GENSCAN 1.0	Date run:  6-Nov-116	Time: 20:37:26

Sequence gi568815596f:154598776_154955310 : 356535 bp : 35.16% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  27104  27154   51  1  0   91   77    48 0.386   5.21
 1.02 Intr +  33183  33321  139  2  1   55   89    34 0.293  -0.68
 1.03 Intr +  40584  40672   89  1  2   91   75    52 0.288   2.97
 1.04 Intr +  49325  49442  118  1  1   76   48    72 0.138   1.12
 1.05 Intr +  75014  75151  138  0  0   99   21    67 0.028   0.61
 1.06 Intr +  99236  99377  142  0  1   50   45   133 0.634   3.69
 1.07 Intr +  99946 100702  757  1  1   47  106   959 0.731  84.14
 1.08 Intr + 110828 111044  217  1  1   57  105   119 0.343   7.65
 1.09 Intr + 138800 138963  164  0  2   25   50    99 0.001  -1.43
 1.10 Term + 147283 147348   66  0  0  109   39    52 0.038  -0.64
 1.11 PlyA + 147666 147671    6                               1.05

 2.05 PlyA - 147710 147705    6                               1.05
 2.04 Term - 169940 169180  761  0  2   61   48   215 0.310   7.40
 2.03 Intr - 212466 212431   36  1  0   66   86    55 0.003   0.42
 2.02 Intr - 219547 219424  124  1  1   58   60   103 0.228   3.74
 2.01 Init - 226468 226403   66  1  0   69  110    15 0.343   2.92
 2.00 Prom - 240644 240605   40                              -4.05

 3.03 PlyA - 241409 241404    6                               1.05
 3.02 Term - 242190 241967  224  1  2   79   38   123 0.516   2.50
 3.01 Init - 245295 245091  205  0  1   88   93   178 0.951  17.36
 3.00 Prom - 248458 248419   40                              -8.05

 4.00 Prom + 249586 249625   40                              -6.05
 4.01 Sngl + 255954 256538  585  2  0   67   42   345 0.950  23.73
 4.02 PlyA + 258019 258024    6                               1.05

 5.02 PlyA - 258225 258220    6                               1.05
 5.01 Sngl - 264468 264271  198  0  0   64   42   151 0.144   3.02
 5.00 Prom - 267949 267910   40                              -2.25

 6.00 Prom + 270469 270508   40                              -3.95
 6.01 Sngl + 270607 271002  396  0  0   -1   44   224 0.152   5.10
 6.02 PlyA + 275803 275808    6                               1.05

 7.05 PlyA - 276040 276035    6                               1.05
 7.04 Term - 287934 287648  287  1  2   83   41   160 0.099   5.38
 7.03 Intr - 306361 306156  206  0  2   68   44   100 0.010   1.52
 7.02 Intr - 309353 309221  133  0  1   62   99   116 0.160   8.88
 7.01 Init - 322899 322857   43  0  1   95  116    -7 0.739   3.46
 7.00 Prom - 326448 326409   40                              -4.05

 8.03 PlyA - 326581 326576    6                               1.05
 8.02 Term - 342245 341793  453  2  0  -79   44   367 0.623   9.77
 8.01 Intr - 347486 347381  106  1  1   65   64    62 0.164   0.80

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 266127 266024  104  0  2   64   99   140 0.890  12.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_1|626_aa
MPSECYGTAVISDRDSRTFSTIPTQLSWSNRQKAVQISSRVLLSAHKFILERQRSYSFYT
RTINLGDSYALFELLAGRGVSKLFVLEDNLEGEYTALQILATSGAPTSVPAKYQECLLLF
LFDYSASQKLPPGCFGWNAFIFPLCCNSCFPVIAHDVPVSWSHTSLQQKAECRHKPLPSE
RGGGLRALEGPPEGPGGARGNSAVGGRQADRSLESGTRESEPGGRGAQLLRLRFAFESGS
PLRIMSALRRKFGDDYQVVTTSSSGSGLQPQGPGQDPQQQLVPKKKRQRFVDKNGRCNVQ
HGNLGSETSRYLSDLFTTLVDLKWRWNLFIFILTYTVAWLFMASMWWVIAYTRGDLNKAH
VGNYTPCVANVYNFPSAFLFFIETEATIGYGYRYITDKCPEGIILFLFQSILGSIVDAFL
IGCMFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSR
QTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEIV
VILEGIVETTARGRTEPVEIHRNIENTPTKLLDMKTIMLEMKNKLYGINGKLNIAEGKTG
EFEDMLIQLEHDKNEYLYDDPLLLNE

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_1|1881_bp
atgccctcagagtgttatggaacagctgtgatttctgaccgtgactctcggaccttttca
acaattcccacccaactgtcatggtcaaatcgtcaaaaggctgttcaaatcagcagcaga
gtcttgttgtcagcacacaaatttattctggaaagacaaaggagttattccttctacaca
aggaccatcaatctaggagatagctatgcactttttgagcttttggctggaagaggagtt
tccaagttatttgtccttgaggataacctggagggtgagtacactgccctgcaaattttg
gccacctctggtgctccaacctctgtccctgcaaaatatcaagagtgcctacttctgttt
ttgtttgactattctgcatcgcagaaattgccaccaggctgcttcgggtggaatgcattt
atctttccattgtgttgtaattcctgtttcccagttattgctcatgatgtgcctgtcagt
tggtcccacacatctctgcagcagaaagcagagtgccgacacaagccattgccctctgag
cgcgggggcggcctgcgggcccttgagggtccgccggagggccccggtggcgcccgcgga
aactcggcggtcgggggacgccaggcggacaggtctctggagtccggaacccgggaatct
gagcccggagggcgtggcgcccagctcctgcgccttcgcttcgcgtttgaatctggctcg
ccccttcgtattatgtctgcactccgaaggaaatttggggacgattatcaggtagtgacc
acatcgtccagcggctcgggcttgcagccccaggggccaggccaggaccctcagcagcag
cttgtgcccaagaagaagcggcagcggttcgtggacaagaacggccggtgcaatgtacag
cacggcaacctgggcagcgagacaagccgctacctctcggacctcttcaccacgctggtg
gacctcaagtggcgctggaacctcttcatcttcattctcacctacaccgtggcctggctt
ttcatggcgtccatgtggtgggtgatcgcctacactcggggcgacctgaacaaagcccac
gtcggtaactacacgccttgcgtggccaatgtctataacttcccttctgccttcctcttc
ttcatcgagacggaggccaccatcggctatggctaccgatacatcacagacaagtgcccc
gagggcatcatcctcttcctcttccagtccatcctgggctccatcgtggacgccttcctc
atcggctgcatgttcatcaagatgtcccagcccaagaagcgcgccgagaccctcatgttc
agcgagcacgcggtgatctccatgagggacggaaaactcacgcttatgttccgggtgggc
aacctgcgcaacagccacatggtctccgcgcagattcgctgcaagctgctcaaatctcgg
cagacacctgagggtgagttccttccccttgaccaacttgaactggatgtaggttttagt
acaggggcagatcaactttttcttgtgtcccccctcacaatttgccacgtgatcgatgcc
aaaagccccttttatgacctatcccagcgaagcatgcaaactgaacagttcgagattgtc
gtcatcctagaaggcattgtggaaacaactgctagaggaaggactgaaccagtagagata
catagaaatattgaaaatactccaaccaagcttctagacatgaaaactataatgttggag
atgaaaaataaactgtatggaattaatggcaaattaaacattgcagaaggaaagactggt
gaatttgaagacatgcttattcaacttgaacatgacaagaatgaatacctttatgatgac
ccacttctacttaatgaatag

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_2|328_aa
MRSRRVRRLPKVGKTQKDDRKRPFQWENIFNVNSNPRPILRRISEIEEGYVIPHNLEESK
VTYALFRPCIPEDLEELEKTTLKFIWNQKRARIAKTILSQKSTAGGIMLPDFKLYYKATV
TKTAWYWYQNRDIDQWNRTEPSEITPHIYNHLIFDKPDKNKKWEKDSLFNKWCWENWLAI
CRKLKLDPFLTPYTKINSRWVKDLHVRPKTIKTLEENLGNTIQDIGMGKDFMTKMPNAMA
TKDKIDKWDLIKLKSFCTAKETTSRVNRQPTEREKIFAIYPPDKGLISRIYKELKQIYKK
KSNNPIKKWVKDINRHSQKKTFMQPTDT

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_2|987_bp
atgaggtcaagaagagtgagaaggcttccaaaggtaggaaaaacacagaaggatgacagg
aaaaggccatttcagtgggaaaatattttcaatgttaactccaatccaagacccatactt
cgaagaatttcagaaattgaggaaggctatgttattccccacaacctagaggagtccaag
gttacatatgccctcttccggccatgcattccagaagatttagaagaattagaaaaaact
actttaaagttcatatggaaccaaaaaagagcccgcattgccaagacaatcctaagccaa
aagagcacagctggaggcatcatgctacctgacttcaaactatactacaaggctacagta
accaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagag
ccctcagaaataacaccacacatctacaaccatctgatctttgacaaacctgacaaaaac
aagaaatgggaaaaggattccctatttaataaatggtgctgggaaaactggctagccata
tgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatgg
gttaaagacttacatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaat
acaattcaggacataggcatgggcaaagacttcatgactaaaatgccaaatgcaatggca
acaaaagacaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaa
gaaaccaccagcagagtgaacaggcaacctacagaacgggagaaaatttttgcaatctac
ccacctgacaaagggctaatatccagaatctacaaagaacttaaacaaatttacaagaaa
aaatcaaacaaccccatcaaaaagtgggtgaaggatataaacagacattctcaaaagaag
acatttatgcagccaacagacacatga

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_3|142_aa
MGRNQSRKAENSKNQRACSPPKDRSSSPAMEQSWMENDFDELTEVGFRRPVITNFSELKE
DVRTHSKEGLEVLARAIRKDKEIKGIQLGNEEVKLSLFADDMIVYLENPIISAQNLLKLI
SNFIKVSGCKNQCAKITSISIH

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_3|429_bp
atggggagaaaccagagcagaaaagctgaaaattctaaaaatcagagggcctgttctcct
ccaaaggatcgcagctcctcgccagcaatggaacaaagctggatggagaacgactttgac
gagttgacagaagtaggcttcagaaggccggtaataacaaacttctctgagctaaaggag
gatgttagaacccatagcaaggaagggttggaagttctggccagggcaatcaggaaagac
aaagaaataaagggtattcagttaggaaatgaggaagtcaaattgtccctgtttgcagat
gacatgatcgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgata
agcaacttcatcaaagtctcaggatgcaaaaatcaatgtgcaaaaatcacaagcatttct
atacactaa

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_4|194_aa
MTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLM
SSPLIAPAITNSKERHNSVECLDGLDDITTKLPSKLQKITGREDFPKKLLRMSSTTSEKA
YSLGDLPMKLQRISSVPGNSEEKLVSKTTKMLSDPMSQSVADLPPKLQKMAGGAARMEGN
LPAKLRKMNSDRFT

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_4|585_bp
atgacttgtcaagctcgaacatcatatactgaagatgaagttctttggggtcatcgtttt
tttcctgtaatttccttagaagagggattctttaaagttgattactcccagttccatgca
acatttgaagtccccaccccaccttacagtgtgaaagagcaggaggaaatgcttctcatg
tcgtcccctttaatagcaccagccataactaacagcaaagaaagacataattctgtggaa
tgcttagatggactagatgatattactacaaaactaccatctaagctgcagaaaattact
ggaagagaagactttcccaaaaaactcttgaggatgagttctacaacttcagaaaaagcc
tacagcttgggagacttgcccatgaaacttcaacgaataagttcagttccgggcaactca
gaagaaaaactggtatctaaaaccaccaagatgttatctgatcccatgagccagtctgtg
gctgatttgccaccaaagcttcaaaagatggctggaggagcagctaggatggaagggaac
cttccagccaaattaagaaaaatgaactctgatcgcttcacataa

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_5|65_aa
MFHETGFLHQEQGEWTLQDDYKGRSQDNTCMASKDLSFIGNVSERLGGGFFKKMKLVGYL
MSLTN

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_5|198_bp
atgttccatgaaacagggtttctacaccaagaacaaggtgaatggactctccaggatgat
tacaaaggaagatcccaagacaacacctgtatggcgtcaaaagatctttccttcatagga
aacgtctcagaacgtcttggtggaggcttcttcaagaagatgaaacttgtagggtatcta
atgagtctgacaaattaa

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_6|131_aa
MKLQKLNSGSQTPQQDLINLAFKVYNNRKKLQFLASTVRQTPATSPAHKNFQTPEPQQPG
VPPEPPPPGACYKCQKSDHQAKECLQPRIPPKPCPICAGPHWKSDCSTHLAATPRAPGSL
AQRCVTDSFSA

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_6|396_bp
atgaaactccaaaaattaaattctggctctcaaaccccacaacaggatttaattaacctc
gccttcaaggtgtacaataatagaaaaaagttgcaattccttgcctccactgtgagacaa
accccagccacatctccagcacacaagaacttccaaacgcctgaaccacagcagccaggc
gttcctccagaacctcctcccccaggagcttgctacaagtgccagaaatctgaccaccag
gccaaggaatgcctgcagcccaggattcctcctaagccgtgtcccatctgtgcgggaccc
cactggaaatcggactgttcaactcacctggcagccactcccagagcccctggatctctg
gcccaacgctgtgtgactgactccttttcggcttag

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_7|222_aa
MVSKVLYHTAFPKQGSEVKLTQPAETTTADTYQHALKGIALSPLYTKQHHSIVPVSGDRP
GGLGGKIWFHGLGPGLFCSMQPKDMVPCIPAASAPAVAKRSQLIAQAIASEDAIPKPWWF
THGFGPGDHMCTHSPCATSASVSAPHHATSLLTHRHLAVCHCQCEYKHGCQKPHPSYITT
AAAANPCTKVGNPMPPLLLVHECKCGHSGPTLTSAVSPLLLM

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_7|669_bp
atggtttccaaagtgctgtaccatacagcattcccaaaacaagggtctgaggtcaagctg
acccaaccagctgaaaccaccacagctgacacctaccagcatgcactaaaaggcatagcc
ctttcccctctctacacaaaacaacatcacagcattgttcctgtatcaggggacaggcct
ggaggcctaggaggaaaaatatggtttcatgggctgggcccagggctcttctgctctatg
cagcctaaggacatggtgccctgcatcccagctgcttcagctccagccgtagctaaaagg
agccaacttatagctcaggccattgcctcagaagatgcaatccccaagccttggtggttt
acacatggttttggacctggggaccacatgtgcacacacagcccctgtgcaacttctgcc
agtgtgagtgcaccccaccatgctacctcattgctgacacacaggcacctggctgtatgc
cattgccagtgtgaatacaagcatggatgccaaaaaccccatccctcctacattaccacc
gcagctgctgcaaacccatgcacaaaagtgggcaaccccatgccaccactgctgctggta
catgaatgcaagtgtggacacagtggccccaccctcaccagtgccgtgtctccattgctg
ctgatgtaa

>gi568815596f:154598776_154955310|GENSCAN_predicted_peptide_8|186_aa
XYKVCVSRISKAQYCNDCGLKLQPFGIQRSCKALQENGKCRKVKEAETEEFVVEVANRKL
EYFPEWKGFTNADSTWEPEDYLECQELIETFLNSQKAGKEKDDTKRKCLSDSESDDSKSK
KRDAADKPRGFARGHDPERKIATERSGEWIFLLEWEYSDKADLLQAKETNMRSHQIVIAS
YEERLP

>gi568815596f:154598776_154955310|GENSCAN_predicted_CDS_8|561_bp
nnttataaagtctgcgtctccaggatttcaaaagctcagtattgtaatgattgtggatta
aaactacagccatttggcatacagagaagttgtaaggcattgcaggagaatgggaaatgt
agaaaagtcaaagaggcagagactgaagaatttgtggtggaagtagcaaataggaagctg
gagtatttcccagagtggaagggatttacaaatgctgacagtacttgggaaccagaagac
tacttagaatgtcaagagttaattgaaacatttcttaactctcaaaaagctggcaaagaa
aaagatgatacaaaaaggaaatgtttatctgacagtgaatctgatgatagcaagtcaaag
aaaagagatgctgctgacaaaccaagaggcttcgccagaggtcatgatccagaaagaaaa
attgccacagagagaagtggtgaatggatatttctcctggaatgggaatattcagataag
gcagacttgctgcaggcaaaagagacaaacatgaggagtcatcaaattgtaattgcttct
tatgaagagcgattgccttga