38    76 0.812   0.75
S.004 Term + 117368 117508  141  1  0   86   43   128 0.924   5.05
S.005 Term + 133378 133804  427  1  1  104   38   261 0.975  16.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_1|99_aa
ILTLCQAMGAEKRSPCPHGIHNTAVKKNSKATIPNVVRVNKEMYKMKIINWHAAGRMKPT
ANAMHKGLHRILLWFGLLAPAASLVSLWFGSVTLHDSVK

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_1|300_bp
atcctaacactgtgtcaagctatgggagcagagaaacggagcccctgtcctcatggaatt
cacaatacagcagtgaagaagaatagtaaagcaacaattccaaatgtggtgagggtgaac
aaagagatgtacaagatgaagataatcaactggcatgcagctggaagaatgaagccaaca
gcaaacgcaatgcacaaaggcttacacagaatcctgctgtggtttggactcctggctcct
gctgcttctctggtctctctgtggtttggcagcgtaaccctccatgattctgtaaagtaa

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_2|280_aa
MRLRGQAPWLTPVIPALWEARAGRSPEGLTVNDWSLKEPSGGARGTRASERGRERRARAE
PQPAAQAPPPVFRDPALRGFWAPETRKGADGGRLASGPRRPRAPRGGSGGRVLQPAAQDK
RQTLHLVSGRGVLQLRWGVGAAAGPARTWTRSTLSEAPSREAEVAAARTSVRGSTRTPGM
VRFTWRREALGASPSAPVSKSWRCILEDLGGNPPCGTIRSVLWGVPRWRDEVPGDAVKEE
CPPRAGQTVVIASIHASIYPRPQSSRYTEVRVMPNKTKEY

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_2|843_bp
atgaggctccgaggccaggcgccgtggctcacaccggtaatcccagcactctgggaggcc
agagcaggcagatcacctgagggcttgacagttaatgattggtcgctgaaggagccgagc
ggaggagcgagagggacgcgagcaagcgagcgagggagggagcgcagggccagagcggag
ccccagccggccgcacaggcaccgcctcccgtcttccgggacccggcacttcgggggttt
tgggcgccggagacgcgcaagggcgccgatggaggcagactcgccagcgggccccggcgc
cccagagcccctcgcggagggagcggcggccgagttctccagcctgctgcgcaggataaa
aggcaaactcttcacctggtgagtggaaggggcgtgctgcagctccgctggggcgtgggg
gcggctgcgggccctgcgcgcacgtggacaaggagcacactctctgaggcccccagcagg
gaggcagaggtggcggccgcacggacttcggttcggggctcaacacgcacaccaggtatg
gtgcgcttcacctggcgtcgggaagcacttggtgcgtctccctcggctcccgtttcgaaa
tcgtggcgatgtattttggaggatttggggggaaacccaccctgtggcactattaggtcg
gtcctctggggcgttccgcggtggagggacgaggtccccggggatgctgtgaaggaggag
tgcccacctcgggctgggcagactgttgtaatagcttccatccatgcctccatctatccc
cgaccccaatcatctcgctacacagaagtcagagtgatgcctaataaaacgaaagagtat
taa

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_3|80_aa
MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEEDYDRLNKVISSAAPAAGSAPAAAEEK
KDEKEESEESDDDMGFGLFD

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_3|243_bp
atgcgctacgtcgcctcctacctgctggctgccctcgggggtaactcctcccccagcgcc
aaggacatcaagaagatcttggacagcgtgggcatcgaggaggattacgaccggctcaac
aaggttatcagctctgcagcccctgctgctggttccgcccctgctgcagcagaggagaag
aaagatgagaaggaggagtctgaggagtcggacgatgacatgggatttggcctctttgat
taa

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_4|106_aa
MLASPHVIRFFQYTRARSRDTESPCDKTESLIELLNTSHLQRAKLQEHTVTQAHWGFESC
KHLTLDAAVGSEPKNTPQYLHPLHAPPRGLSSRGLKKRATSLLHAL

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_4|321_bp
atgttggccagcccacatgtgatccgatttttccagtacactagggcaagaagccgggat
acagaaagcccttgtgataagacagagagtctaattgagctgcttaacacaagccacctg
cagagagcaaaactgcaagagcacactgtaacacaggcccactggggcttcgagagctgt
aaacacttaaccctagatgctgctgtggggtcggagcccaaaaacactccccagtacctg
catcctctacatgctccccctagaggtttgagcagccgaggactgaagaagcgagccaca
tccctgttgcatgccctgtga

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_5|398_aa
MLDEGEGNPEWIVEEKMMSVSCGLETSCRRSFLYFVPLTFLFFLSFPESSTQESTSCPLQ
INYIGPFPSWKGQRSVLSEIDTYSGCGFTFALRNCFGSSTILELAECLIQRKKIQVCLTN
GSKQYAGISKPRSMENLKVSGKVPFVESLVLHLTVYFFQRKSWRDVGKDPHQVMSRREGF
GMLGKKQDRGCSYRHPEYCTLLWGTIIEGTQICPHCNIFNLDLGHASTTIHEHADCLIHS
HGILHIATDQVIHLTVVEIGKWNDAMGFIDHITPLSSRGVWPYKTVKWVIKSAWHIFKTC
PEFFLVQDPRTLSWGLDRDPFPVTKKKKRRRGRRGSGSRRRRRRRKKKKKKKRRRKRRKR
RKKKKRKKKKKKKEEEEEEEEEEEEDEGKGKEKEVISQ

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_5|1197_bp
atgctagatgagggtgaggggaatccagaatggattgtagaggagaagatgatgagtgtc
agttgtggccttgagactagttgccgaagaagcttcttgtattttgttccactaaccttc
ctcttcttcttaagtttccctgaatcctccacacaggaatcaaccagctgtccattgcag
attaattacattggaccttttccatcatggaaggggcagagatctgttcttagtgaaata
gatacatattctggatgtggttttacctttgctcttcgcaattgttttggcagcagtacc
atccttgaacttgcagaatgccttatccagaggaaaaaaattcaagtctgtcttacaaat
ggctctaaacaatatgctggcatcagtaagccacgctcaatggagaacttgaaggtcagt
ggaaaagttccatttgtggaatctctagtgctacatctcactgtttactttttccagagg
aagagttggagagacgtaggtaaagatccacaccaagtcatgagcagacgcgaagggttt
ggcatgctgggtaaaaaacaagatcggggctgtagctaccgacatcctgaatattgtacc
ttactctgggggaccatcattgaggggacacagatatgtcctcattgtaatatatttaat
ctggatttaggccatgctagtaccaccatccatgaacatgcagactgccttatacatagt
catggtatcctacacattgccacagatcaagtaattcacttaacagtggtggagataggg
aaatggaatgatgccatgggattcattgatcatatcacaccactatcatctagaggcgtc
tggccctataaaactgtgaaatgggttattaagagtgcctggcatatatttaagacttgc
cctgaattctttcttgtgcaagatccaagaaccctctcttggggtctggatcgggacccc
tttcctgtaacaaagaagaaaaaaagaagaagaggaagaagaggaagtggaagtagaaga
agaagaagaagaagaaagaagaagaagaagaagaagaggaggaggaagaggaggaagagg
aggaagaagaagaagaggaagaagaagaagaagaagaaggaggaggaggaggaggaggag
gaagaggaggaggaggacgaggggaaggggaaggagaaggaagttataagccaatag

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_6|197_aa
MPDLPSFNVEEGIQRLREIVMVEWISHLKPTHLSWEGPEDIPLTRPSQNIFVRAAPASLK
SPVIALLYMSDLMVRTAVTQLQNLNTMGIIGSQGGRDRVAPLNHQRQSGHGYHNGQQRES
GNQNSLTGVELWHWLINHVVSRSEVDRKPTTFLLNLYKQKTSRSNGRKTSLNYKNRESRP
LNQFPDLSQFTDPEPLE

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_6|594_bp
atgcctgatctcccttcgtttaatgtagaggaagggatccaaaggcttagggagattgtg
atggtggaatggattagtcacttgaaacctactcatctcagctgggagggtccagaagat
atacccttgaccaggccctcgcaaaatatatttgtgagggcagcacctgcatctttgaag
agccctgtaattgctcttctctatatgtcagatctaatggtgagaactgcagtcactcaa
ctacaaaatttaaatacaatgggaataattggatcccaagggggcagggaccgagtggca
ccactcaaccatcaaaggcaaagtgggcatggctaccataatggacagcagagggaaagt
ggcaatcagaatagtctgactggtgtagagctctggcactggctaattaatcatgttgtt
tctagaagtgaagttgataggaagcctactaccttcctacttaatttatacaagcagaaa
acttctaggtcgaatggacgaaagactagtttgaattataaaaacagagaatcacggccc
ctcaatcaattcccagacttgagccagtttacagacccagaaccccttgaatga

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_7|142_aa
MAYLIKEIDVVAKGLPHCLQVVAAVAVLVSEAVKMIQGRDLTVWTSHDVNGILTAKGDLW
LSDNCLLKYQALLLEGPVMWLHTCATLNPATFLPDNEKKIEHNCQQVIAQTYATRGDLLE
VPLTDPDLNLYTDESSFVEKGI

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_7|429_bp
atggcatacctgattaaggaaattgatgtagtggcaaagggtttgcctcactgtttacag
gtagtggcggcagtagcagtcttagtatctgaagcagttaaaatgatacagggaagagat
cttactgtgtggacatctcatgatgtcaacggcatactcactgctaaaggagacttgtgg
ctgtcagacaactgtttacttaaatatcaggctctattacttgaagggccagtgatgtgg
ctgcacacttgtgcaactcttaacccagccacatttcttccagacaatgaaaaaaagata
gaacataactgtcaacaggtgattgctcaaacctatgccactcgaggggaccttctagag
gttcccttgactgatcctgacctcaacttgtatactgatgaaagttcctttgttgaaaaa
ggaatttga

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_8|291_aa
MRPELPIINWVLSGPSSHKVGYAQQHSIIKWKWYIHDQFRAGPEGTTTPVIAQWAHEQSG
HGGRHGGYAWTQQHGLPLTKADLAMATAECPICQQQKPTLSPRYGTIPQGDQPATWWQVD
YIGPLASRKGQRYGFAYLARNVSAKTTIHGLMECLIHHHGIPHIIASDQGTHFVAKEVRQ
WAHAHGIHWFHHVAYHPEAGGLTEWWNGLLKSQLQRQLGDNTLQDWGKVPQKAMYALIQC
PIYGIVSPIARIHRSRNQGVKVEMAPFTITPSDPLAKCLLPVLVTLRSAGL

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_8|876_bp
atgcgacctgaactgcctatcataaactgggtgctttctggcccatctagccataaagtg
ggttatgcacagcagcattccatcatcaaatggaagtggtacatacatgatcagtttcga
gcaggtcctgaaggcacaaccacccctgtcattgcccaatgggcccatgaacaaagtggc
catggtggcaggcatggaggttatgcatggactcagcaacatggacttccactcaccaag
gctgacctggctatggccactgctgagtgcccaatttgccagcagcagaaaccaacactg
agccctcgatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgat
tatattggacctcttgcatcacggaaagggcagagatatgggtttgcctatcttgcacgc
aatgtttctgccaagactaccatacatggactcatggaatgccttatccaccatcatggt
attccacacatcattgcctctgaccaaggcactcactttgtggctaaagaagtgcggcag
tgggctcacgctcatggaattcactggtttcaccatgttgcctatcatcctgaagcaggt
ggattgacagaatggtggaatggccttttgaagtcacaattacaacgccaactaggtgac
aatactttgcaggactggggcaaagttccccagaaggccatgtatgctctgattcagtgt
ccaatatatggtattgtttctcccatagccaggattcacaggtccaggaatcaaggggtg
aaagtggaaatggcaccattcaccatcacccctagcgatccactagcaaaatgtttgctt
cctgttcttgtgacattacgttctgctggcctatag

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_9|128_aa
MVSENKIKENSDQNAQGMLLLSCEVDPSLLNLHFTFPVAASDPGSSVPLSTTVDSLPQCT
LTLHMGQAMDQYQSTAQGLGTPGLRDMAEEGIVILRGDSSICVIVPEDLPVGPDVEVEDS
DIDDPDPV

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_9|387_bp
atggtttcagagaataaaatcaaagaaaacagcgaccaaaatgctcagggcatgcttctc
ttgtcctgtgaggtggacccttcacttctgaaccttcacttcacctttcctgtggctgcc
tccgaccctggttcctctgtgcccctgtctacaactgtggactcgctcccacaatgtacc
ctgactcttcacatggggcaggccatggaccagtaccagtccacggcccaggggttgggc
acccctggactaagggacatggcagaagaaggcattgtcatcctaagaggtgatagctct
atatgtgttattgtccctgaagaccttcctgtgggaccggatgtggaggtggaagacagt
gatattgatgatcctgatcctgtgtag

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_10|173_aa
MADNRWGQWNGELIEVRVVAVVFPEQVAAAGATTKANPKESGRLVESMLPLPSQVGSRYL
LSIRRSGLPERVHEVFRVGKLRLGFTVWPPGSALWERHGSGSAAKCGSVQGLSTGREAAV
AAGEYRNAGGIPEEGVVTIGDDSPIQVSVPEDFPVGQDVKVEDSDDDPDPVEA

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_10|522_bp
atggcagataacaggtggggtcaatggaatggagaacttattgaagtcagagttgtagca
gtggtgtttccagaacaagtggccgcggcgggtgcaaccacaaaggctaatccgaaggag
tcggggaggctcgtggagtcgatgcttcctcttccaagtcaggtcggctcccgttacctt
ctcagcattcgccgttccggtcttcctgagcgcgtgcatgaggtctttcgcgtggggaag
ctccgcttgggttttactgtgtggccgccgggttcggctctttgggaaaggcacggctca
ggttcagctgcgaagtgtgggagtgttcaggggttgtccactggcagggaagccgcggtg
gcagccggcgagtaccggaacgcgggaggcattccagaagaaggcgttgttaccatagga
gatgacagccccattcaggttagcgttcccgaagactttccagtgggacaagatgtgaag
gttgaagacagtgatgatgatcctgaccctgtggaggcctag

>gi568815587f:107828569_108062369|GENSCAN_predicted_peptide_11|270_aa
MVLVQWLTAITSAFWETQNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAV
CLWDDKGPAKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKP
FCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGE
AFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNY
MKYADAKLKEEEKRALRYLETRRECNSVEA

>gi568815587f:107828569_108062369|GENSCAN_predicted_CDS_11|810_bp
atggtcctagttcagtggcttactgctataacctcagcattttgggagactcagaataaa
ggttctcttcagtttgaagacaaatgggattttatgcgcccgattgttttgaagctttta
cgccaggaatctgttacaaaacagcagtggtttgatctgttttcggatgtgcatgcagtc
tgtctttgggatgataaaggcccagcaaaaattcatcaggctttaaaagaagatattctt
gagtttattaagcaagcacaggcacgagtactgagccatcaagatgatacggctttgcta
aaagcatatattgttgaatggcgaaagttctttacacaatgtgatattttaccaaaacct
ttttgtcaactagagattactttaatgggtaaacagggcagcaataaaaaatcaaatgtg
gaagacagtattgttcgaaagcttatgcttgatacatggaatgagtcaatcttttcaaac
ataaaaaacagactccaagatagtgcaatgaagctggtacatgctgagagattgggagaa
gcttttgattctcagctggttattggagtaagagaatcctatgttaacctttgttctaat
cctgaggataaacttcaaatttatagggacaattttgagaaggcatacttggattcaaca
gagagattttatagaacacaagcaccctcgtatttacaacaaaatggtgtacagaattat
atgaaatatgcagatgctaaattaaaagaagaagaaaaacgagcactacgttatttagaa
acaagacgagaatgtaactccgttgaagca