GENSCAN 1.0	Date run: 24-Oct-119	Time: 21:28:45

Sequence gi568815596r:70563498_70806408 : 242911 bp : 43.78% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5512   5564   53  2  2   35  109    59 0.055   1.33
 1.02 Intr +  18430  18605  176  0  2   91   70    31 0.018   0.34
 1.03 Term +  30040  30145  106  1  1   81   34    84 0.042   0.18
 1.04 PlyA +  33684  33689    6                               1.05

 2.05 PlyA -  34505  34500    6                               1.05
 2.04 Term -  45458  45321  138  2  0    1   33   168 0.077   0.56
 2.03 Intr -  46345  46194  152  2  2   45   72    56 0.012  -0.42
 2.02 Intr -  54741  54654   88  0  1   91   90    28 0.036   2.84
 2.01 Init -  65113  64985  129  1  0   78   89   105 0.943   9.75
 2.00 Prom -  67634  67595   40                              -7.06

 3.05 PlyA -  72685  72680    6                               1.05
 3.04 Term -  72737  72706   32  0  2   93   52    50 0.087  -0.08
 3.03 Intr -  77627  77536   92  1  2   74   84    77 0.136   5.54
 3.02 Intr -  84533  84426  108  1  0  116   89    43 0.061   6.60
 3.01 Init -  89243  89230   14  2  2   72   63     8 0.020  -3.56
 3.00 Prom -  90193  90154   40                              -4.66

 4.28 PlyA -  91669  91664    6                               1.05
 4.27 Term - 100238  99928  311  0  2   72   37   410 0.786  29.52
 4.26 Intr - 109509 109381  129  1  0  105   96    -4 0.838   2.77
 4.25 Intr - 109829 109740   90  0  0   67   75    89 0.919   5.47
 4.24 Intr - 111328 111181  148  1  1   44   54   204 0.655  12.41
 4.23 Intr - 113388 113299   90  0  0  125   37    80 0.964   6.79
 4.22 Intr - 114380 114261  120  2  0   90  115   161 0.587  19.69
 4.21 Intr - 114908 114840   69  2  0   84   64    45 0.678   1.08
 4.20 Intr - 115464 115207  258  0  0  105  103   451 0.999  45.96
 4.19 Intr - 120066 120016   51  0  0  104   80     4 0.522   0.30
 4.18 Intr - 120270 120094  177  0  0   86  105   206 0.979  22.22
 4.17 Intr - 124625 124527   99  2  0  113   99    42 0.994   8.11
 4.16 Intr - 127432 127289  144  1  0   72   77   186 0.997  16.38
 4.15 Intr - 129055 128906  150  1  0   95  101   175 0.959  19.86
 4.14 Intr - 132304 132224   81  1  0  104  105    68 0.999   9.93
 4.13 Intr - 132899 132748  152  0  2   71  101   244 0.977  23.88
 4.12 Intr - 133236 133192   45  1  0   81  103    10 0.529   0.18
 4.11 Intr - 134295 134152  144  1  0   83   43   131 0.593   8.35
 4.10 Intr - 140962 140824  139  1  1    1   27   196 0.984   4.84
 4.09 Intr - 142863 142729  135  0  0  101   86   317 0.389  33.56
 4.08 Intr - 148538 148396  143  0  2   51   41   123 0.044   3.97
 4.07 Intr - 187770 187613  158  2  2   86  100   107 0.339  11.35
 4.06 Intr - 203972 203833  140  2  2   31   68    92 0.007   0.76
 4.05 Intr - 209871 209802   70  2  1   76   74    28 0.003  -0.62
 4.04 Intr - 214174 214140   35  1  2   98   96    20 0.013   0.82
 4.03 Intr - 215916 215881   36  0  0   92   98    33 0.026   3.16
 4.02 Intr - 224304 224152  153  0  0  121   98     6 0.784   5.17
 4.01 Init - 227141 226911  231  2  0   85   76   481 0.979  42.86
 4.00 Prom - 230198 230159   40                              -4.06

 5.00 Prom + 233830 233869   40                              -7.46
 5.01 Init + 239304 239306    3  2  0  108   81     0 0.744   1.30
 5.02 Term + 239627 239929  303  1  0   10   45   344 0.764  17.47
 5.03 PlyA + 240720 240725    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 217431 217512   82  2  1   90   86   113 0.933  12.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:70563498_70806408|GENSCAN_predicted_peptide_1|111_aa
XITKDLAISLFLMPDTSQVIRFPSGDPCSLRSNVSSADHSCQLTYSSSSNPFLCFFLINL
HDEEATTGKMCGHEGNLVKHESVSVNPCTGYPSQGALAGKKEKPSANLNRR

>gi568815596r:70563498_70806408|GENSCAN_predicted_CDS_1|336_bp
natatcactaaagatctggccatcagcctcttcctgatgccagacacaagtcaggtaatt
cgtttcccatcaggtgacccttgcagcctacgctcaaatgtgtcttctgcagatcatagt
tgccagttgacctactcgtcttcctcaaacccttttttgtgcttctttcttataaacctg
catgatgaagaagctacaacaggaaaaatgtgtggacatgaagggaacttggtcaagcat
gaatcagtatctgtcaacccatgtaccggatatcctagtcagggggctcttgctggcaaa
aaagagaagccttccgccaatctgaatagaagatga

>gi568815596r:70563498_70806408|GENSCAN_predicted_peptide_2|168_aa
MEYYAAIKRNQIMSFAGTWMELEAIILSKLTQQQKTKYHMFSLVYYIAQAYICVFYFPIM
VMLDFIAIYRNGETGLRGIMATGRGSTMACSSPAHPRANGLEEATATLKTSKNILEASSK
ANWQREVFAQGYKQIAGDVPLWYPKEMYLETVCQGDQHQALGTGKEIQ

>gi568815596r:70563498_70806408|GENSCAN_predicted_CDS_2|507_bp
atggaatactacgcagccataaaaaggaaccagatcatgtcctttgcagggacgtggatg
gagctggaagccattatccttagcaagctaacgcagcaacagaaaaccaaataccacatg
ttctcacttgtatactacatcgcacaggcctatatttgtgtattttactttcccataatg
gttatgttggactttattgccatttatagaaatggagaaacagggcttcggggaatcatg
gccacaggaaggggcagtaccatggcctgctcatcccctgcccacccaagagcaaatggc
ttggaagaagccacagcaacacttaaaacttccaaaaatatactggaagcttctagcaag
gccaactggcagcgtgaagtctttgctcagggttacaagcagattgcaggggacgtgcca
ctctggtaccccaaagagatgtacctggagaccgtgtgccaaggggaccagcaccaggcc
ctggggactgggaaggagattcagtag

>gi568815596r:70563498_70806408|GENSCAN_predicted_peptide_3|81_aa
MAQERNRSKQDAFLFLTGSPQQYHHKPWSLLVTSKGMKDKCHRWEPQGKEDAEVWEAEED
SGPDIASSQRQVLEVPNAAQF

>gi568815596r:70563498_70806408|GENSCAN_predicted_CDS_3|246_bp
atggcacaggaaagaaaccggtccaagcaggatgccttcctttttctgacaggcagcccc
cagcagtaccatcacaaaccttggtctcttcttgtcaccagcaaagggatgaaggataag
tgccatcgctgggagccccagggtaaggaggatgctgaggtatgggaagcagaagaggac
agtggtcctgacattgcatcttctcagaggcaggttctggaggtgcccaatgctgcccag
ttctga

>gi568815596r:70563498_70806408|GENSCAN_predicted_peptide_4|1165_aa
MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL
QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL
LEGAKDSKVVALYDGKTSTTDRFPEVELLSHRTFQGIGSGIISFECGIVMELGLGRCEAG
LAGLGASPGASRSLAARRSAAVAGRAGAASAAAYIEIGATGTFLSNKRQLLYTETFPLEF
QSVKVEGIKQIFQSNLFIIEIRHMKLRKDKALIQVGCPTIQFNSDMNYPKLKGTQANYYK
IKDKVTNMTIPTSGTSHNWGPQGQPYFDRFSEDDPEYMRLRNRAADLRQDFNLMEQKKRV
TMILQSPSFREELEGLIQEQMKKGNNSSNIWALRQIADFMASTSHAVFPTSSMNHIITST
NGTLDAGHTSSALAFVDHVITSTNGTLDAGYTSYCSKFHRGEVYSCFDSVPIFRVYDVSM
MTPINDLHTADSLNLAKGERLMRCKISSVYRLLDLYGWAQLSDTYVTLRVSKEQDHFLIS
PKGVSCSEVTASSLIKVNILGEVVEKGSSCFPVDTTGFCLHSAIYAARPDVRCIIHLHTP
ATAAVSAMKWGLLPVSHNALLVGDMAYYDFNGEMEQEADRINLQKCLGPTCKILVLRNHG
VVALGDTVEEAFYKIFHLQAACEIQVSALSSAGGVENLILLEQEKHRPHEVGSVQWAGST
FGPMQKSRLGEHEFEALMRMLDNLASPLRLSPLEPGSTRHQGYRTGYTYRHPFVQEKTKH
KSEVEIPATVTAFVFEEDGAPVPALRQHAQKQQKEKTRWLNTPNTYLRVNVADEVQRSMG
SPRPKTTGALGKFKGGAFNIGTSDLMQAQEWMKADEVEKSSSGMPIRIENPNQFVPLYTD
PQEVLEMRNKIREQNRQDVKSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEE
TVPNPFSQLTDQELEEYKKEVERKKLELDETGQEREPGSGPAVCEFFSVALHIWSNILVG
EKETAPEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEEGTKKTETSKAATTEPET
TQPEGVVVNGREEEQTAEEILSKGLSQMTTSADTDVDTSKDKTESVTSGPMSPEGSPSKS
PSKKKKKFRTPSFLKKSKKKEKVES

>gi568815596r:70563498_70806408|GENSCAN_predicted_CDS_4|3498_bp
atggaccccgcgcccggcgtcctagatccccgcgccgcgccgcccgcgctcctgggcacc
ccgcaagccgaggtgctggaggacgtgttgcgggagcagttcgggccgctgccccagctg
gccgctgtctgccggctcaagcggctgccctcgggcggctactcgtccactgaaaacctc
cagttggtgctggagcggcggcgtgtggccaacgccaaggagcgtgagcggataaaaaat
ctcaaccgtggttttgccagattgaaggcacttgtgccatttcttccccaaagcaggaag
cccagcaaagttgatatccttaaaggtgcgactgaatatatacaggttctcagtgatctt
ttggaaggagccaaagactcaaaggtagtggctctatacgatggtaaaacttctaccaca
gatagattcccagaagtagaactgctgagtcacagaacttttcaaggcattggcagtggg
attatttcttttgaatgtggcattgtaatggaactgggtctcgggcggtgcgaggcgggc
ttggcggggctgggcgcgtcccccggggcctcgcgatcgctggctgcgcggcgctcagcc
gcagtggccggccgagcaggtgcggcgtcggcagccgcctacattgagatcggggcaacc
ggcacgtttctgagtaacaagcgtcaactgttatatactgaaacattccctctggaattc
cagagtgtcaaagtggaagggatcaaacagatcttccagtccaacctcttcattatagaa
atcagacacatgaagctgagaaaagataaggcactgatccaagttggctgtcctacaatt
caattcaattctgacatgaactaccctaagttgaagggcacacaagctaactactacaag
ataaaggacaaggtcaccaatatgaccatccccacctcaggcaccagccacaactggggt
ccccaggggcagccttactttgaccgcttctcagaggacgaccccgagtacatgcgcctt
cgcaaccgggcggcggacctgcggcaggacttcaacctgatggagcagaagaagcgcgtc
accatgatcctgcagagtccctctttcagggaggagctggaaggcctcatccaggagcag
atgaagaaggggaacaactcctccaacatctgggccctgcgacagatcgcggacttcatg
gccagcacctcccacgcagtcttcccgacatcttccatgaaccacatcatcacttccact
aatggcacactcgatgcaggacatacatcgtccgccctcgcttttgtagaccacgtcatc
acttccactaatggcacactcgatgcaggatatacatcgtactgcagcaagtttcacaga
ggtgaggtttattcttgctttgattcagtgcccatcttcagagtttatgatgtctccatg
atgacgcctatcaatgacctccacacagctgactccctgaacctggccaaaggggagcgg
ctcatgcggtgcaagatcagcagtgtctaccgactcctggacctctatggctgggcccag
ctgagtgacacctatgtcacgttgagagtcagcaaggagcaggaccacttcctgatcagc
cctaagggagtttcttgcagtgaagtcacagcgtccagcctgatcaaggtgaacattctg
ggagaggtggtggagaagggcagcagctgcttcccagtggacaccacaggcttctgtctg
cactcggccatctatgcagcgaggcccgacgtgcgctgcatcatccacctgcacacaccg
gccacagcagcggtgtcggccatgaagtggggcctcctgcctgtctcccacaatgccctg
ctggtgggggacatggcctattatgacttcaatggggaaatggagcaggaagccgatcgg
atcaacctgcagaagtgccttggacccacctgcaagatcctggtgctaagaaaccatgga
gtggttgctctgggtgacacggtagaggaggcattttacaagatcttccacctgcaggct
gcatgtgagatacaggtgtcggctctgtccagtgccgggggagtggagaacctcatcctc
ctggagcaggagaagcaccggccccatgaggtgggctccgtgcagtgggccgggagcacc
tttgggcctatgcagaagagtcggctgggggagcatgagtttgaggccctcatgaggatg
ctggacaacctggccagtccattgaggcttagccccctggaaccaggaagtacaaggcat
cagggctacagaacaggttacacgtatcgccacccctttgttcaagagaaaaccaaacac
aaaagtgaggtggagattccagccacggtcacagccttcgtgtttgaggaggacggtgcc
ccggtgcccgccctgcgacagcatgcccagaagcagcagaaggagaagacccgctggctc
aatacgcccaacacctacctgcgggtcaatgtggccgatgaggtccagaggagcatgggc
agcccccgacccaagaccacgggggctcttgggaaattcaagggaggagcatttaacatt
gggacttcagatctgatgcaagcccaggagtggatgaaggctgacgaggtggagaaatcc
agcagtggcatgccgattcgcatcgaaaacccaaaccaatttgtgcctctctatactgac
ccccaggaagtactggagatgaggaacaagattcgagaacaaaaccgacaagatgtgaag
tcagcggggcctcagtcccagctcctggcgagcgtcattgccgagaagagccgaagcccg
tctacagagagccagctgatgtccaagggagacgaggataccaaagacgattcagaggag
acggtgcccaaccccttcagccaactcactgaccaggagttggaggagtacaagaaagag
gtggagaggaagaaactagaacttgatgagacaggacaggaacgagagccaggctctggt
ccggccgtgtgcgagttcttcagcgttgccctccacatctggagtaacatattggtagga
gagaaagaaactgccccagaagagcctggctcacctgcaaagtctgcacctgcttctcca
gtgcagagcccagcgaaggaggcagagacaaagagccctttagtctctccttccaagtct
ttagaggaaggtactaagaagacagaaacaagcaaagccgccaccacagagcccgaaaca
acccagccggaaggggtggtggtcaacgggagggaggaggagcagacggcagaggaaatc
ctcagcaaaggcctgagccagatgaccaccagtgctgacacggatgttgatacctctaag
gacaaaaccgagtcggtcaccagcggccccatgtccccagagggctcaccttccaagtct
ccctcaaagaagaaaaagaaattccgaaccccctccttcctgaaaaagagcaaaaagaag
gagaaagtggagtcctga

>gi568815596r:70563498_70806408|GENSCAN_predicted_peptide_5|101_aa
MHLSPTAVTAATLPKRKTEGDVKGDKAKVDTPQRRSTRLSAKPAPPKPEPKPKKAPAKKG
EKVPKGKKGKADAGKEGNYPAEKGDAITDQAREAEGDGEAK

>gi568815596r:70563498_70806408|GENSCAN_predicted_CDS_5|306_bp
atgcatctaagtcccactgctgtcaccgccgccaccttgcccaagaggaagaccgaaggg
gatgttaaaggagataaagccaaggtggacacacctcagagaagatccacaaggttgtct
gctaaacctgctcctccaaagccagagcccaagcctaaaaaggcccctgcaaagaaggga
gagaaggtacctaaagggaaaaagggaaaagctgatgctggcaaggaggggaattaccct
gcagaaaaaggagatgccataacagaccaggccagggaagctgaaggtgatggagaggcc
aagtga