Result of FASTA (ccds) for pF1KE0372
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0372, 565 aa
  1>>>pF1KE0372 565 - 565 aa - 565 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1639+/-0.00114; mu= 13.2880+/- 0.068
 mean_var=61.1922+/-12.410, 0's: 0 Z-trim(102.3): 37  B-trim: 243 in 1/48
 Lambda= 0.163956
 statistics sampled from 6856 (6874) to 6856 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.211), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS46911.1 COL6A6 gene_id:131873|Hs108|chr3       (2263) 1006 246.9   2e-64
CCDS33410.2 COL6A3 gene_id:1293|Hs108|chr2         (2570)  341 89.6   5e-17
CCDS33409.1 COL6A3 gene_id:1293|Hs108|chr2         (2971)  341 89.6 5.8e-17
CCDS33412.1 COL6A3 gene_id:1293|Hs108|chr2         (3177)  341 89.6 6.2e-17


>>CCDS46911.1 COL6A6 gene_id:131873|Hs108|chr3            (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1270.3  bits: 246.9 E(32554): 2e-64
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
CCDS46 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
CCDS46 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
CCDS46 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
CCDS46 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
CCDS46 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

CCDS46 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>CCDS33410.2 COL6A3 gene_id:1293|Hs108|chr2              (2570 aa)
 initn: 405 init1: 190 opt: 341  Z-score: 419.2  bits: 89.6 E(32554): 5e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2011-2229)

      300       310       320       330       340       350        
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
                                     .:.::..:... .   .:.:.: .:. .. 
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
             1990      2000      2010      2020      2030      2040

      360       370       380       390       400       410        
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
        . ..: : .:    ::::....:   . :.   :: .::.:. :.: ...   :. .. 
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
             2050      2060      2070      2080      2090      2100

       420       430       440       450       460       470       
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
       ::.:   .: :...::.::: ..:: :  :.. .. .::.   . .  . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
             2110      2120      2130      2140      2150      2160

       480       490       500       510       520       530       
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
        . :...: : : ::.  .::.: :  .  . .. . . . ...: . .  ..      :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
             2170      2180      2190      2200      2210      2220

       540       550       560                                     
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW                                
        . :..  :                                                   
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
             2230      2240      2250      2260      2270      2280

>>CCDS33409.1 COL6A3 gene_id:1293|Hs108|chr2              (2971 aa)
 initn: 374 init1: 190 opt: 341  Z-score: 418.0  bits: 89.6 E(32554): 5.8e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2412-2630)

      300       310       320       330       340       350        
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
                                     .:.::..:... .   .:.:.: .:. .. 
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
            2390      2400      2410      2420      2430      2440 

      360       370       380       390       400       410        
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
        . ..: : .:    ::::....:   . :.   :: .::.:. :.: ...   :. .. 
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
            2450      2460      2470      2480      2490      2500 

       420       430       440       450       460       470       
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
       ::.:   .: :...::.::: ..:: :  :.. .. .::.   . .  . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
            2510      2520      2530      2540      2550      2560 

       480       490       500       510       520       530       
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
        . :...: : : ::.  .::.: :  .  . .. . . . ...: . .  ..      :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
            2570      2580      2590      2600      2610      2620 

       540       550       560                                     
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW                                
        . :..  :                                                   
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
            2630      2640      2650      2660      2670      2680 

>>CCDS33412.1 COL6A3 gene_id:1293|Hs108|chr2              (3177 aa)
 initn: 374 init1: 190 opt: 341  Z-score: 417.5  bits: 89.6 E(32554): 6.2e-17
Smith-Waterman score: 341; 28.3% identity (63.9% similar) in 219 aa overlap (329-546:2618-2836)

      300       310       320       330       340       350        
pF1KE0 SLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFITSVLD
                                     .:.::..:... .   .:.:.: .:. .. 
CCDS33 LDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVR
      2590      2600      2610      2620      2630      2640       

      360       370       380       390       400       410        
pF1KE0 YFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQMKHHLQDSQ-
        . ..: : .:    ::::....:   . :.   :: .::.:. :.: ...   :. .. 
CCDS33 QLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMT
      2650      2660      2670      2680      2690      2700       

       420       430       440       450       460       470       
pF1KE0 QLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSLDKDVLRNVSLRAKCQGY
       ::.:   .: :...::.::: ..:: :  :.. .. .::.   . .  . : :.:::.::
CCDS33 QLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGY
      2710      2720      2730      2740      2750      2760       

       480       490       500       510       520       530       
pF1KE0 SIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYIIKFVKPFVHLIRRAINKY
        . :...: : : ::.  .::.: :  .  . .. . . . ...: . .  ..      :
CCDS33 FFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFY
      2770      2780      2790      2800      2810      2820       

       540       550       560                                     
pF1KE0 PTEDMKATCVNMTSPNPENGGTENTVLW                                
        . :..  :                                                   
CCDS33 LSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTT
      2830      2840      2850      2860      2870      2880       




565 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:37:54 2016 done: Thu Nov  3 13:37:54 2016
 Total Scan time:  3.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com