Result of FASTA (omim) for pF1KE0530
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0530, 154 aa
  1>>>pF1KE0530 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8810+/-0.00031; mu= 14.7397+/- 0.019
 mean_var=66.9156+/-13.243, 0's: 0 Z-trim(115.9): 20  B-trim: 0 in 0/51
 Lambda= 0.156787
 statistics sampled from 26703 (26723) to 26703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.313), width:  16
 Scan time:  4.710

The best scores are:                                      opt bits E(85289)
XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 1030 241.1 5.2e-64
NP_005359 (OMIM: 160000) myoglobin [Homo sapiens]  ( 154) 1030 241.1 5.2e-64
NP_976312 (OMIM: 160000) myoglobin [Homo sapiens]  ( 154) 1030 241.1 5.2e-64
NP_976311 (OMIM: 160000) myoglobin [Homo sapiens]  ( 154) 1030 241.1 5.2e-64
NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190)  253 65.4   5e-11
XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin  ( 202)  253 65.5 5.2e-11
NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142)  230 60.1 1.5e-09
XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin  ( 142)  230 60.1 1.5e-09
XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin  ( 154)  230 60.2 1.6e-09
NP_000175 (OMIM: 141749,142250,613977) hemoglobin  ( 147)  186 50.2 1.5e-06
NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147)  185 50.0 1.7e-06
NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142)  180 48.8 3.7e-06
NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142)  180 48.8 3.7e-06
NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142)  176 47.9   7e-06
NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147)  171 46.8 1.6e-05
NP_000510 (OMIM: 142000) hemoglobin subunit delta  ( 147)  166 45.7 3.4e-05
NP_001003938 (OMIM: 609639) hemoglobin subunit mu  ( 141)  163 45.0 5.3e-05
NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147)  163 45.0 5.5e-05
XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin  ( 137)  151 42.3 0.00034


>>XP_005261662 (OMIM: 160000) PREDICTED: myoglobin isofo  (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1270.1  bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
               70        80        90       100       110       120

              130       140       150    
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       ::::::::::::::::::::::::::::::::::
XP_005 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
              130       140       150    

>>NP_005359 (OMIM: 160000) myoglobin [Homo sapiens]       (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1270.1  bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
               70        80        90       100       110       120

              130       140       150    
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       ::::::::::::::::::::::::::::::::::
NP_005 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
              130       140       150    

>>NP_976312 (OMIM: 160000) myoglobin [Homo sapiens]       (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1270.1  bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
               70        80        90       100       110       120

              130       140       150    
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       ::::::::::::::::::::::::::::::::::
NP_976 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
              130       140       150    

>>NP_976311 (OMIM: 160000) myoglobin [Homo sapiens]       (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1270.1  bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
               70        80        90       100       110       120

              130       140       150    
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       ::::::::::::::::::::::::::::::::::
NP_976 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
              130       140       150    

>>NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens]      (190 aa)
 initn: 238 init1: 126 opt: 253  Z-score: 319.0  bits: 65.4 E(85289): 5e-11
Smith-Waterman score: 253; 28.6% identity (64.3% similar) in 154 aa overlap (3-152:19-171)

                               10        20        30        40    
pF1KE0                 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
                         ::..: . :  .:... :.    :  .:.:.: . : . . :
NP_599 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
               10        20        30        40        50        60

           50        60        70        80        90           100
pF1KE0 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPL----AQSHATKHKI
       ..:::...  ::. : .:.::.  :. ::. ....  :   ... .    ...:: :::.
NP_599 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENL-HDPDKVSSVLALVGKAHALKHKV
               70        80        90        100       110         

              110       120       130       140       150          
pF1KE0 PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG      
          :....:  :..:.  .  .::  ..: :  :   :. . ... :::.:.        
NP_599 EPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNAT
     120       130       140       150       160       170         

NP_599 TPPATLPSSGP
     180       190

>>XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin isof  (202 aa)
 initn: 238 init1: 126 opt: 253  Z-score: 318.6  bits: 65.5 E(85289): 5.2e-11
Smith-Waterman score: 253; 28.6% identity (64.3% similar) in 154 aa overlap (3-152:19-171)

                               10        20        30        40    
pF1KE0                 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
                         ::..: . :  .:... :.    :  .:.:.: . : . . :
XP_005 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
               10        20        30        40        50        60

           50        60        70        80        90           100
pF1KE0 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPL----AQSHATKHKI
       ..:::...  ::. : .:.::.  :. ::. ....  :   ... .    ...:: :::.
XP_005 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENL-HDPDKVSSVLALVGKAHALKHKV
               70        80        90        100       110         

              110       120       130       140       150          
pF1KE0 PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG      
          :....:  :..:.  .  .::  ..: :  :   :. . ... :::.:.        
XP_005 EPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNAT
     120       130       140       150       160       170         

XP_005 THSSWRRSPEGSWGRQASCPSCC
     180       190       200  

>>NP_005323 (OMIM: 142310) hemoglobin subunit zeta [Homo  (142 aa)
 initn: 167 init1: 123 opt: 230  Z-score: 292.6  bits: 60.1 E(85289): 1.5e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:1-142)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       :.:.  :  .....:.:. ..    : :.: ::: .::.:   : .:      :   .: 
NP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA
               10        20        30        40              50    

               70        80        90       100        110         
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEFISECIIQVLQSK
       .:. ::. :..:.:  .:.     . .. :.. ::   .. ::.. ...:.:.. .: ..
NP_005 QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KLLSHCLLVTLAAR
           60        70        80        90        100       110   

     120       130       140       150    
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
        :.:: :.:..: .: : .  . .. .:.      
NP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR      
           120       130       140        

>>XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin subu  (142 aa)
 initn: 167 init1: 123 opt: 230  Z-score: 292.6  bits: 60.1 E(85289): 1.5e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:1-142)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       :.:.  :  .....:.:. ..    : :.: ::: .::.:   : .:      :   .: 
XP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA
               10        20        30        40              50    

               70        80        90       100        110         
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEFISECIIQVLQSK
       .:. ::. :..:.:  .:.     . .. :.. ::   .. ::.. ...:.:.. .: ..
XP_005 QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KLLSHCLLVTLAAR
           60        70        80        90        100       110   

     120       130       140       150    
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
        :.:: :.:..: .: : .  . .. .:.      
XP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR      
           120       130       140        

>>XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin subu  (154 aa)
 initn: 167 init1: 123 opt: 230  Z-score: 292.1  bits: 60.2 E(85289): 1.6e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:13-154)

                           10        20        30        40        
pF1KE0             MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFK
                   :.:.  :  .....:.:. ..    : :.: ::: .::.:   : .: 
XP_005 MTCFFDAAHPAAMSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-
               10        20        30        40        50          

       50        60        70        80        90       100        
pF1KE0 HLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEF
            :   .: .:. ::. :..:.:  .:.     . .. :.. ::   .. ::.. ..
XP_005 -----DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KL
           60        70        80        90       100       110    

       110       120       130       140       150    
pF1KE0 ISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       .:.:.. .: .. :.:: :.:..: .: : .  . .. .:.      
XP_005 LSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR      
           120       130       140       150          

>>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu  (147 aa)
 initn: 141 init1: 141 opt: 186  Z-score: 238.6  bits: 50.2 E(85289): 1.5e-06
Smith-Waterman score: 186; 25.0% identity (59.5% similar) in 148 aa overlap (1-147:1-146)

                10        20        30        40        50         
pF1KE0 MG-LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKAS
       :: ... .   . ..::::  ..   : :.: ::.  .: : . ::.: .:.: . . ..
NP_000 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
               10          20        30        40        50        

      60        70        80        90       100       110         
pF1KE0 EDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSK
         .: ::  :::.::  .:.    .. .  :.. :  : ..  . ...... .. ::  .
NP_000 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
       60        70        80        90       100       110        

     120       130       140       150    
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
          .:  ..:.. .: .    . ..: :       
NP_000 FGKEFTPEVQASWQKMVTGVASALSSRYH      
      120       130       140             




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:30:19 2016 done: Thu Nov  3 01:30:20 2016
 Total Scan time:  4.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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