Result of FASTA (ccds) for pF1KE2019
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2019, 596 aa
  1>>>pF1KE2019     596 - 596 aa - 596 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0777+/-0.000893; mu= 21.2962+/- 0.054
 mean_var=84.0143+/-16.621, 0's: 0 Z-trim(106.5): 35  B-trim: 38 in 1/51
 Lambda= 0.139926
 statistics sampled from 9138 (9158) to 9138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.274), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(33420)
CCDS55262.1 PDP1 gene_id:54704|Hs109|chr8          ( 562) 3818 781.0       0
CCDS6259.1 PDP1 gene_id:54704|Hs109|chr8           ( 537) 3637 744.4 8.5e-215
CCDS10822.1 PDP2 gene_id:57546|Hs109|chr16         ( 529) 1715 356.4 5.3e-98


>>CCDS55262.1 PDP1 gene_id:54704|Hs109|chr8               (562 aa)
 initn: 3818 init1: 3818 opt: 3818  Z-score: 4167.2  bits: 781.0 E(33420):    0
Smith-Waterman score: 3818; 100.0% identity (100.0% similar) in 562 aa overlap (35-596:1-562)

           10        20        30        40        50        60    
pF1KE2 ALLSMGRCCCRCCCPRGLWMLSAPCCDDRRMCVCPGPRRIGIPVRSSSLPLFSDAMPAPT
                                     ::::::::::::::::::::::::::::::
CCDS55                               MCVCPGPRRIGIPVRSSSLPLFSDAMPAPT
                                             10        20        30

           70        80        90       100       110       120    
pF1KE2 QLFFPLIRNCELSRIYGTACYCHHKHLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLFFPLIRNCELSRIYGTACYCHHKHLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQY
               40        50        60        70        80        90

          130       140       150       160       170       180    
pF1KE2 TQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIED
              100       110       120       130       140       150

          190       200       210       220       230       240    
pF1KE2 RRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA
              160       170       180       190       200       210

          250       260       270       280       290       300    
pF1KE2 LLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAFKRLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAFKRLDN
              220       230       240       250       260       270

          310       320       330       340       350       360    
pF1KE2 DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSW
              280       290       300       310       320       330

          370       380       390       400       410       420    
pF1KE2 SAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ
              340       350       360       370       380       390

          430       440       450       460       470       480    
pF1KE2 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMH
              400       410       420       430       440       450

          490       500       510       520       530       540    
pF1KE2 RQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRH
              460       470       480       490       500       510

          550       560       570       580       590      
pF1KE2 AVGNNEFGTVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVGNNEFGTVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE
              520       530       540       550       560  

>>CCDS6259.1 PDP1 gene_id:54704|Hs109|chr8                (537 aa)
 initn: 3637 init1: 3637 opt: 3637  Z-score: 3970.0  bits: 744.4 E(33420): 8.5e-215
Smith-Waterman score: 3637; 100.0% identity (100.0% similar) in 537 aa overlap (60-596:1-537)

      30        40        50        60        70        80         
pF1KE2 CDDRRMCVCPGPRRIGIPVRSSSLPLFSDAMPAPTQLFFPLIRNCELSRIYGTACYCHHK
                                     ::::::::::::::::::::::::::::::
CCDS62                               MPAPTQLFFPLIRNCELSRIYGTACYCHHK
                                             10        20        30

      90       100       110       120       130       140         
pF1KE2 HLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQKFYLTPPQVNSILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 HLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQKFYLTPPQVNSILK
               40        50        60        70        80        90

     150       160       170       180       190       200         
pF1KE2 ANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCA
              100       110       120       130       140       150

     210       220       230       240       250       260         
pF1KE2 CSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 CSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFN
              160       170       180       190       200       210

     270       280       290       300       310       320         
pF1KE2 SLRTYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLRTYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFS
              220       230       240       250       260       270

     330       340       350       360       370       380         
pF1KE2 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHP
              280       290       300       310       320       330

     390       400       410       420       430       440         
pF1KE2 KSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYH
              340       350       360       370       380       390

     450       460       470       480       490       500         
pF1KE2 TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGG
              400       410       420       430       440       450

     510       520       530       540       550       560         
pF1KE2 YKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEEL
              460       470       480       490       500       510

     570       580       590      
pF1KE2 ARMYRDDITIIVVQFNSHVVGAYQNQE
       :::::::::::::::::::::::::::
CCDS62 ARMYRDDITIIVVQFNSHVVGAYQNQE
              520       530       

>>CCDS10822.1 PDP2 gene_id:57546|Hs109|chr16              (529 aa)
 initn: 1357 init1: 586 opt: 1715  Z-score: 1873.2  bits: 356.4 E(33420): 5.3e-98
Smith-Waterman score: 1715; 54.4% identity (79.9% similar) in 472 aa overlap (126-592:61-525)

         100       110       120       130          140       150  
pF1KE2 SYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQ---KFYLTPPQVNSILKANE
                                     .. :..:: .   .. :.: :.: .:.:.:
CCDS10 VSNRNKLKWRLFSRVPPTLNSSPCGGFTLCKAYRHTSTEEDDFHLQLSPEQINEVLRAGE
               40        50        60        70        80        90

            160       170       180       190       200       210  
pF1KE2 YSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQ
        . :. .....  .:.: :.:::: ::.:.::::..:.:::: :...:.::::.: ::.:
CCDS10 TTHKILDLESRVPNSVLRFESNQLAANSPVEDRRGVASCLQTNGLMFGIFDGHGGHACAQ
              100       110       120       130       140       150

            220       230       240       250       260       270  
pF1KE2 AVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNSLR
       :::::::::.::::. :.:: ..:.:.:: . :::::.: :::.: . :........ ::
CCDS10 AVSERLFYYVAVSLMSHQTLEHMEGAMESMKPLLPILHWLKHPGDSIYKDVTSVHLDHLR
              160       170       180       190       200       210

            280       290       300       310       320       330  
pF1KE2 TYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGAT
       .:::::.::.      ....:::. .:.:::.::::: :.   .     : :.:::::::
CCDS10 VYWQELLDLHM--EMGLSIEEALMYSFQRLDSDISLEIQAPLEDEVTRNLSLQVAFSGAT
              220         230       240       250       260        

            340       350       360       370       380       390  
pF1KE2 ACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHPKSE
       ::.:::::. :::::.:: ::.:::::..: :: . :. :::: :. :: ::: :::.::
CCDS10 ACMAHVDGIHLHVANAGDCRAILGVQEDNGMWSCLPLTRDHNAWNQAELSRLKREHPESE
      270       280       290       300       310       320        

            400       410       420       430       440       450  
pF1KE2 AKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPP
        .... .:::::.:.: ::::::..::: .::. ..: : .    : : .: ::.:.:::
CCDS10 DRTIIMEDRLLGVLIPCRAFGDVQLKWSKELQRSILERGFNTEALNIY-QFTPPHYYTPP
      330       340       350       360       370        380       

            460       470       480       490        500       510 
pF1KE2 YLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVR-IVGEYLTGMHHQQPIAVGGYK
       :::::::::::::::::::::::.::::. .  .:::: .::.   .  :.  .:     
CCDS10 YLTAEPEVTYHRLRPQDKFLVLASDGLWDMLSNEDVVRLVVGHLAEADWHKTDLA--QRP
       390       400       410       420       430       440       

             520       530        540       550       560       570
pF1KE2 VTLGQMHGLLTERRTKMSSVFE-DQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEELA
       ..:: :..:: .:  : :.. : ::::::.:::::.::::.: .. :::. ::.:::.::
CCDS10 ANLGLMQSLLLQR--KASGLHEADQNAATRLIRHAIGNNEYGEMEAERLAAMLTLPEDLA
         450         460       470       480       490       500   

              580       590      
pF1KE2 RMYRDDITIIVVQFNSHVVGAYQNQE
       ::::::::. :: :::. .:::    
CCDS10 RMYRDDITVTVVYFNSESIGAYYKGG
           510       520         




596 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 16 15:42:43 2019 done: Tue Jul 16 15:42:44 2019
 Total Scan time:  1.530 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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