FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0417, 254 aa
  1>>>pF1KE0417 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1830+/-0.000822; mu= 3.6986+/- 0.049
 mean_var=198.6121+/-40.033, 0's: 0 Z-trim(114.4): 19  B-trim: 0 in 0/53
 Lambda= 0.091006
 statistics sampled from 14985 (14996) to 14985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.461), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS42168.1 FAM192A gene_id:80011|Hs108|chr16      ( 254) 1662 229.7 1.5e-60


>>CCDS42168.1 FAM192A gene_id:80011|Hs108|chr16           (254 aa)
 initn: 1662 init1: 1662 opt: 1662  Z-score: 1200.6  bits: 229.7 E(32554): 1.5e-60
Smith-Waterman score: 1662; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE0 MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NQEPSSCKSLGNTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NQEPSSCKSLGNTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKI
              190       200       210       220       230       240

              250    
pF1KE0 VSSIFRTNTFLEAP
       ::::::::::::::
CCDS42 VSSIFRTNTFLEAP
              250    




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:24:54 2016 done: Thu Nov  3 11:24:54 2016
 Total Scan time:  2.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]