GENSCAN 1.0	Date run:  6-Nov-116	Time: 21:22:20

Sequence gi568815580r:12694281_12984141 : 289861 bp : 43.47% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -   4923   4699  225  0  0   51   86   116 0.538   5.88
 1.02 Intr -   6833   6678  156  2  0   34   74   117 0.934   5.11
 1.01 Init -   8268   8206   63  0  0   92  100   115 0.868  14.25
 1.00 Prom -  21081  21042   40                              -2.96

 2.00 Prom +  24034  24073   40                              -6.46
 2.01 Init +  26309  26403   95  1  2   63  113    88 0.741   8.65
 2.02 Intr +  30219  30339  121  0  1   69   89    49 0.573   3.60
 2.03 Term +  54969  55145  177  2  0  100   49    70 0.164   1.99
 2.04 PlyA +  57640  57645    6                               1.05

 3.06 PlyA -  59765  59760    6                               1.05
 3.05 Term -  61314  60568  747  0  0   49   42   191 0.764   4.05
 3.04 Intr -  62656  62321  336  1  0   -5   84   146 0.342   0.62
 3.03 Intr -  62892  62804   89  1  2   35  108   102 0.848   6.59
 3.02 Intr -  63997  63877  121  1  1   81   55    48 0.336   0.87
 3.01 Init -  64499  64434   66  2  0   74   72    41 0.707   2.17
 3.00 Prom -  64910  64871   40                              -2.26

 4.00 Prom +  68546  68585   40                              -3.36
 4.01 Init +  71507  71578   72  1  0   45   56    70 0.470   0.61
 4.02 Intr +  72738  72905  168  2  0   52   82   101 0.967   6.04
 4.03 Intr +  74903  75037  135  1  0   37   60   130 0.873   5.86
 4.04 Term +  76329  76397   69  2  0   43   55    69 0.646  -2.96
 4.05 PlyA +  78248  78253    6                               1.05

 5.11 PlyA -  80398  80393    6                               1.05
 5.10 Term -  81586  81290  297  1  0    5   42   241 0.380   6.47
 5.09 Intr -  85069  85015   55  0  1   90   44    29 0.024  -2.32
 5.08 Intr - 100205 100104  102  1  0  101   32   137 0.716   8.69
 5.07 Intr - 107871 107690  182  0  2   97   99    90 0.949   9.67
 5.06 Intr - 120075 119923  153  0  0   90   97    24 0.841   3.77
 5.05 Intr - 131664 131530  135  0  0   32   64    83 0.225   1.06
 5.04 Intr - 136761 136663   99  0  0  150  109   107 0.992  19.31
 5.03 Intr - 147186 147023  164  1  2   90   17    46 0.004  -2.61
 5.02 Intr - 164974 164884   91  1  1   49  103   115 0.728   8.67
 5.01 Init - 189861 189793   69  0  0  103   97   133 0.006  16.75
 5.00 Prom - 201423 201384   40                              -3.66

 6.00 Prom + 202276 202315   40                              -6.56
 6.01 Init + 202376 202458   83  1  2   72   80    48 0.572   2.87
 6.02 Intr + 202684 202819  136  1  1   47   30    83 0.314  -1.03
 6.03 Intr + 206931 207047  117  2  0   63   77   107 0.592   7.76
 6.04 Intr + 216991 217123  133  0  1   22  -53   226 0.456   2.12
 6.05 Term + 217498 218078  581  2  2   16   49   392 0.894  22.75
 6.06 PlyA + 220421 220426    6                               1.05

 7.08 PlyA - 221381 221376    6                               1.05
 7.07 Term - 226813 226754   60  1  0   89   50    38 0.218  -2.10
 7.06 Intr - 227307 227176  132  0  0   41   23   110 0.097   0.64
 7.05 Intr - 234597 234522   76  2  1   68   75    86 0.223   4.82
 7.04 Intr - 235323 235219  105  2  0  104   37    65 0.131   2.33
 7.03 Intr - 240464 240446   19  0  1  106   30    33 0.030  -5.03
 7.02 Intr - 242104 241908  197  0  2   26  107   121 0.487   6.86
 7.01 Init - 244087 244011   77  1  2   59   54    69 0.521   1.16
 7.00 Prom - 251412 251373   40                              -3.56

 8.03 PlyA - 251603 251598    6                               1.05
 8.02 Term - 254311 253767  545  2  2   52   42   368 0.794  23.03
 8.01 Init - 254397 254388   10  0  1   61   85     0 0.322  -2.22
 8.00 Prom - 256436 256397   40                              -2.76

 9.00 Prom + 257467 257506   40                              -5.36
 9.01 Init + 258140 258188   49  1  1   96   58    45 0.121   1.41
 9.02 Intr + 259364 259392   29  0  2   59  100     4 0.121  -3.47
 9.03 Intr + 261183 261329  147  2  0   83   72    60 0.132   4.33
 9.04 Intr + 268880 269091  212  1  2  112  115    -3 0.221   2.51
 9.05 Intr + 276873 276971   99  0  0  112   82   110 0.702  12.03
 9.06 Intr + 284472 284612  141  0  0   82  105    45 0.625   5.07
 9.07 Intr + 288238 288395  158  1  2   68  116   -18 0.051  -1.35
 9.08 Intr + 289760 289801   42  0  0  107   90    16 0.043   1.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 189620 189820  201  1  0   23   48   145 0.936   1.39
S.002 Term - 240464 240442   23  0  2  106   49    35 0.851  -0.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_1|148_aa
MSLPPEKASELKQLIHQQLSKMDVHGRIREILAETIREELAPDQQHLSTEDLIKALRRRG
IIDDVMKELNFVTLILIQHGGIFTFRFWVEKLSWNICKNLSLYLDKFVQRLLYVYIIETN
VFVLNLFHVPVNQIFMMAFYLKYTEKAW

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_1|444_bp
atgtcgctgcctccggagaaagcctccgagctgaagcagctcatccaccagcagctgagc
aagatggatgtccatggtagaataagagaaatccttgctgagactatacgggaagaattg
gcacctgatcaacagcatttatcaacagaagatttgatcaaagcccttagacgtcgagga
atcattgacgatgtgatgaaagaacttaattttgttactctaatattgatccaacacgga
ggtatctttaccttcaggttttgggtggaaaagctttcttggaacatctgcaagaacctg
agcctttacctggacaagtttgttcaacgtttactttatgtttacattatcgaaaccaac
gttttcgttctaaacctgttccatgtgcctgtgaaccagattttcatgatggctttttac
ttgaagtacacagagaaagcttgg

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_2|130_aa
MEKSRCIPEIDDSEFCIRIPGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDALGLVE
YLNEWLQILKPLPQPLLPFLHSWNHSHLGRGGCFLKSLETHSGAHAGPLDSLVSVACPVA
TSPRMPLQGR

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_2|393_bp
atggaaaaaagccggtgcattcctgaaatagatgattccgagttttgtatccgcattccg
ggaggaggtatcacaaaaacactctatgatgaaagctgttctaaagaaatccaaatggca
gttctgctgaaatttgtttcagaaggggacaacatcccagatgcattaggtcttgttgag
tatcttaatgagtggcttcagatactcaaaccacttccccagcccttgctcccgtttctg
cactcttggaatcactctcacctcgggcgtggtggctgcttcctgaagtctctggagaca
cacagtggtgcacacgctggccctctggactcgctggtgtcggtcgcctgccccgtggcc
acatctcctcggatgccgcttcaaggtcgctga

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_3|452_aa
MHNWNRHTQQLAESHIGSLTGRGYINSVALCHNLIWRELDRFSLLQDITLVHYIDDIMLI
GSTIKRVMHSSIPSSNGSGIYMIGLEQVRKAQIVLHDMQPPCENGTASALQPLSRKSLKD
SSEGKSSQWAELRAVHLAVHVAWKEKWPDVRLDTDSWAVANGLARWSGTWKEHDRKIGDK
EVWGRGTRIELSEWSKTVTIFVSHCFYQDYHPSVGSQNALYTNMVFHTALPLTKALTLRL
KNCNSGLMLTEFTGLTMFPIIQGWGKVLQKAVYALNQRPIYGAVSPTDRIHMSRNQGVEV
EVAPLTITPGDPLAKVLLPFPVTLLSAGLAVLVTEGGKLPTGDTTMSPLNWKLKLPPGHF
GLLLPLSQQAKKGVTELAAVIDSNYQDEISPLLHNRGKEEYAWNIGDPLGRLLVLPCPVI
KVNGKLQQPNPGRITNNPDPSGMKVWVIPPGK

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_3|1359_bp
atgcataattggaatagacatactcagcagctggcagaatcccacattggctccctgact
ggtagggggtatatcaactctgtggctttgtgtcataatcttatttggagagaacttgat
cgcttttcgcttctgcaggatatcacactggtccattacattgatgacattatgctgatt
ggatccaccataaagcgtgtcatgcacagcagcattccatcatcaaatggaagtggtata
tacatgatcgggctcgagcaggtccggaaggcacaaatagttctgcacgatatgcagcca
ccatgtgaaaatgggacagcttcagcactacagcctctttctaggaaatccttgaaggac
agcagtgaagggaaatcttcccagtgggcagaacttcgagccgtgcacctggctgtgcac
gttgcatggaaggagaaatggccagatgtgcgattagatactgattcatgggccgtagcc
aatggtttggccagatggtcagggacttggaaggagcatgataggaaaattggtgacaaa
gaagtctggggaagaggtacgcggatagaactctctgagtggtcaaaaactgtgacgata
tttgtatcccattgcttctaccaagactaccatccatccgtgggctcacagaatgcctta
tacaccaacatggtattccacacagcattgcctctgaccaaggcactcactttacggcta
aagaattgcaacagtgggctcatgctcacggaattcactggtcttaccatgttccccatc
atccagggttggggcaaagttctccagaaggccgtgtatgctctgaatcagcgtccaata
tatggtgctgtttctcccacagacaggattcatatgtccaggaatcaaggggtggaagtg
gaagtggcaccactcaccatcacccctggtgatccactagcaaaagttttgcttcctttt
cctgtgacattactttctgctggcctagcggtcttagttacagagggaggaaagctgcca
acaggagacacaacaatgagtccattaaactggaagttaaaattgccacctggacatttt
gggctcctcttacctttaagtcaacaggctaagaagggagttacagagttggctgcagtg
attgactcgaactatcaagatgaaatcagtccactactccacaacagaggaaaggaagag
tatgcatggaatataggagatccattagggcgtctcttagtattaccatgccctgtgatt
aaggtcaatgggaaactacaacagcccaatccaggcaggattacaaataacccagaccct
tcaggaatgaaggtttgggtcattccaccaggaaaatag

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_4|147_aa
MGDAAEEGRLELEPPHSTSCAETQGGHKGKPVGDLRAEVKQEVSRVVHIVACQWARLGSM
GRQRPQGSTFPEPSPGSDVKCDCALEKVKESDVTGLEAGSELTPVPGDAKHHRGPPVRVG
ACGGQPHSIFSGIHRIGLEQVKKEQVA

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_4|444_bp
atgggagacgcagcagaagagggccgcctggagctcgagccgccccacagcacctcctgt
gctgagacacagggtggtcataagggcaaacctgtgggagatctgagggcagaagtgaag
caggaggtgtcacgtgtcgtacacatcgtcgcctgccagtgggctcgcctcgggagtatg
ggaaggcagcggccgcagggctccaccttccctgagccaagccctgggtcagatgtaaag
tgtgactgtgcgctggagaaggtgaaagaatcagatgttacaggactagaagctggctca
gaattgacaccagttcctggagatgcaaaacaccaccgaggtcccccagtcagagtagga
gcttgtggaggacagccgcattccatcttcagtggaatacacaggattgggctcgagcag
gtcaagaaggaacaagttgcatga

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_5|448_aa
MPTTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPLYWCMKL
PSSWFSPSSMLLRVIFMKIKCVYTSPLKNFTGALSRACACSTAHVPFRGPLPNTCCHFWL
MVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLL
QLENINMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCIKGDSSIQKRW
KELSKEDLSPAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTGLSSKMQDTMEENSESAL
RKRIREDRKATTAQKVQQMKQRLNENERKRKRTHDGCGIPVIMFTFQECRKEKTANTAGH
QKEQTGDTLPLRNITGTVRVHGFILEVSETKNPPNPGHKTTSISQRPKALVSLGPEVRRG
TRGEDEKALEKEGGGRRWECGGANELCG

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_5|1347_bp
atgcccaccaccatcgagcgggagttcgaagagttggatactcagcgtcgctggcagccg
ctgtacttggaaattcgaaatgagtcccatgactatcctcatagagtggccaagtttcca
gaaaacagaaatcgaaacagatacagagatgtaagcccattgtattggtgtatgaagttg
ccttcttcttggttcagtccatcttctatgctgctgagagttattttcatgaaaatcaaa
tgtgtttataccagtcctttaaagaacttcactggggccctgtccagagcctgtgcctgt
agcacggcccacgtgcccttcaggggtccacttcctaacacatgctgccatttctggctt
atggtttggcagcagaagaccaaagcagttgtcatgctgaaccgcattgtggagaaagaa
tcggttaaatgtgcacagtactggccaacagatgaccaagagatgctgtttaaagaaaca
ggattcagtgtgaagctcttgtcagaagatgtgaagtcgtattatacagtacatctacta
caattagaaaatatcaatatggaaaaaggagatgatattaacataaaacaagtgttactg
aacatgagaaaataccgaatgggtcttattcagaccccagatcaactgagattctcatac
atggctataatagaaggagcaaaatgtataaagggagattctagtatacagaaacgatgg
aaagaactttctaaggaagacttatctcctgcctttgatcattcaccaaacaaaataatg
actgaaaaatacaatgggaacagaataggtctagaagaagaaaaactgacaggtgaccga
tgtacaggactttcctctaaaatgcaagatacaatggaggagaacagtgagagtgctcta
cggaaacgtattcgagaggacagaaaggccaccacagctcagaaggtgcagcagatgaaa
cagaggctaaatgagaatgaacgaaaaagaaaaaggacgcatgatggctgcgggatccca
gtcatcatgttcacattccaggagtgcagaaaagaaaaaactgccaacacagccggacat
cagaaggaacaaactggggacacgctgcctttaagaaacataacaggcaccgtgagggtc
cacggcttcattcttgaagttagtgagaccaagaacccacctaatcccgggcacaaaacc
acctcaatctcccaaagaccgaaagccctggtgtcgctgggaccagaggtgagacgtgga
acacgtggggaagatgagaaggcgctggagaaggagggtggtggtcgcagatgggaatgt
ggtggagccaatgagctgtgcgggtaa

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_6|349_aa
MPTLSLDTAAKAHPELRQSPLGSSRPRRTLPALASATLPTGLRQPAGASTERAREQRPSG
AKTPEPSRPPPGQPTRVLIFLASAECHISPLFEDVMLTGPGEREVASPLAALGWFWERRK
GIDLRTNQVVVIRAVDPEEAEDAQQENPALSCATAPTKEEPSHSDLHRMRAQFLIPKSSP
SELEDRGKPLEELAGLARRGPRVLTLSRSSGSARRPRAPPTPFLPGFMGAAGAGNPRGTA
RSPAPRIPTSPARQRTRIRPPRNPASLYSPAESTQQAVLEDGPARLAEARGARREAPCSS
TLGGAPSGSAERSAGRAAAARPALELHEPVLHTAESPRRGPAEPGTERV

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_6|1050_bp
atgcctacgttgtcactcgacacagccgccaaagctcacccggagctgcgtcagtcccca
ctgggttcctccaggccaaggagaactcttcctgcgcttgcaagcgccacgctgcccaca
ggactgcgccagccggccggcgcctcaacagagcgcgccagggagcagcgcccgtcggga
gccaagacgcctgagccatcgaggccgccgccgggccagcccaccagggtcttgatcttc
ttggcatctgcagaatgtcacatcagcccactgtttgaggatgtcatgttaactggacct
ggtgagcgggaagttgcaagtcctctggctgccttgggctggttctgggagaggcgcaag
ggcatcgacctccgcaccaatcaggtggtggtcattagggcagtggacccggaggaggcc
gaggacgcccagcaggagaaccctgcgctcagctgtgctacagccccgaccaaggaggag
ccttcgcactccgacctgcaccgcatgcgcgcccagttcctgatccccaagagcagcccg
tctgagctggaggaccgcggcaagcccttggaggagctggcaggcctggcccgacgagga
ccccgcgtcctgacactgtcaaggagctccgggagcgcaaggcgaccgcgcgctccgcca
acaccttttcttccggggttcatgggcgctgccggcgctggaaatcccaggggcacggcg
aggagcccagctcctaggatcccgacatcgccagcgcggcagaggacgcggatcaggcct
ccccgcaacccggcgtccctctacagtccggccgagtccacgcagcaagctgtactggag
gacggccctgcacggctcgcagaagcccgcggagcccgtcgagaggccccgtgttcgtcc
acgctgggcggcgcgccttccgggagcgcagagagaagcgcaggcagagcggcggccgca
agacccgccttggagctccacgagccggtgctgcacacggcagaatcccctcgacgtggg
cccgcagagccggggacagagagagtctga

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_7|221_aa
MQIGPDEQDAATALDLLVRNVHVRECLSSKGKSASTRKHNSDSTKLSVNVPPSHLGLLML
LSQQAKKGAAVFSGVIGPGYQGKIGLLLPDGGSSVNCVCRGKELGAHSKKVAVHKLGPDP
AGTLISDFQPPKLHVQELQSPYVFANIGVIIFLMLALLRPLKLTGRRSGADTERKVNIKT
LSVMCTFHPCSVSSLCYTQIAEVTGKQVPFGYMNKFFSADF

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_7|666_bp
atgcagattggacctgatgagcaagatgcagcaactgctctagacttattagtaagaaat
gtgcatgtcagagaatgtcttagttccaaagggaagagtgcttccaccaggaaacacaac
agtgattccaccaaactctcagttaacgtgccacccagccacttggggctcctcatgctt
ctgagtcaacaggctaagaagggagctgctgtgttttctggggtgattggtcctggctac
caagggaaaattgggctgctactccccgacggaggttcatccgtgaactgtgtgtgcaga
gggaaggaactgggagcacacagcaagaaagtggctgttcacaagctaggacctgaccct
gctggcaccttgatctcggacttccagcctccaaaactccatgtgcaagagcttcagtca
ccctacgtctttgccaacattggtgtgatcatctttttgatgttagccctcctaagacca
ctgaagctaacaggaagacgttctggtgctgatacagagaggaaagtcaacataaaaacg
ctctcagtgatgtgcacattccatccctgttcggtgtcctccttgtgctacacgcagata
gctgaggttactgggaaacaggtgccgtttggttacatgaataagttctttagcgctgat
ttctga

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_8|184_aa
MCPGRRVNSAGKTHDAEADGGMPLGSRPQPRQRGLGEGPAYPAGGSAHVAPAAQAHGRAA
REAAVTPQYAGGEGFRSVQPGLARHPTASSGVTEPRHSPVPRAAHPLPFLPSGVGPARKR
RAHLNALIAGAGCHPPPVEVERDIVDEILVVRRDAASHKHGFRRARASEEDSGGGSGGGA
WPVA

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_8|555_bp
atgtgccctggtcgtcgggtgaacagcgcgggcaagacccacgacgccgaggctgacggt
gggatgcccctgggttcccgcccgcagccccggcagcgcggcctgggagagggcccggcg
taccctgcgggcgggagcgcgcacgtggcaccagctgcgcaggcgcacgggagggcggcc
cgcgaggccgccgtgaccccacaatacgcgggcggggagggcttccgctcagtccagcca
gggctcgcccgccaccccacagcttccagcggcgtcactgaaccaagacacagccccgtt
ccccgcgccgcccacccactccccttccttccttccggggtcggccccgcccgcaagcgc
cgcgcgcaccttaacgctctgatcgctggagcaggttgccatccgccgcccgtggaagtc
gaaagagacatcgtggatgagatccttgtggtccgccgcgatgctgcgagccacaaacat
ggtttccgtcgggcccgcgcctccgaagaggacagtggcggcggcagcggcggcggcgcg
tggcccgtagcctag

>gi568815580r:12694281_12984141|GENSCAN_predicted_peptide_9|293_aa
MGFRHVGQAGLKLLTSGLSKVPPPFKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEE
IVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVM
NLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRK
YAKAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEI
HIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKX

>gi568815580r:12694281_12984141|GENSCAN_predicted_CDS_9|879_bp
atggggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtctatccaag
gtcccccccccttttaagacacatagtggatctgtatggcgtgtgacatgggcccatcct
gaatttgggcaggttttggcttcctgttcttttgaccgaacagctgctgtatgggaagaa
atagtaggagaatcaaatgataaactgcgaggacagagccactgggttaaaaggacaact
ctggtggatagcagaacatctgttactgatgtgaagtttgctcccaagcacatgggtctt
atgttagcaacctgttccgcagatggtatagtaagaatctatgaggcaccagatgttatg
aatctcagccagtggtctttgcagcatgagatctcatgtaagctaagctgtagttgtatt
tcttggaacccttcaagctctcgtgctcattcccccatgatcgccgtaggaagtgatgac
agtagccccaacgcaatggccaaggttcagatttttgaatataatgaaaacaccaggaaa
tatgcaaaagctgaaactcttatgacagtcactgatcctgttcatgatattgcattcgct
ccaaatttgggaagatctttccatattctagcaatagcgaccaaagatgtgagaattttt
acattaaagcctgtgaggaaagaactgacttcctctggtgggccaacaaagtttgaaatc
catatagtggctcagttcgataatcataattctcaggtctggcgagtgagttggaatata
acaggaacggtgctagcatcttcaggagatgatgggtgtgtaagattgtggaaagctaat
tatatggacaattggaagtgtactggtattttgaaagnn