GENSCAN 1.0	Date run:  6-Nov-116	Time: 22:03:44

Sequence gi568815581f:34861567_35062682 : 201116 bp : 43.80% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2541   2650  110  2  2   72   52    78 0.161   1.68
 1.02 Intr +  27470  27641  172  2  1   78  119    80 0.886  10.05
 1.03 Intr +  28100  28119   20  1  2   82   78    36 0.524  -2.59
 1.04 Intr +  28589  28719  131  2  2   66   56    78 0.541   2.74
 1.05 Intr +  29271  29300   30  1  0   71   93    46 0.446   1.50
 1.06 Term +  35264  35376  113  0  2   83   44    70 0.500   0.82
 1.07 PlyA +  37055  37060    6                               1.05

 2.12 PlyA -  38011  38006    6                               1.05
 2.11 Term -  38899  38891    9  1  0  110   41     0 0.109  -4.31
 2.10 Intr -  40936  40764  173  2  2   41  102    80 0.030   4.36
 2.09 Intr -  69485  69383  103  2  1   67  110    87 0.689   8.55
 2.08 Intr -  70934  70801  134  0  2   85   82    96 0.866   9.06
 2.07 Intr -  77764  77617  148  1  1   61  103   128 0.999  11.41
 2.06 Intr -  81077  80918  160  1  1   74  100    96 0.953   9.39
 2.05 Intr -  90487  90384  104  1  2  135   33    60 0.680   4.17
 2.04 Intr -  93033  92860  174  0  0   64   87    91 0.989   6.74
 2.03 Intr -  97128  96994  135  0  0   90   52    64 0.900   3.76
 2.02 Intr -  98084  98021   64  1  1   68   89   110 0.956   7.82
 2.01 Init -  98527  98517   11  1  2   87   33    -6 0.011  -6.21
 2.00 Prom -  99148  99109   40                              -7.56

 3.00 Prom +  99751  99790   40                              -8.26
 3.01 Sngl +  99953 101119 1167  1  0   67   46  1159 0.453 103.71
 3.02 PlyA + 101766 101771    6                               1.05

 4.00 Prom + 117364 117403   40                              -2.16
 4.01 Init + 121701 121986  286  2  1   62  110   287 0.796  25.54
 4.02 Intr + 124422 124565  144  1  0   59  110    78 0.978   7.35
 4.03 Intr + 127861 128097  237  2  0  109   48   231 0.964  18.79
 4.04 Intr + 129397 129548  152  2  2   77   71   149 0.698  11.98
 4.05 Intr + 130189 130271   83  0  2   77   75   171 0.619  13.14
 4.06 Intr + 130392 130469   78  0  0   91   75    56 0.904   3.27
 4.07 Intr + 130958 131126  169  2  1   97   73   302 0.999  29.55
 4.08 Intr + 132710 132865  156  1  0   43   86   173 0.966  12.81
 4.09 Intr + 134498 134629  132  1  0  123   74    70 0.989   9.94
 4.10 Intr + 135008 135087   80  1  2  101  109    54 0.999   7.15
 4.11 Intr + 136172 136259   88  2  1  120   98    87 0.999  12.87
 4.12 Intr + 136653 136730   78  2  0   97   98    51 0.990   6.75
 4.13 Intr + 137038 137161  124  0  1  114   77   184 0.994  20.06
 4.14 Intr + 137741 137883  143  0  2   88  100   204 0.999  21.67
 4.15 Intr + 138216 138290   75  2  0   69   64    91 0.958   4.51
 4.16 Intr + 139691 139837  147  1  0   89   64   158 0.999  13.93
 4.17 Intr + 140343 140538  196  2  1  117   91   166 0.990  18.79
 4.18 Intr + 141102 141223  122  1  2  100  100   144 0.887  17.01
 4.19 Term + 142707 142940  234  2  0  134   39   201 0.682  16.12
 4.20 PlyA + 143220 143225    6                               1.05

 5.08 PlyA - 144567 144562    6                               1.05
 5.07 Term - 150583 150402  182  2  2  100   54   213 0.998  16.87
 5.06 Intr - 153197 153174   24  0  0  102   92     6 0.568   0.40
 5.05 Intr - 155014 154804  211  1  1   84   68   268 0.998  22.89
 5.04 Intr - 156040 155957   84  1  0  124   75   116 0.999  13.92
 5.03 Intr - 160218 159805  414  0  0   43  110   127 0.310   4.70
 5.02 Intr - 164995 164808  188  2  2   89  113    78 0.940   9.81
 5.01 Init - 168486 168354  133  0  1   78   47    73 0.697   2.50
 5.00 Prom - 168610 168571   40                              -2.46

 6.03 PlyA - 170644 170639    6                               1.05
 6.02 Term - 189905 189709  197  0  2   42   49   118 0.339   0.87
 6.01 Intr - 198631 198559   73  1  1   58  105    33 0.120   0.98

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  15796  15978  183  0  0   76   53   127 0.923   5.54
S.002 Init -  99827  99691  137  2  2   52   45   209 0.910  10.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_1|191_aa
KGLKDTFKKQQKNKVKLELNKVPTLEEQQNSTERRSWSAQVKAEDKTARPMLDASWISYS
VLKTAVDDEHYSPSLQIPILRLRGLKDMPRFAQLSHNPNQRAHYSLISAHDDVPPFIIPW
DILMAPETELLDNRAESYSAWHAQGFKLPVDTIKALIPFPINLECLLHLSSSNSAALSAG
CTAELPAEIPI

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_1|576_bp
aaaggactgaaggacacgttcaagaagcagcagaaaaacaaggttaaattagaattaaac
aaagtgccaactttagaggagcaacagaactccacagagaggcgcagctggtcagctcaa
gtcaaagctgaagacaagactgccagacctatgctagatgcctcatggatatcttattcc
gtccttaaaacagctgtggatgatgagcattactcccccagtttgcagattccaatactg
aggctcagaggcttaaaggacatgcccaggtttgcacagctgagccacaaccccaaccag
agggcccattattccctcatcagtgcccacgacgatgtacccccttttatcattccctgg
gatatactcatggccccagagactgagctcctggacaacagagcagagtcttactcagct
tggcatgcacagggattcaaactaccagtggacaccatcaaagctcttatccccttcccc
atcaacctggaatgcctgctccacctttcttcctctaattcagcagcgctcagtgctggc
tgcacagcagaattaccagcagagattccaatttga

>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_2|404_aa
MERRLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGEL
LKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHA
ELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTKEVNSGFFYKTAEEKEKL
VKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGEEKFTFIEECVNPCSVTLLVKGP
NKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQA
FADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQLVGVDLNTGSETKFCPYTQEVVPL
RPIHIDRDLQEADAHKPEGYSVVYTEKCQVDGMPTLPGGTTKVS

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_2|1215_bp
atggagagaaggcttgtttctggtgcaggtgacatcaaactcaccaaagatggcaatgtg
ctgctcgatgagatgcaaattcaacatccaacagcttccttgatagcaaaagtagcaaca
gctcaggatgacgtcacaggagatggtactacttcaaatgttctaattattggagagtta
ttaaaacaagctgacctgtacatttctgagggcctgcaccctagaataatagctgaagga
tttgaagctgcaaagataaaagcacttgaagttttggaggaagttaaagtgacaaaggag
atgaaaagaaaaatcctcttagatgtagctagaacatcattacaaactaaagttcatgct
gaactggctgatgtcttaacagaggttgtggtggattctgttttggctgttagaagacca
ggttaccctattgatctcttcatggtagaaataatggagatgaagcataaattaggaaca
gatacaaaagaggtgaactctggtttcttttataagactgcagaagagaaagagaaattg
gtaaaagctgaaagaaaatttattgaagatagagtacaaaaaataatagacctgaaggac
aaagtctgtgctcagtcaaataaaggatttgtcgtcattaatcaaaagggtgaagaaaag
ttcacttttattgaggagtgtgttaacccttgctctgttaccttgttggttaaaggacca
aataagcatactctcacacaagtcaaggatgccataagagatggacttcgtgctatcaaa
aatgccattgaagatggttgtatggttcctggagctggtgcaattgaagtggcaatggct
gaagctcttgttacatataagaacagtataaaaggaagagctcgtcttggagtccaagct
tttgctgatgccttactcattattcccaaggttcttgctcagaatgctggttatgaccca
caggaaacattagtaaaagttcaggctgagcatgtcgagtcaaaacaacttgtgggcgta
gatttgaatacaggctcagaaaccaaattttgtccttacactcaagaggtcgtgcctttg
aggccaattcacattgacagagacctacaagaagcagatgcacacaagccagaaggctac
tctgtggtttacacagagaaatgccaggtggatggaatgcccaccttgccaggtggcaca
acaaaggtaagttaa

>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_3|388_aa
MPRPTETRIVLGLVAKMASSASARTPAGKRVINQEELRRLMKEKQRLSTSRKRIESPFAK
YNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGAKEASQGSSASSAPHSVKRK
APDADDQDVKRAKATLVPQVQPSTSAWTTNFDKIGKEFIRATPSKPSGLSLLPDYEDEEE
EEEEEEGDGERKRGDASKPLSDAQGKEHSVSSSREVTSSVLPNDFFSTNPPKAPIIPHSG
SIEKAEIHEKVVERRENTAEALPEGFFDDPEVDARVRKVDAPKDQMDKEWDEFQKAMRQV
NTISEAIVAEEDEEGRLDRQIGEIDEQIECYRRVEKLRNRQDEIKNKLKEILTIKELQKK
EEENADSDDEGELQDLLSQDWRVKGALL

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_3|1167_bp
atgcctcgcccgacggaaaccagaatcgttttgggtctggtcgccaagatggcgtcctcc
gcctccgcccggactccggcagggaagcgagtgataaatcaggaagaattgcggcggtta
atgaaggagaagcagcgtctgagcaccagtcggaaacggatagaatctccattcgcgaag
tacaaccgtttggggcagctgagttgtgccctgtgtaacactccggttaagagcgagctc
ctgtggcagactcacgtcctgggaaagcagcaccgagagaaagtggccgagctgaaaggc
gcgaaggaagccagccagggttcgtccgccagttcagcgcctcattccgtcaagaggaaa
gcgccggacgcagacgaccaagatgtcaagagagcgaaggccaccttggtgcctcaggta
cagccctccacatctgcgtggaccaccaactttgacaaaataggaaaggagttcattaga
gcgactcccagtaagccttcaggactcagtttactccccgattatgaagatgaggaggag
gaggaagaggaggaggaaggagatggagaaagaaaaaggggggacgccagcaagccgctc
tccgacgcacagggcaaggagcactcagtttcctcttcacgggaggtaacaagtagtgtg
ctgccaaacgatttctttagtactaatcctcccaaggcccccataattcctcattcaggg
tcaattgagaaagcagaaatacatgaaaaagtggtggaaaggagagaaaacaccgcggaa
gcgttaccggaaggtttttttgacgaccctgaggtagatgcaagagtacgaaaggttgat
gctccaaaagatcagatggacaaagagtgggacgaattccaaaaagccatgaggcaggtc
aacactatttccgaagccatagttgccgaagaggatgaggagggacggttggaccgccag
attggggagatcgatgagcagatagagtgttaccgacgggtggaaaagctacggaatcgc
caggatgaaataaaaaataaacttaaagaaatcctgaccataaaagaactgcagaaaaag
gaagaagagaatgctgacagcgatgatgagggggaactacaggatttgttgtctcaggat
tggagggtgaaaggggcattgttatag

>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_4|907_aa
MAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKL
ERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQ
VTSPVKGASFVTSTNPRKFSGFSERQNEFISVVSPTAKPNNSGEAPSSPTPKRSLSSSKC
DPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGV
IKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQEVDEFLLRLSKLTKEDEQQQALQDIAS
RCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVE
KEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDH
FSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKK
AAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDL
ADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQG
SKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLK
VNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNL
PQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEG
KLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVR
LYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRK
RRLVAPC

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_4|2724_bp
atggctgagcaacggttctgtgtggactatgccaagcgtggcacagctggctgcaaaaaa
tgcaaggaaaagattgtgaagggcgtatgccgaattggcaaagtggtgcccaatcccttc
tcagagtctgggggtgatatgaaagagtggtaccacattaaatgcatgtttgagaaacta
gagcgggcccgggccaccacaaaaaaaatcgaggacctcacagagctggaaggctgggaa
gagctggaagataatgagaaggaacagataacccagcacattgcagatctgtcttctaag
gcagcaggtacaccaaagaagaaagctgttgtccaggctaagttgacaaccactggccag
gtgacttctccagtgaaaggcgcctcatttgtcaccagtaccaatccccggaaattttct
ggcttttcagaaaggcagaatgaattcatctctgttgtttctccaacagccaagcccaac
aactctggggaagccccctcgagccccacccctaagagaagtctgtcttcaagcaaatgt
gaccccaggcataaggactgtctgctacgggagtttcgaaagttatgcgccatggtggcc
gataatcctagctacaacacgaagacccagatcatccaggacttccttcggaaaggctca
gcaggagatggtttccacggtgatgtgtacctaacagtgaagctgctgctgccaggagtc
attaagactgtttacaacttgaacgataagcagattgtgaagcttttcagtcgcattttt
aactgcaacccagatgatatggcacgggacctagagcaggaagtggatgagttccttctg
cggctgtccaagctcaccaaggaggatgagcagcaacaggccctacaggacattgcctcc
aggtgtacagccaatgaccttaaatgcatcatcaggttgatcaaacatgatctgaagatg
aactcaggtgcaaaacatgtgttagacgcccttgaccccaatgcctatgaagccttcaaa
gcctcgcgcaacctgcaggatgtggtggagcgggtccttcacaacgcgcaggaggtggag
aaggagccgggccagagacgagctctgagcgtccaggcctcgctgatgacacctgtgcag
cccatgttggcggaggcctgcaagtccgttgagtatgcaatgaagaaatgtcccaatggc
atgttctctgagatcaagtacgatggagagcgagtccaggtgcataagaatggagaccac
ttcagctacttcagccgcagtctcaagcccgtccttcctcacaaggtggcccactttaag
gactacattccccaggcttttcctgggggccacagcatgatcttggattctgaagtgctt
ctgattgacaacaagacaggcaaaccactgccctttgggactctgggagtacacaagaaa
gcagccttccaggatgctaatgtctgcctgtttgtttttgattgtatctactttaatgat
gtcagcttgatggacagacctctgtgtgagcggcggaagtttcttcatgacaacatggtt
gaaattccaaaccggatcatgttctcagaaatgaagcgagtcacaaaagctttggacttg
gctgacatgataacccgggtgatccaggagggattggaggggctggtgctgaaggatgtg
aagggtacatatgagcctgggaagcggcactggctgaaagtgaagaaagactatttgaac
gagggggccatggccgacacagctgacctggtggtccttggagccttctatgggcaaggg
agcaaaggcggcatgatgtcaatcttcctcatgggctgctacgaccctggcagccagaag
tggtgcacagtcaccaagtgtgcaggaggccatgatgatgccacgcttgcccgcctgcag
aatgaactagacatggtgaagatcagcaaggaccccagcaaaatacccagctggttgaag
gtcaacaagatctactatcctgacttcatcgtcccagacccaaagaaagctgccgtgtgg
gagatcacaggggctgaattctccaaatcggaggctcatacagctgacgggatctccatc
cgattccctcgctgcacccgaatccgagatgataaggactggaaatctgccactaacctt
ccccaactcaaggaactgtaccagttgtccaaggagaaggcagacttcactgtagtggct
ggagatgaggggagctccactacagggggtagcagtgaagagaataagggtccctcaggg
tctgctgtgtcccgcaaggcccccagcaagccctcagccagtaccaagaaagcagaaggg
aagctgagtaactccaacagcaaagatggcaacatgcagactgcaaagccttccgctatg
aaggtgggggagaagctggccacaaagtcttctccagtgaaagtaggggagaagcggaaa
gctgctgatgagacgctgtgccaaacaaaggtattgctggacatcttcactggggtgcgg
ctttacttgccaccctccacaccagacttcagccgtctcagacgctactttgtggcattc
gacggggacctggtacaggaatttgatatgacttcagccacgcacgtgctgggtagcagg
gacaagaaccctgcggcccagcaggtctccccagagtggatttgggcatgtatccggaaa
cggagactggtagctccctgctag

>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_5|411_aa
MEYYAAIKNDEFMSFVGTWMKLEIIILSKLLQGQKTKHRMFSLIDFIMWATCCNWFCLDG
QPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARKQQTCLDCKKNFCM
TCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEELVLL
VLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQV
QENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRASLSDLTDLEDIEG
LTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLE
ENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_5|1236_bp
atggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatg
aaattggaaatcatcattctcagtaaactattgcaaggacaaaaaaccaaacaccgcatg
ttctcgctcatagattttatcatgtgggcaacctgctgcaactggttctgcctggatgga
cagcctgaggaggtcccaccaccccagggagccaggatgcaggcctattccaaccctggg
tacagctccttcccttccccaacaggcttggaaccaagctgcaagtcctgtggggctcac
tttgcaaacacggccaggaagcagcagacctgcttggactgtaagaaaaatttttgcatg
acctgttcgagccaagtagggaatgggccccgcctctgccttctctgccaacggtttcga
gctacagcctttcagcgagaggagctcatgaagatgaaggtgaaggacttgagggactat
ctcagcctccatgacatctctaccgaaatgtgccgggagaaagaagagctggtgctcttg
gtccttggccagcagcctgtaatctcccaggaggacaggactcgtgcctccaccttgtcc
ccagactttcctgagcagcaggccttcctgacccagcctcactccagcatggttccacct
acctcacccaacctcccctcttcatctgcacaagccacctctgttcccccagcccaggtt
caggagaatcagcaggccaatggccatgtgtctcaggatcaagaggaacccgtctacctg
gagagcgtggccagagtacctgctgaggatgagacccagtctattgactcagaggacagc
tttgtcccaggccgaagggcctctctgtctgacctgactgacctggaggacattgaaggc
ctgacagtgcggcagctgaaagagatcttggctcgcaactttgtcaactacaagggctgc
tgtgagaagtgggagctgatggagagagtgacccggctatacaaggatcagaaaggactc
cagcacctggtcagtggtgccgaagaccaaaacgggggagcagtaccatcaggcttggag
gagaacctgtgtaagatctgcatggactcacccattgactgtgttcttctggagtgtggc
cacatggtaacctgtaccaagtgtggcaagcgcatgaatgaatgtcccatctgccggcag
tatgtaatccgagctgtgcatgtcttccggtcctga

>gi568815581f:34861567_35062682|GENSCAN_predicted_peptide_6|89_aa
VFLLYFKYLEVVKTCCPGGVSNQAVNQLAADMKGYLLVEGLGYSGGKRSDSPKQEVKCKQ
DVFVCCNSCACVLKLGAVKKSRLLVFELG

>gi568815581f:34861567_35062682|GENSCAN_predicted_CDS_6|270_bp
gtttttcttttatacttcaaatatctggaagttgtgaaaacctgctgccctggtggagta
tcaaaccaggctgtgaaccagttggcagcagatatgaaaggttacctacttgttgaaggt
ctagggtacagcggtggaaagagatcagatagcccaaaacaggaagtcaagtgcaaacag
gatgtgtttgtctgctgtaactcgtgtgcctgtgttttgaaacttggtgctgttaaaaag
tcaagacttctagtatttgagcttggctga