GENSCAN 1.0 Date run: 3-Nov-116 Time: 11:36:06 Sequence gi568815597f:25240487_25460702 : 220216 bp : 45.19% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.05 PlyA - 1126 1121 6 1.05 1.04 Term - 2219 2103 117 2 0 83 42 37 0.745 -2.86 1.03 Intr - 3147 3064 84 0 0 49 101 87 0.957 6.12 1.02 Intr - 4815 4664 152 1 2 118 100 121 0.996 16.18 1.01 Init - 6477 5958 520 0 1 69 98 448 0.921 38.93 1.00 Prom - 13194 13155 40 -4.96 2.00 Prom + 22014 22053 40 -3.26 2.01 Init + 32062 32209 148 0 1 60 100 94 0.473 6.17 2.02 Intr + 43422 43481 60 1 0 111 100 -2 0.237 2.01 2.03 Intr + 44087 44273 187 0 1 27 72 247 0.366 15.75 2.04 Intr + 50155 50305 151 1 1 100 92 143 0.933 16.06 2.05 Intr + 51175 51306 132 0 0 0 116 86 0.884 3.44 2.06 Intr + 60460 60607 148 0 1 80 82 134 0.679 11.81 2.07 Intr + 61034 61200 167 0 2 84 105 126 0.974 13.58 2.08 Intr + 62836 62973 138 0 0 95 111 49 0.996 8.56 2.09 Intr + 66110 66243 134 1 2 65 34 204 0.970 12.14 2.10 Intr + 76514 76593 80 2 2 122 82 68 0.881 8.79 2.11 Intr + 111140 111207 68 0 2 78 99 87 0.555 7.42 2.12 Term + 121569 121610 42 2 0 113 41 24 0.090 -2.64 2.13 PlyA + 121761 121766 6 1.05 3.12 PlyA - 121845 121840 6 1.05 3.11 Term - 128950 128805 146 2 2 78 47 28 0.211 -4.23 3.10 Intr - 134942 134863 80 1 2 122 82 63 0.896 8.29 3.09 Intr - 145358 145225 134 2 2 78 34 151 0.979 8.14 3.08 Intr - 148627 148490 138 1 0 95 111 50 0.995 8.66 3.07 Intr - 150429 150263 167 1 2 84 89 62 0.936 5.58 3.06 Intr - 151655 151508 148 2 1 80 82 98 0.638 8.21 3.05 Intr - 161216 161085 132 2 0 -12 116 67 0.407 0.34 3.04 Intr - 162260 162110 151 1 1 89 92 137 0.388 14.36 3.03 Intr - 168383 168197 187 0 1 33 72 204 0.381 12.05 3.02 Intr - 169048 168989 60 2 0 111 100 -13 0.261 0.91 3.01 Init - 180300 180153 148 0 1 60 100 98 0.541 6.64 3.00 Prom - 181982 181943 40 -7.66 4.00 Prom + 182776 182815 40 -7.96 4.01 Init + 189487 189818 332 0 2 38 61 218 0.477 8.90 4.02 Intr + 190606 190692 87 1 0 19 99 142 0.520 7.49 4.03 Intr + 206276 206417 142 2 1 94 84 49 0.554 5.46 4.04 Intr + 208322 208448 127 1 1 100 111 -79 0.220 -4.15 4.05 Intr + 213773 213896 124 0 1 91 119 5 0.569 3.54 4.06 Intr + 216167 216345 179 2 2 71 100 107 0.644 9.76 4.07 Intr + 217905 218406 502 1 1 45 111 248 0.648 14.84 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597f:25240487_25460702|GENSCAN_predicted_peptide_1|290_aa MSNYVNDMWPGSPQEKDSPSTSRSGGSSRLSSRSRSRSFSRSSRSHSRVSSRFSSRSRRS KSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRSRSRSR SRGRSYCGRAYAIARGQRYYGFGRTVYPEEHSRWRDRSRTRSRSRTPFRLSEKDRMELLE IAKTNAAKALGTTNIDLPASLRTVPSAKETSRGIGVSSNGAKPELSEKVTEDGTRNPNEK PTQQRSIAFSSNNSVAKPIQKSAKAATEEASSRSPKIDQKKSPYGLWIPI >gi568815597f:25240487_25460702|GENSCAN_predicted_CDS_1|873_bp atgtccaactacgtgaacgacatgtggccgggctcgccgcaggagaaggattcgccctcg acctcgcggtcgggcgggtccagccggctgtcgtcgcggtctaggagccgctctttttcc agaagctctcggtcccattcccgcgtctcgagccggttttcgtccaggagtcggaggagc aagtccaggtcccgttcccgaaggcgccaccagcggaagtacaggcgctactcgcggtca tactcgcggagccggtcgcgatcccgcagccgccgttaccgagagaggcgctacgggttc accaggagatactaccggtctccttcgcggtaccggtcccggtcccgtagcaggtcgcgc tctcggggaaggtcgtactgcggaagggcgtacgcgatcgcgcggggacagcgctactac ggctttggtcgcacagtgtacccggaggagcacagcagatggagggacagatccaggacg aggtcgcggagcagaaccccctttcgcttaagtgaaaaagatcgaatggagctgttagaa atagcaaaaaccaatgcagcgaaagctctaggaacaaccaacattgacttgccagctagt ctcagaactgttccttcagccaaagaaacaagccgtggaataggtgtatcaagtaatggt gcaaagcctgaactgtcggaaaaggtaacagaagatggaactcgaaatcccaatgaaaaa cctacccagcaaagaagcatagcttttagctctaataattctgtagcaaagccaatacaa aaatcagctaaagctgccacagaagaggcatcttcaagatcaccaaaaatagatcagaaa aaaagtccatatggactgtggatacctatctaa >gi568815597f:25240487_25460702|GENSCAN_predicted_peptide_2|484_aa MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQGASLPLTCHSS LCSGSETGKVGQDLTVMAAIGLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQ FPSGKVVITLFSIRLATMSALSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNI FNSLTSSGSSKFVQPASSFSQCVSVTAYVLSLGEPVESLNLKAAVKTDYHMNMMHIYVFA AYFGLSVAWCLPKPLPEGTEDKDQTATIPSLSAMLGALFLWMFWPSFNSALLRSPIERKN AVFNTYYAVAVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTSCHLIPSPWLAMV LGLVAGLISVGGAKYLPGCCNRVLGIPHSSIMGYNFSLLGLLGEIIYIVLLVLDTVGAGN GMIGFQVLLSIGELSLAIVIALMSGLLTGLMQYRMDKSEVIVTVKVVWVKQCNSEYAQGM PATL >gi568815597f:25240487_25460702|GENSCAN_predicted_CDS_2|1455_bp atgagctctaagtacccgcggtctgtccggcgctgcctgcccctctgggccctaacactg gaagcagctctcattctcctcttctatttttttacccactatgacgcttccttagaggat caaaaggggctcgtggcatcctatcaaggtgcgtctcttccactcacctgccacagcagc ctctgctcagggtctgagaccgggaaagttggccaagatctgaccgtgatggcggccatt ggcttgggcttcctcacctcgagtttccggagacacagctggagcagtgtggccttcaac ctcttcatgctggcgcttggtgtgcagtgggcaatcctgctggacggcttcctgagccag ttcccttctgggaaggtggtcatcacactgttcagtattcggctggccaccatgagtgct ttgtcggtgctgatctcagtggatgctgtcttggggaaggtcaacttggcgcagttggtg gtgatggtgctggtggaggtgacagctttaggcaacctgaggatggtcatcagtaatatc ttcaacagcctcaccagcagtgggtccagcaagtttgtacagccagcatcttctttcagt cagtgcgtgtcagtaactgcatatgtcctctcattgggagagcctgtcgaaagtctaaat ttgaaggcagctgtgaagacagactaccacatgaacatgatgcacatctacgtgttcgca gcctattttgggctgtctgtggcctggtgcctgccaaagcctctacccgagggaacggag gataaagatcagacagcaacgatacccagtttgtctgccatgctgggcgccctcttcttg tggatgttctggccaagtttcaactctgctctgctgagaagtccaatcgaaaggaagaat gccgtgttcaacacctactatgctgtagcagtcagcgtggtgacagccatctcagggtca tccttggctcacccccaagggaagatcagcaagacttatgtgcacagtgcggtgttggca ggaggcgtggctgtgggtacctcgtgtcacctgatcccttctccgtggcttgccatggtg ctgggtcttgtggctgggctgatctccgtcgggggagccaagtacctgccggggtgttgt aaccgagtgctggggattccccacagctccatcatgggctacaacttcagcttgctgggt ctgcttggagagatcatctacattgtgctgctggtgcttgataccgtcggagccggcaat ggcatgattggcttccaggtcctcctcagcattggggaactcagcttggccatcgtgata gctctcatgtctggtctcctgacaggattaatgcagtatcgaatggacaagtccgaggtg atagttacagtgaaggttgtctgggtcaaacagtgcaattcagaatatgctcagggaatg ccagccaccttgtaa >gi568815597f:25240487_25460702|GENSCAN_predicted_peptide_3|496_aa MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQGASLPLTCHSS LCSGSETGKVGQDLTVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQ FPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNI FNSLTSSGSSKFVQPASSFSQCVSVTAHVLSLGEPVESLSLKAAVKTDYHMNLRHFYVFA AYFGLTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKN AMFNTYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMV LGLVAGLISIGGAKCLPVCCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLVLHTVWNGN GMIGFQVLLSIGELSLAIVIALTSGLLTGHPLVNAVGRLDQQGPVLSQQVQANSGQAAAR CCAFVSGRSKTGTQAF >gi568815597f:25240487_25460702|GENSCAN_predicted_CDS_3|1491_bp atgagctctaagtacccgcggtctgtccggcgctgcctgcccctctgcgccctaacactg gaagcagctctcattctcctcttctatttttttacccactatgacgcttccttagaggat caaaaggggctcgtggcatcctatcaaggtgcatctcttccactcacctgccacagcagc ctctgctcagggtctgagactgggaaagtcggccaagatctgaccgtgatggcggccctt ggcttgggcttcctcacctcaaatttccggagacacagctggagcagtgtggccttcaac ctcttcatgctggcgcttggtgtgcagtgggcaatcctgctggacggcttcctgagccag ttccctcctgggaaggtggtcatcacactgttcagtattcggctggccaccatgagtgct atgtcggtgctgatctcagcgggtgctgtcttggggaaggtcaacttggcgcagttggtg gtgatggtgctggtggaggtgacagctttaggcaccctgaggatggtcatcagtaatatc ttcaacagcctcaccagcagtgggtccagcaagtttgtacagccagcatcttctttcagt cagtgcgtgtcagtaactgcacatgtcctctcattgggagagcctgtcgaaagtctaagt ttgaaggcagctgtgaagacagactaccacatgaacctgaggcacttctacgtgttcgca gcctattttgggctgactgtggcctggtgcctgccaaagcctctacccaagggaacggag gataatgatcagagagcaacgatacccagtttgtctgccatgctgggcgccctcttcttg tggatgttctggccaagtgtcaactctgctctgctgagaagtccaatccaaaggaagaat gccatgttcaacacctactatgctctagcagtcagtgtggtgacagccatctcagggtca tccttggctcacccccaaaggaagatcagcatgacttatgtgcacagtgcggtgttggca ggaggcgtggctgtgggtacctcgtgtcacctgatcccttctccgtggcttgccatggtg ctgggtcttgtggctgggctgatctccatcgggggagccaagtgcctgccggtgtgttgt aaccgagtgctggggattcaccacatctccgtcatgcactccatcttcagcttgctgggt ctgcttggagagatcacctacattgtgctgctggtgcttcatactgtctggaacggcaat ggcatgattggcttccaggtcctcctcagcattggggaactcagcttggccatcgtgata gctctcacgtctggtctcctgacaggccatcctctagtcaatgctgtgggtaggctggac cagcagggaccagtattgtcacagcaagtccaggccaacagtggtcaggctgctgcccgg tgttgtgcctttgtgagtggcagatccaagaccggaacccaggccttctga >gi568815597f:25240487_25460702|GENSCAN_predicted_peptide_4|498_aa MSTKREGSPAPRPRLAGARTRRAGSRSGPARPGGRCFAVVPSRVLRTRRPRGPQRCPACG RGARAAPPHTPRASLRYVARPHGSAPWRNPGRGRHLRLAGALSPRRGKLAGGRMKRRNAD CSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYD SFRYQGLAFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSL WILFVYIEAAIRFKDLKNFHVDLCRPFAAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQ KENEFYMQLLQQALPPEQQMLQKQEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTL PEIEYREKGKEKDKDAKKHNLGINNNNILQPVDSKIQEIEYMENHINSKRLNNDLVGSTE NLLKEDSCTASSKNYKNASGVVNSSPRSHSATNGSIPSSSSKNEKKQKCTSKSPSTHKDL MENCIPNNQLSKPDALVS >gi568815597f:25240487_25460702|GENSCAN_predicted_CDS_4|1494_bp atgagtacgaagcgtgaagggtcgccggccccgcgtccccgccttgcaggagcccggacc cgccgagcaggctcccggtccggcccggcccggcccggaggccgatgcttcgcggtagtg ccctcgcgggtcctgcggactcggcgcccgcggggcccacagcgctgcccagcctgtgga cgtggagcccgggccgcaccgccgcacacgccccgggcatctctgcgctacgtcgcgcgc ccccacggctccgccccgtggcgtaacccggggcggggccgccacctccgattggccggc gcgctgtcaccacgtcgcgggaagctggcaggcgggaggatgaagcggcggaacgccgac tgcagtaagctccgccgccccctaaagcggaaccggatcaccgagggcatttacggcagt acatttttatacctgaaattcctggtggtgtgggcacttgtcctcctagcagattttgtc ctggagttcagatttgaatacctgtggccattctggcttttcatcagaagcgtctatgat tccttcagataccagggactggccttctcagtattttttgtttgtgtagcattcacgtca aatataatatgcctgctgttcatccccatacagtggcttttttttgctgctagcacatat gtatgggttcagtacgtatggcacacagaaaggggagtgtgtttgcctacagtgtctctc tggatcctctttgtttatattgaagcagccattagatttaaagatctcaaaaactttcat gtagacctttgtcgtccatttgctgctcactgtattgggtaccctgtggtaactttgggg tttggcttcaaaagttacgtaagctacaaaatgcggttaaggaagcaaaaagaagtacaa aaagagaacgagttttacatgcaacttcttcaacaagctctccctccagagcaacagatg ctacagaagcaagaaaaagaggccgaggaagcagccaaaggattacctgatatggattct tcgatccttatacaccacaatggaggtatcccagccaacaaaaaactctccacaactttg ccagagatagaataccgagaaaaagggaaagaaaaggacaaggatgccaaaaaacacaac cttggaataaataacaacaatattctacaacctgtagactctaaaatacaagagattgag tatatggaaaaccatatcaatagtaaaagattaaataatgatcttgtgggaagtacagaa aatctcttgaaagaggactcatgcactgcttcctcaaaaaattacaaaaatgccagtgga gttgtgaactcttcacctcgaagtcatagcgccacaaatgggagcattccttcctcatct agtaaaaatgagaagaagcagaaatgcactagcaagagcccaagtacacacaaggactta atggaaaactgtattcctaataaccagctaagcaaaccagacgcactggtcagn