GENSCAN 1.0	Date run:  6-Nov-116	Time: 21:35:53

Sequence gi568815585f:27324739_27535594 : 210856 bp : 44.72% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8214   8335  122  1  2    1  -73   321 0.388   7.51
 1.02 Intr +  37670  37769  100  1  1   83   58    23 0.028  -1.52
 1.03 Intr +  40004  40037   34  0  1   97  105     6 0.162   0.48
 1.04 Intr +  47417  47523  107  2  2   46  109    78 0.195   5.56
 1.05 Intr +  48634  48821  188  2  2   71   46    65 0.157   0.01
 1.06 Term +  58869  59060  192  2  0   31   46   217 0.710   9.22
 1.07 PlyA +  59187  59192    6                               1.05

 2.09 PlyA -  61695  61690    6                               1.05
 2.08 Term -  62786  62623  164  0  2   87   50    76 0.135   1.80
 2.07 Intr -  75805  75630  176  0  2   45  106    39 0.182   0.98
 2.06 Intr -  80275  80068  208  2  1   37  103    86 0.399   3.14
 2.05 Intr -  83659  83506  154  1  1   81   26    88 0.732   1.55
 2.04 Intr -  83997  83895  103  2  1   55   62    98 0.573   4.08
 2.03 Intr -  86860  86808   53  1  2   85   94    40 0.905   2.01
 2.02 Intr -  88757  88623  135  2  0   75   43    51 0.490   0.06
 2.01 Init -  96046  95993   54  1  0   86   89    51 0.726   6.29
 2.00 Prom -  96957  96918   40                              -9.26

 3.00 Prom +  98263  98302   40                              -5.96
 3.01 Init +  99825  99946  122  2  2   68   -9   159 0.389   1.87
 3.02 Intr +  99966 100200  235  0  1   18   78   242 0.493  13.89
 3.03 Intr + 102354 102454  101  2  2   69   75    68 0.863   2.51
 3.04 Intr + 105132 105228   97  0  1   58   92    59 0.870   3.31
 3.05 Intr + 105795 105883   89  2  2   51   58    86 0.554   0.67
 3.06 Term + 107993 108080   88  2  1   75   38    88 0.580  -0.37
 3.07 PlyA + 108472 108477    6                              -0.45

 4.14 PlyA - 108753 108748    6                               1.05
 4.13 Term - 111155 110937  219  2  0  106   28    54 0.676  -1.76
 4.12 Intr - 112535 112378  158  0  2   51  115    69 0.824   5.63
 4.11 Intr - 115550 115251  300  0  0   10   82   247 0.047  13.01
 4.10 Intr - 125403 125326   78  1  0  103   75    45 0.580   4.22
 4.09 Intr - 125874 125771  104  2  2   66   95    75 0.681   5.82
 4.08 Intr - 126532 126369  164  1  2   78   33   145 0.651   6.77
 4.07 Intr - 144120 144021  100  2  1  113   89    71 0.570   9.81
 4.06 Intr - 147909 147834   76  1  1   69   96     8 0.454  -1.73
 4.05 Intr - 149665 149549  117  2  0   44   61    87 0.489   2.04
 4.04 Intr - 150292 150147  146  0  2   76   97    45 0.537   4.13
 4.03 Intr - 152417 152357   61  0  1  100   75    33 0.394   0.99
 4.02 Intr - 169184 169063  122  1  2   89   92    81 0.633   8.74
 4.01 Init - 169675 169596   80  1  2   73   31    42 0.221  -2.37
 4.00 Prom - 170904 170865   40                              -5.06

 5.00 Prom + 171694 171733   40                              -3.26
 5.01 Init + 174459 174576  118  2  1   21  116    83 0.107   4.76
 5.02 Term + 185924 186006   83  0  2   77   49   114 0.806   4.26
 5.03 PlyA + 186121 186126    6                               1.05

 6.00 Prom + 196309 196348   40                              -4.96
 6.01 Init + 203522 203580   59  1  2   79   97    27 0.295   3.50
 6.02 Intr + 208411 208698  288  1  0   50   73   196 0.146  10.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 115413 115251  163  0  1   91   82   172 0.841  16.79
S.002 Sngl + 118178 118372  195  1  0   92   37   134 0.846   3.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_1|247_aa
XEDEDEDEDEDEEEEEEEEEEEEEEEEEEEEEEGWMQWLMPSPELPGVRPDPWLRLASLP
RPERRSQVGRCLHRGPADFPFRKGLRGQLSGKSAAVSAAGTHTPGGGGGGEVGTKIIYYS
TGRSLAEDYGDGLSNKTAWISILVPAPGGLTSLQFRFFTCKIGIRILLEELNKLRSMEYL
EQGLTTLADLPHPYPGPIKTRDPSRQTHKPLYVEKNKSMKEDKRLDIERHQGEHAGRRAL
RQMLAGH

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_1|744_bp
naagaagatgaagatgaagacgaagacgaagatgaagaagaagaggaagaggaggaggaa
gaggaagaagaagaagaagaggaagaagaagaagaagaaggctggatgcagtggctcatg
cctagtccagagctccccggggtccgccctgacccgtggctccgcctcgcctcgctcccg
cgcccagagcggcgctcacaggtcggtcgctgcctgcacagaggtcctgctgacttcccc
ttcagaaaaggactgagagggcagctctctgggaagtcggcagctgtgtctgcagccggc
actcacacacctggcggggggggggggggggaggtgggaaccaagatcatctactacagc
acaggaagaagtttagcagaggattatggagatggtctcagcaacaagactgcctggatt
tccatcctagttcctgccccaggtggcttaacctctctgcagttccgtttcttcacctgt
aaaatagggataagaattctgttggaagaattaaataagctaagaagtatggagtacttg
gaacaaggtctgaccaccctggccgaccttccacacccttatcctggacctataaaaacc
cgagaccctagcaggcagacacacaagccgctgtacgtggagaaaaacaaatcgatgaaa
gaagacaagcggctggacatcgagagacatcaaggggagcatgccggcagaagagcactc
agacagatgctggcaggccattga

>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_2|348_aa
MKVNLEGELKQNYGVPAQMFFGHLRVACCASPKAMLRACATEPSSSSLSIKGIETTGASA
ILVIRKLGHRVVKRMAQSHSYFCTLNCTIPINPETRCFYVFIGYNYLQASSGNRKASPPC
QSVELFKQTNHILPWKPGSTSSSCYYKASSHSPYWFIQCRRCVALHTSHPGANLIFAQQT
RRRLPNLSPVPTRASEPADFLPGPAGLAHVLAPGSASLFLLSHGLTCNTHISPVRPALIG
AFYKPLGSYRAVISVFYNPAYADWCILQSSCKTEKFSKSPLNPGSPAIFTSQHLASYGHT
RLGQRGAASQRRQEMGISTWRSPQPSPPPQRLSPLHTGGATSYQSHKT

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_2|1047_bp
atgaaggtcaacctcgaaggtgaacttaaacagaactatggtgtgcctgctcaaatgttt
tttgggcatctccgtgtggcatgctgtgccagccccaaggcgatgctcagggcatgtgcc
acagaaccttccagctcctcgctgtctattaaaggcattgagacaactggggccagtgcc
atattagtgataaggaaactgggtcaccgagtggttaagcgaatggcccagtcacacagc
tatttctgtaccctcaactgtaccattcccatcaatccagagacccggtgcttttacgtc
ttcattgggtataactatctccaggcttcttctggaaatagaaaggcttcacctccttgc
cagtctgtggaattattcaaacaaaccaatcacatcctcccctggaaaccagggagcacc
tcatcctcctgttactacaaagcctcctctcacagcccctactggttcatccagtgccgc
cgctgtgtggccctgcacacctcccaccccggcgccaacctgatctttgcccagcagacg
cggaggcgcctgcccaacctcagccctgtgcccacgagggcctcagagcccgcagacttc
ctgccgggacctgctggccttgcccatgttttagctcctggctctgctagtcttttcctg
ctgtctcatggtctcacgtgtaacactcacatctccccagtgagaccagcactgattggt
gcattttacaaacctctaggtagctacagagcagtgattagtgtgttttacaatcctgcc
tatgctgattggtgcattttacaatcctcttgtaagacggaaaagttctccaagtcccca
ctcaacccaggaagtccagctatcttcacctctcaacacctggcctcctatggccacaca
cggctgggccagaggggagctgccagccagaggcgacaggaaatgggcattagcacctgg
cgcagtcctcaaccctcgcctcctccccagcgcctcagccctttgcacactggtggtgca
accagttaccaatcgcataagacttag

>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_3|243_aa
MRSSGADAGRCLVTARAPGSVPASREGSAGSRGPGAPVPGTAPGPGLGGAGALDPPAVVA
ESVSSLTIADAFIAAGESSAPTPPRPALPRRFICSFPDCSANYSKAWKLDAHLCKHTGER
PFVCDYEGCGKAFIRDYHLSRHILTHTGEKPFVCAANGCDQKFNTKSNLKKHFERKHENQ
QKQYICSFEDCKKTFKKHQQLKIHQCQHTNEPLFKCTQEGCGKHFASPSKLKRHAKAHEG
VYG

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_3|732_bp
atgcgcagcagcggcgccgacgcggggcggtgcctggtgaccgcgcgcgctcccggaagt
gtgccggcgtcgcgcgaaggttcagcagggagccgtgggccgggcgcgccggttcccggc
accgcgcctggccctgggcttggaggcgccggcgccctggatccgccggccgtggtcgcc
gagtcggtgtcgtccttgaccatcgccgacgcgttcattgcagccggcgagagctcagct
ccgaccccgccgcgccccgcgcttcccaggaggttcatctgctccttccctgactgcagc
gccaattacagcaaagcctggaagcttgacgcgcacctgtgcaagcacacgggggagaga
ccatttgtttgtgactatgaagggtgtggcaaggccttcatcagggactaccatctgagc
cgccacattctgactcacacaggagaaaagccgtttgtttgtgcagccaatggctgtgat
caaaaattcaacacaaaatcaaacttgaagaaacattttgaacgcaaacatgaaaatcaa
caaaaacaatatatatgcagttttgaagactgtaagaagacctttaagaaacatcagcag
ctgaaaatccatcagtgccagcataccaatgaacctctattcaagtgtacccaggaagga
tgtgggaaacactttgcatcacccagcaagctgaaacgacatgccaaggcccacgagggt
gtgtacggatag

>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_4|574_aa
MGLSTKELGNSRAQGKPELGLGREKALAELSNQHLQMGYRCDREIDPFHLCGSQVGFGPA
IAPYPVGTNTRAYGSGQGQVVVMLMELRRKRRPFPGSTLFLLCVPDQGLRCAVAATLSLD
VFAGEYPRLVHDGEAVEVDEAAGKLRLLCFRSQHISVSNATVMKNSGLKPQIWKKSKWTQ
FGLMTCFAPSKQCTGLGQPLSTQLKPSSLAVIIVSVIGFLCSQQQALNQTPGISESKHSR
YEARLGGFTTVDSQSALEEFLIEEEKEGGHGAQTPSTRLSSRLHGSGSGTRGEAPPTTES
EGDSPQIRCTCVRYSMSIACPSTGGRRRRLTNNRVGGSRKCSCGLLPGTAFSTAEDTQNE
GKKTKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTE
PAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIK
KKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRAFS
KNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_4|1725_bp
atgggcttgagcacaaaagaactggggaactcgagggcccagggaaagccagagctgggc
ctgggcagagagaaagctttggcagaactttccaatcagcatctgcaaatgggttacagg
tgtgaccgagaaattgatcccttccacctttgcggcagccaagtaggatttgggccagcc
attgccccatatccagttggcactaacaccagggcttatggctcaggacaaggtcaggtg
gtggtaatgctgatggagctgaggaggaagaggaggcccttcccagggagcaccctcttc
cttctctgtgtccctgaccaaggcctgaggtgtgccgtggcggccacgctctccctggat
gttttcgctggggagtatccgaggctggtccatgacggtgaggcagtagaagtagatgaa
gcagcaggaaagctgaggctgctctgtttcagaagccagcacatctctgtatcaaatgcc
acggtcatgaaaaactcaggccttaaaccccagatttggaagaaaagcaaatggacacag
tttggtttgatgacatgctttgctcccagcaagcagtgcacaggcctgggccagcctctc
agcacccaattaaagccttcttctttggcagtaatcatcgtctcagtcattggctttctg
tgcagccagcagcaggccctaaaccaaaccccaggcatttcagaatccaaacattccagg
tatgaagccagattaggtggcttcacgactgtggactcgcagtctgcccttgaggaattt
cttattgaagaagaaaaagaggggggacacggggcccagacccccagcacccggctttcg
agcaggctccacgggtccgggtccgggacgcggggtgaagccccgcccactacggagagc
gaaggggactcgccgcagatccgctgtacttgcgtccgctacagtatgtcaatcgcttgc
cccagcacaggtgggcgtcgccgccgacttaccaacaaccgggtcgggggctcccggaag
tgctcttgcggcttactgcctggcacagcctttagtaccgctgaagacacccagaatgaa
ggaaaaaagacaaaaaagaataaaacagcttttagtaacgttggaagaaaaattagtcag
cgagttattcacttatttgatgagaagggcaatgatttgggaaacatgcaccgagcaaat
gtgattagacttatggatgagcgagacctgcgactggttcaaaggaacaccagcacagaa
cctgcagagtatcagctcatgacaggattgcagatcctccaggagcggcagaggctgagg
gagatggagaaggcgaaccccaaaactggaccaaccctgagaaaggaactgattttgtct
tcaaatattggacaacatgatttggacacaaagactaaacagattcagcagtggattaag
aaaaaacacctagtccagattaccataaagaaaggaaaaaatgtagacgtgtcagaaaat
gaaatggaggagatatttcatcaaatactccagactatgcctggaatagctacattctca
tctaggccacaagctgttcaaggaggaaaagctttaatgtgtgttcttcgtgctttcagc
aaaaatgaggagaaggcatataaagaaactcaagagacccaggaaagagacactttgaac
aaagaccatggaaatgataaggaatcaaatgttctgcatcagtaa

>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_5|66_aa
MPPPEKEKTTSKKSHQKVDLIPASKGYSDAAVSLSKSYKVPTYIAGAISHIPPVSFTLTT
HQLASP

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_5|201_bp
atgcctcccccagagaaggaaaagacgaccagcaagaaaagtcatcagaaagttgattta
attcctgcatccaaaggttattctgacgctgctgtttctctttctaaatcctacaaagtg
cccacctacattgctggtgccatctcccacatccccccggtgtccttcacactcaccaca
caccagctcgccagtccttga

>gi568815585f:27324739_27535594|GENSCAN_predicted_peptide_6|116_aa
MGVAHEEALMNGLGHPLGDKYPTLPAAASLTSCTGSHRLQTGCKHRGAASEGGQSIEPAE
GAETRPSELGTSRASADHWWCPSSQGSDARLLQSAEKTNRTLHCYFLPDAHESHLX

>gi568815585f:27324739_27535594|GENSCAN_predicted_CDS_6|348_bp
atgggggtggctcatgaggaggccctcatgaatggcttgggccatccccttggtgataaa
tatccaacccttcctgctgcagcttccctgacctcctgcaccgggagccaccggctgcaa
acaggctgcaaacaccggggagctgcaagcgagggcggccagtccatcgagccagcagag
ggcgctgaaacgcggcccagtgaactagggacgtccagggccagcgctgaccactggtgg
tgcccgagctcccagggctctgatgcccggctgctccagtccgcagagaaaactaaccgg
acactccactgctactttcttcccgatgctcatgagtctcacctttgn