Result of FASTA (omim) for pF1KE1864
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1864, 385 aa
  1>>>pF1KE1864 385 - 385 aa - 385 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5747+/-0.000362; mu= 21.5101+/- 0.022
 mean_var=75.5254+/-15.075, 0's: 0 Z-trim(114.2): 155  B-trim: 9 in 2/55
 Lambda= 0.147580
 statistics sampled from 23712 (23881) to 23712 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.28), width:  16
 Scan time:  8.480

The best scores are:                                      opt bits E(85289)
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 2525 547.1 2.6e-155
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 2152 467.6 1.9e-131
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 2123 461.5 1.5e-129
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 1953 425.2 1.1e-118
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 1469 322.0   9e-88
NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235) 1469 322.0   9e-88
NP_001276090 (OMIM: 602436) MHC class I polypeptid ( 340) 1286 283.2 6.2e-76
NP_001276083 (OMIM: 600169) MHC class I polypeptid ( 194) 1029 228.2 1.3e-59
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362)  518 119.7 1.1e-26
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366)  518 119.7 1.1e-26
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366)  515 119.1 1.7e-26
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399)  515 119.1 1.8e-26
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399)  515 119.1 1.8e-26
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365)  505 117.0 7.4e-26
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358)  502 116.3 1.1e-25
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359)  502 116.3 1.1e-25
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348)  499 115.7 1.7e-25
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348)  499 115.7 1.7e-25
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431)  497 115.3 2.7e-25
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365)  496 115.0 2.8e-25
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337)  494 114.6 3.6e-25
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343)  493 114.4 4.2e-25
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346)  493 114.4 4.2e-25
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388)  493 114.4 4.5e-25
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420)  493 114.5 4.8e-25
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435)  493 114.5 4.9e-25
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442)  493 114.5 4.9e-25
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338)  491 113.9 5.5e-25
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA  ( 343)  491 114.0 5.6e-25
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323)  488 113.3 8.4e-25
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA  ( 362)  487 113.1   1e-24
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA  ( 391)  487 113.2 1.1e-24
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325)  484 112.4 1.5e-24
NP_001522 (OMIM: 600764) major histocompatibility  ( 341)  459 107.1 6.3e-23
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260)  407 95.9 1.1e-19
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298)  393 93.0 9.7e-19
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254)  368 87.6 3.5e-17
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228)  355 84.8 2.2e-16
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324)  355 85.0 2.8e-16
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365)  346 83.1 1.1e-15
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365)  346 83.1 1.1e-15
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  294 71.9 1.9e-12
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168)  292 71.3   2e-12
NP_001181928 (OMIM: 600764) major histocompatibili ( 296)  289 70.9 4.5e-12
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246)  268 66.3 8.8e-11
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334)  268 66.5 1.1e-10
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242)  263 65.2 1.8e-10
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  260 64.6 2.9e-10
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  260 64.6 2.9e-10
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254)  251 62.7 1.1e-09


>>NP_000238 (OMIM: 600169) MHC class I polypeptide-relat  (383 aa)
 initn: 2216 init1: 2135 opt: 2525  Z-score: 2909.3  bits: 547.1 E(85289): 2.6e-155
Smith-Waterman score: 2525; 96.4% identity (98.4% similar) in 385 aa overlap (1-385:1-383)

               10        20        30        40        50        60
pF1KE1 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD
       ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: :
NP_000 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IHEDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY
       ::::::::::::::::::::::::.::.:::.::::::::::::::::::::::::::::
NP_000 IHEDNSTRSSQHFYYDGELFLSQNLETKEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HAMHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWR
       :::::::::::::::.:.::::: ::::::::::::::::::::::::.::: ::::.::
NP_000 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LVLQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSD
       :::::::::::::::::::  :::::::::::::::::::::::::::::::::::::::
NP_000 LVLQSHWQTFHVSAVAAAA--IFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSD
              310         320       330       340       350        

              370       380     
pF1KE1 HRDATQLGFQPLMSALGSTGSTEGA
       :::::::::::::: ::::::::::
NP_000 HRDATQLGFQPLMSDLGSTGSTEGA
      360       370       380   

>>NP_001170990 (OMIM: 600169) MHC class I polypeptide-re  (332 aa)
 initn: 2152 init1: 2152 opt: 2152  Z-score: 2480.9  bits: 467.6 E(85289): 1.9e-131
Smith-Waterman score: 2152; 98.4% identity (99.4% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE1 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IHEDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HAMHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWR
       :::::::::::::::::.::::: ::::::::::::::::::::::::::::::: ::::
NP_001 HAMHADCLQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LVLQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSD
       :::::::::::::::::                                           
NP_001 LVLQSHWQTFHVSAVAAGCCYFCYYYFLCPLL                            
              310       320       330                              

>>NP_005922 (OMIM: 602436) MHC class I polypeptide-relat  (383 aa)
 initn: 2123 init1: 1768 opt: 2123  Z-score: 2446.8  bits: 461.5 E(85289): 1.5e-129
Smith-Waterman score: 2123; 83.6% identity (91.7% similar) in 384 aa overlap (1-384:1-382)

               10        20        30        40        50        60
pF1KE1 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD
       :::: :.:.::  ::::::.:::::::::::: ::: ::::::::::: :::::::::::
NP_005 MGLGRVLLFLAVAFPFAPPAAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
       ::: ::::::::::.::: :::: ::.::: ::.::: ::.:::::: ::::::::::::
NP_005 RQKRRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRVCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IHEDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY
       ::::.:::.:.:::::::::::::.::.: ::::::::::::::: :: :::::::::::
NP_005 IHEDSSTRGSRHFYYDGELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HAMHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWR
       .::.:::::.:.:::.:.:..:: :::::::: ::.::::::::::::::::::::::::
NP_005 RAMQADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV
       ::::::::.::::::::::::::::::::::: :::::::::::::::::.::::::::.
NP_005 QDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LVLQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSD
       :::::.   :    :.::   . .:::. : :::::::::::::::::::::::::::.:
NP_005 LVLQSQRTDFPY--VSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGD
              310         320       330       340       350        

              370       380     
pF1KE1 HRDATQLGFQPLMSALGSTGSTEGA
       ::::.:::::::::: :::::::: 
NP_005 HRDAAQLGFQPLMSATGSTGSTEGT
      360       370       380   

>>NP_001276089 (OMIM: 602436) MHC class I polypeptide-re  (351 aa)
 initn: 1953 init1: 1598 opt: 1953  Z-score: 2251.6  bits: 425.2 E(85289): 1.1e-118
Smith-Waterman score: 1953; 84.0% identity (92.0% similar) in 351 aa overlap (34-384:2-350)

            10        20        30        40        50        60   
pF1KE1 GPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYDRQK
                                     ::: ::::::::::: ::::::::::::::
NP_001                              MVLSQDGSVQSGFLAEGHLDGQPFLRYDRQK
                                            10        20        30 

            70        80        90       100       110       120   
pF1KE1 CRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHE
        ::::::::::.::: :::: ::.::: ::.::: ::.:::::: :::::::::::::::
NP_001 RRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRVCEIHE
              40        50        60        70        80        90 

           130       140       150       160       170       180   
pF1KE1 DNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAM
       :.:::.:.:::::::::::::.::.: ::::::::::::::: :: :::::::::::.::
NP_001 DSSTRGSRHFYYDGELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAM
             100       110       120       130       140       150 

           190       200       210       220       230       240   
pF1KE1 HADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWRQDG
       .:::::.:.:::.:.:..:: :::::::: ::.:::::::::::::::::::::::::::
NP_001 QADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWRQDG
             160       170       180       190       200       210 

           250       260       270       280       290       300   
pF1KE1 VSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVL
       :::::.::::::::::::::::::::::: :::::::::::::::::.::::::::.:::
NP_001 VSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKALVL
             220       230       240       250       260       270 

           310       320       330       340       350       360   
pF1KE1 QSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRD
       ::.   :    :.::   . .:::. : :::::::::::::::::::::::::::.::::
NP_001 QSQRTDFPY--VSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGDHRD
             280         290       300       310       320         

           370       380     
pF1KE1 ATQLGFQPLMSALGSTGSTEGA
       :.:::::::::: :::::::: 
NP_001 AAQLGFQPLMSATGSTGSTEGT
     330       340       350 

>>NP_001276082 (OMIM: 600169) MHC class I polypeptide-re  (235 aa)
 initn: 1469 init1: 1469 opt: 1469  Z-score: 1696.8  bits: 322.0 E(85289): 9e-88
Smith-Waterman score: 1469; 97.7% identity (99.1% similar) in 220 aa overlap (98-317:1-220)

        70        80        90       100       110       120       
pF1KE1 PQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNST
                                     ::::::::::::::::::::::::::::::
NP_001                               MTLAHIKDQKEGLHSLQEIRVCEIHEDNST
                                             10        20        30

       130       140       150       160       170       180       
pF1KE1 RSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 RSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC
               40        50        60        70        80        90

       190       200       210       220       230       240       
pF1KE1 LQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWRQDGVSLS
       ::::::::::.::::: ::::::::::::::::::::::::::::::: :::::::::::
NP_001 LQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQDGVSLS
              100       110       120       130       140       150

       250       260       270       280       290       300       
pF1KE1 HDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_001 HDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW
              160       170       180       190       200       210

       310       320       330       340       350       360       
pF1KE1 QTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQL
       ::::::::::                                                  
NP_001 QTFHVSAVAAGCCYFCYYYFLCPLL                                   
              220       230                                        

>>NP_001276081 (OMIM: 600169) MHC class I polypeptide-re  (235 aa)
 initn: 1469 init1: 1469 opt: 1469  Z-score: 1696.8  bits: 322.0 E(85289): 9e-88
Smith-Waterman score: 1469; 97.7% identity (99.1% similar) in 220 aa overlap (98-317:1-220)

        70        80        90       100       110       120       
pF1KE1 PQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNST
                                     ::::::::::::::::::::::::::::::
NP_001                               MTLAHIKDQKEGLHSLQEIRVCEIHEDNST
                                             10        20        30

       130       140       150       160       170       180       
pF1KE1 RSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_001 RSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC
               40        50        60        70        80        90

       190       200       210       220       230       240       
pF1KE1 LQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWRQDGVSLS
       ::::::::::.::::: ::::::::::::::::::::::::::::::: :::::::::::
NP_001 LQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQDGVSLS
              100       110       120       130       140       150

       250       260       270       280       290       300       
pF1KE1 HDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_001 HDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW
              160       170       180       190       200       210

       310       320       330       340       350       360       
pF1KE1 QTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQL
       ::::::::::                                                  
NP_001 QTFHVSAVAAGCCYFCYYYFLCPLL                                   
              220       230                                        

>>NP_001276090 (OMIM: 602436) MHC class I polypeptide-re  (340 aa)
 initn: 1863 init1: 931 opt: 1286  Z-score: 1484.3  bits: 283.2 E(85289): 6.2e-76
Smith-Waterman score: 1779; 74.2% identity (81.0% similar) in 384 aa overlap (1-384:1-339)

               10        20        30        40        50        60
pF1KE1 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD
       :::: :.:.::  ::::::.:::::::::::: ::: ::::::::::: :::::::::::
NP_001 MGLGRVLLFLAVAFPFAPPAAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE
       ::: ::::::::::.::: :::: ::.::: ::.::: ::.:::::: :           
NP_001 RQKRRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQK-G-----------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE1 IHEDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY
                                      :::::::::::::: :: :::::::::::
NP_001 -------------------------------VPQSSRAQTLAMNVTNFWKEDAMKTKTHY
                                     110       120       130       

              190       200       210       220       230       240
pF1KE1 HAMHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWR
       .::.:::::.:.:::.:.:..:: :::::::: ::.::::::::::::::::::::::::
NP_001 RAMQADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWR
       140       150       160       170       180       190       

              250       260       270       280       290       300
pF1KE1 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV
       ::::::::.::::::::::::::::::::::: :::::::::::::::::.::::::::.
NP_001 QDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKA
       200       210       220       230       240       250       

              310       320       330       340       350       360
pF1KE1 LVLQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSD
       :::::.   :    :.::   . .:::. : :::::::::::::::::::::::::::.:
NP_001 LVLQSQRTDFPY--VSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGD
       260         270       280       290       300       310     

              370       380     
pF1KE1 HRDATQLGFQPLMSALGSTGSTEGA
       ::::.:::::::::: :::::::: 
NP_001 HRDAAQLGFQPLMSATGSTGSTEGT
         320       330       340

>>NP_001276083 (OMIM: 600169) MHC class I polypeptide-re  (194 aa)
 initn: 1029 init1: 1029 opt: 1029  Z-score: 1191.5  bits: 228.2 E(85289): 1.3e-59
Smith-Waterman score: 1029; 90.9% identity (95.8% similar) in 165 aa overlap (153-317:15-179)

            130       140       150       160       170       180  
pF1KE1 EDNSTRSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHA
                                     ::.. ..  . . :::::::::::::::::
NP_001                 MGQRDQGLDRERKGPQDDPGSYQGPERRNFLKEDAMKTKTHYHA
                               10        20        30        40    

            190       200       210       220       230       240  
pF1KE1 MHADCLQELRRYLESSVVLRRRVPPMVNVTRSEASEGNITVTCRASSFYPRNITLTWRQD
       :::::::::::::::.::::: ::::::::::::::::::::::::::::::: ::::::
NP_001 MHADCLQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQD
           50        60        70        80        90       100    

            250       260       270       280       290       300  
pF1KE1 GVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLV
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_001 GVSLSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKVLV
          110       120       130       140       150       160    

            310       320       330       340       350       360  
pF1KE1 LQSHWQTFHVSAVAAAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR
       :::::::::::::::                                             
NP_001 LQSHWQTFHVSAVAAGCCYFCYYYFLCPLL                              
          170       180       190                                  

>>NP_005505 (OMIM: 106300,142830,608579) major histocomp  (362 aa)
 initn: 295 init1: 137 opt: 518  Z-score: 600.2  bits: 119.7 E(85289): 1.1e-26
Smith-Waterman score: 518; 30.1% identity (63.6% similar) in 349 aa overlap (6-342:9-341)

                  10        20        30        40        50       
pF1KE1    MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFL
               :.:::.. . ..   :..  ::.::  : .:  :  .  :..  ..:   :.
NP_005 MLVMAPRTVLLLLSAALALTETWAGS--HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFV
               10        20          30        40        50        

        60          70        80        90       100           110 
pF1KE1 RYDRQKC--RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIK---DQKE-GLH
       :.: .    : .:.. : :.  : . :::.:.   ....  : .: ...   .:.: : :
NP_005 RFDSDAASPREEPRAPWIEQE-GPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSH
       60        70         80        90       100       110       

             120        130       140       150       160       170
pF1KE1 SLQEIRVCEIHEDNST-RSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLK
       .:: .  :..  :.   :. ... :::. ... : . . ::. ... ::   .. :..  
NP_005 TLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTA-AQ---ITQRKW--
       120       130       140       150       160           170   

              180       190        200       210       220         
pF1KE1 EDAMKTKTHYHAMHADCLQELRRYLESSV-VLRRRVPPMVNVTRSEASEGNITVTCRASS
       : : ... .   ....:.. ::::::..   :.:  :: ..::.   :. . :. : : .
NP_005 EAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALG
             180       190       200       210       220       230 

     230       240       250       260       270       280         
pF1KE1 FYPRNITLTWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGN
       ::: .:::::..:: . ..::.   .. : :. :.: :.:. . .:::::.::...: : 
NP_005 FYPAEITLTWQRDGEDQTQDTELV-ETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEG-
             240       250        260       270       280          

     290       300        310       320       330          340     
pF1KE1 HSTHPVPSGKVLVLQ-SHWQTFHVSAVAAAAAAIFVIIIFYVRC---CKKKTSAAEGPEL
            .:.  .:  . :  .:  . ...:. :.. :..:  :     :..:.:...:   
NP_005 -----LPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSY
          290       300       310       320       330       340    

         350       360       370       380     
pF1KE1 VSLQVLDQHPVGTSDHRDATQLGFQPLMSALGSTGSTEGA
                                               
NP_005 SQAACSDSAQGSDVSLTA                      
          350       360                        

>>NP_001229971 (OMIM: 142840,177900,609423) HLA class I   (366 aa)
 initn: 364 init1: 138 opt: 518  Z-score: 600.2  bits: 119.7 E(85289): 1.1e-26
Smith-Waterman score: 518; 30.0% identity (64.0% similar) in 350 aa overlap (6-342:9-342)

                  10        20        30        40        50       
pF1KE1    MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFL
               ..:::.: . ..   : .  ::.::  :..:  :  .  :..  ..:   :.
NP_001 MRVMAPRALLLLLSGGLALTETWACS--HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFV
               10        20          30        40        50        

        60          70        80        90       100           110 
pF1KE1 RYDRQKC--RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIK---DQKE-GLH
       :.: .    :..:.. :.:.  : . :::::..   ...  :..: ...   .:.: : :
NP_001 RFDSDAASPRGEPRAPWVEQE-GPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSH
       60        70         80        90       100       110       

             120        130       140       150       160       170
pF1KE1 SLQEIRVCEIHEDNST-RSSQHFYYDGELFLSQNVETEEWTVPQSSRAQTLAMNVRNFLK
       .::..  :..  :.   :. ..  :::. ... : . . ::.     :.: :. ..   :
NP_001 TLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTA-----ADTAAQITQR--K
       120       130       140       150            160         170

              180        190        200       210       220        
pF1KE1 EDAMKTKTHYHA-MHADCLQELRRYLESSV-VLRRRVPPMVNVTRSEASEGNITVTCRAS
        .: ..  . .: ... :.. ::::::..  .:.:  :: ..::.   :. . :. : : 
NP_001 LEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWAL
              180       190       200       210       220       230

      230       240       250       260       270       280        
pF1KE1 SFYPRNITLTWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG
       .::: .:::::..:: . ..::.   .. : :.::.: :.:. . .:.:::.::.:.: :
NP_001 GFYPAEITLTWQRDGEDQTQDTELV-ETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEG
              240       250        260       270       280         

      290       300       310       320           330       340    
pF1KE1 NHSTHPVPSGKVLVLQSHWQTFHVSAVAAAAAAIFVIIIF----YVRCCKKKTSAAEGPE
        .  .:.    .    :   :. . ...:. :.. :. ..     .  :..:.:...:  
NP_001 LQ--EPLT---LSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGS
     290            300       310       320       330       340    

          350       360       370       380     
pF1KE1 LVSLQVLDQHPVGTSDHRDATQLGFQPLMSALGSTGSTEGA
                                                
NP_001 CSQAACSNSAQGSDESLITCKA                   
          350       360                         




385 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:27:20 2016 done: Sun Nov  6 21:27:22 2016
 Total Scan time:  8.480 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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