GENSCAN 1.0	Date run:  6-Nov-116	Time: 22:07:02

Sequence gi568815595r:184610901_184811821 : 200921 bp : 48.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +     95    430  336  1  0   36  -35   234 0.034   1.24
 1.02 Intr +   6343   6610  268  0  1   29   89   467 0.466  38.01
 1.03 Term +   7861   8048  188  2  2   22   55   136 0.278   1.35
 1.04 PlyA +  10008  10013    6                               1.05

 2.04 PlyA -  10343  10338    6                               1.05
 2.03 Term -  19308  19132  177  0  0   75   54   146 0.540   7.59
 2.02 Intr -  30608  30446  163  1  1   69   56    75 0.190   2.38
 2.01 Init -  33544  33525   20  1  2   89  110     9 0.393   2.77
 2.00 Prom -  35013  34974   40                              -4.86

 3.12 PlyA -  38025  38020    6                               1.05
 3.11 Term -  46234  46032  203  2  2   48   55   106 0.083   0.85
 3.10 Intr -  55018  54919  100  1  1   16  100    84 0.020   2.08
 3.09 Intr -  59352  59239  114  0  0   22   47   114 0.026   1.34
 3.08 Intr -  61712  61534  179  0  2   53  103    12 0.004  -1.16
 3.07 Intr -  73284  73119  166  0  1   95   78    47 0.834   3.93
 3.06 Intr -  73821  73696  126  0  0  101  109    49 0.982   9.18
 3.05 Intr -  74063  74028   36  2  0  133   40    53 0.859   3.46
 3.04 Intr -  81293  81113  181  1  1   46   70   112 0.013   5.07
 3.03 Intr -  82496  82407   90  1  0   70   92    27 0.010   0.41
 3.02 Intr - 101251 100002 1250  1  2   46   81   934 0.046  75.80
 3.01 Init - 109005 108946   60  0  0   48  111    26 0.255   2.15
 3.00 Prom - 114027 113988   40                              -0.56

 4.00 Prom + 115028 115067   40                              -5.76
 4.01 Init + 115232 115305   74  1  2   57   81     6 0.183  -2.64
 4.02 Intr + 116500 116680  181  1  1  113   62    71 0.074   6.87
 4.03 Intr + 123293 123340   48  1  0  104   98     1 0.027   1.58
 4.04 Intr + 130369 130471  103  0  1    6   79   117 0.063   2.35
 4.05 Intr + 135443 135506   64  0  1   95  100   -10 0.036  -1.32
 4.06 Intr + 135743 135956  214  2  1   66   95    90 0.067   6.22
 4.07 Intr + 137836 137885   50  0  2  149   64    16 0.472   2.78
 4.08 Intr + 140214 140382  169  0  1  -17   95   112 0.402   1.35
 4.09 Intr + 140878 140916   39  0  0   92   95    14 0.567   0.92
 4.10 Intr + 141736 141790   55  0  1   52   73    48 0.013  -1.75
 4.11 Intr + 148720 148786   67  2  1  119  105    30 0.883   5.76
 4.12 Intr + 151044 151087   44  0  2  123   97   -16 0.348   0.68
 4.13 Intr + 165076 165138   63  2  0  105  121     8 0.648   4.49
 4.14 Intr + 165267 165377  111  1  0  129   53    61 0.534   7.05
 4.15 Term + 174640 174713   74  2  2  131   51    55 0.622   4.17
 4.16 PlyA + 174915 174920    6                               1.05

 5.00 Prom + 176462 176501   40                              -7.26
 5.01 Init + 176505 176556   52  2  1   92   92    52 0.062   7.32
 5.02 Intr + 186175 186404  230  2  2   75   70   119 0.264   6.39
 5.03 Intr + 192196 192328  133  0  1   42   45    97 0.428   1.02
 5.04 Intr + 195999 196151  153  1  0   95  113    35 0.670   6.74
 5.05 Term + 196802 196905  104  0  2   33   46    83 0.516  -2.96
 5.06 PlyA + 197899 197904    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  54930  55034  105  2  0  107   49    86 0.886   5.01
S.002 Intr + 145624 145688   65  0  2   99   81    39 0.934   1.82
S.003 Intr + 145947 146086  140  0  2   48   80    94 0.970   4.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:184610901_184811821|GENSCAN_predicted_peptide_1|263_aa
MPGRRAVKPRFTIASLGLLAAAMTTTDHHHCHISVSTTITVSISTIAIFISTTLSVSTII
TTSTPATISISITIISTSTITSSSTVITMHRPCRLHHNHCFHLYYHHQLPPPPGQQSETL
PEKRKKKKEKEKGEEEEEEEEKEKKKKKRKKKKKKKKKKKKKKKRRRRRRRRRRRRRRRR
RRRGRKGSSSSSSSKMEGGGCGGVHVALDGSHENAPSDLLLLGVSSTKATAPKAMLPMGF
LPPKAEHSRGAKTGPILGDAGLL

>gi568815595r:184610901_184811821|GENSCAN_predicted_CDS_1|792_bp
atgccaggcaggagggctgtgaagcccagatttaccatcgctagcctgggtttgcttgct
gctgccatgaccaccaccgaccaccaccattgtcacatttccgtttctaccaccatcact
gtttccatctctaccatcgctatcttcatctcaaccaccctctctgtctccactattatc
accacctccacacccgccaccatcagcatctctatcaccatcatctccacctcaaccatc
acctccagctccaccgtcatcactatgcaccgcccctgccgcctccaccataaccactgc
ttccatctttactaccatcaccaactacctccgccacctgggcaacagagcgagactctg
cctgaaaaaagaaagaagaagaaggagaaggagaagggggaggaggaggaggaggaggag
gagaaggagaagaagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaggaagaaaaggaagcagcagcagcagcagcagcaagatggaaggcggaggt
tgcggtggtgtgcacgttgctttggatggcagccatgaaaatgccccatcagatctccta
ctgctgggagtgtcatcgaccaaggccacggctcctaaggccatgcttcccatgggcttc
ctgccacccaaggctgagcacagcaggggcgctaagacaggaccaatcttgggagatgca
gggctgctctga

>gi568815595r:184610901_184811821|GENSCAN_predicted_peptide_2|119_aa
MDMDSSRIPGCCLCNFESFSKRLHGIPTPLNLPLDPLVFNLQILALEIQESIRIHQHYVQ
NSYRGLNVHRAPREAVPGEGQIEFDIVVAREHPGRRFGFDYRRPGTGLLAMASSPELPA

>gi568815595r:184610901_184811821|GENSCAN_predicted_CDS_2|360_bp
atggacatggactcaagcagaatccctgggtgttgcctctgtaattttgaaagtttctcc
aagaggcttcatggtattcccactcccctcaacctgcccctggatccactggtcttcaat
ttgcagatcctagccctggagatccaagaatcaattcgaatccaccaacactatgttcag
aatagctaccgaggcctcaacgtgcatagggctcccagagaagctgtcccaggtgagggc
cagattgagtttgacatcgtcgttgccagagagcaccctggccgccgctttggttttgat
tacaggcggcccggcaccgggctactagccatggcctcttcacctgaactgccggcatga

>gi568815595r:184610901_184811821|GENSCAN_predicted_peptide_3|834_aa
MQQQGSGPQESLVQPLTFQQQPGHTPNPEGTGKGGAARGTRVAVLAEVAGSGPSRGRGLR
LRAAGSGCWRRCGRRFDSRAVRPSSHKAPAAIAPCTPAVTAAVQPLPRGLRGGSHTPRPV
YALCTCLPENMLQTPESRGLPVPQAEGEKDGGHDGETRAPTASQERPKEELGAGREEGAA
EPALTRKGARALAAKALARRRAYRRLNRTVAELVQFLLVKDKKKSPITRSEMVKYVIGDL
KILFPDIIARAAEHLRYVFGFELKQFDRKHHTYILINKLKPLEEEEEEDLGGDGPRLGLL
MMILGLIYMRGNSAREAQVWEMLRRLGVQPSKYHFLFGYPKRLIMEDFVQQRYLSYRRVP
HTNPPEYEFSWGPRSNLEISKMEVLGFVAKLHKKEPQHWPVQYREALADEADRARAKARA
EASMRARASARAGIHLCSVKTKSFSKTSLLREKVEENESRDYKHLSGEPEVQGVVKGSWF
LFHPKSGLLVSELRASSHSQWGQGVGELRLQDFGSSHRPPGPALPASEGVEETEDEGVRC
LVMVIMLLLECGSDAAPTSRPSSLSFRATVRFARPPSEWLQSCPVLVRGLPAEGSPETPL
ALKLLGAQQSAAQTRILMGPEASSPASQPAFGYSQTAQVKPGACVSSLRTGTSLYSRLIP
RGQQVHDTSKTSGNVCEMDSCTPSIPSLMDASIQHVIRVFPVTCTSPNDMGQVSDLTDVD
IPNQVVVHTHVFVHEPQIRSIKRKGFGVASTNLQASTCTGTLRDCEEDTQATLGRLDKST
YTFKLYLPTQGLEGLTLESVPGFCRKHLPGPRAPREQIHNVNCIWMKKQLEKAA

>gi568815595r:184610901_184811821|GENSCAN_predicted_CDS_3|2505_bp
atgcagcaacaaggcagtggtcctcaagaatcgctggtccagccactcaccttccagcag
cagcctgggcacacccccaacccagaagggaccggaaaaggaggggctgcgcgcggcact
agggtcgccgtcctggctgaggtggccggaagtggcccctcgcgcgggcgcggactgagg
ctgcgcgccgcaggttccggctgctggcggcgttgcggccgcaggtttgactcccgtgcg
gtgcggcccagcagccacaaagctcccgctgccattgctccttgtactcccgccgtcact
gccgctgtccaacccctcccccggggcttgcgcggcggctcccacacccctcggcccgtg
tacgcgctctgcacctgcctgcccgaaaacatgttgcagacaccagagagcagggggctc
ccggtcccgcaggccgagggggagaaggatggcggccatgatggtgagacccgggccccg
accgcctcgcaggagcgccccaaggaggagcttggcgccgggagggaggagggggctgcg
gagcccgccctcacccggaaaggcgcgagggccttggcggccaaagccttggcaaggcgc
agggcctaccgccggctgaatcggacggtggcggagttggtgcagttcctcctggtgaaa
gacaagaagaagagtcccatcacacgctcggagatggtgaaatacgttattggagacttg
aagattctgttcccggacatcatcgcaagggccgcagagcatctgcggtatgtctttggt
tttgagctgaaacagtttgaccgcaagcaccacacttacatcctgatcaacaaactaaaa
cctctggaggaggaggaggaggaggatctgggaggagatggccccagattgggtctgtta
atgatgatcctgggccttatctatatgagaggtaatagcgccagggaggcccaggtctgg
gagatgctgcgtcggttgggggtgcaaccctcaaagtatcatttcctctttgggtatccg
aagaggcttattatggaagattttgtgcagcagcgatatctcagttacaggcgggtgcct
cacaccaatccaccagaatatgaattctcttggggtccccgaagcaacctggaaatcagc
aagatggaagtcctggggttcgtggccaaactgcataagaaggaaccgcagcactggcca
gtgcagtaccgtgaggccctagcagacgaggccgacagggccagagccaaggccagagct
gaagccagtatgagggccagggccagtgctagggccggcatccacctctgctcagtgaaa
acgaagagtttctctaaaacatctttgctgagagagaaagtagaagaaaatgaatcaaga
gactataagcacttgagtggggagcccgaagtccagggtgttgtaaaaggctcctggttt
ctctttcaccccaagtctggcctactcgtgtctgagctgagagccagcagccacagccaa
tggggccagggagttggtgagctgcggctccaggactttggcagcagccacaggccccca
ggcccagcactgcctgcctcagaaggtgtggaggagacagaagatgaaggagtgcggtgt
ttagtaatggtgattatgctacttttagaatgtggatcggatgctgcccccacttcgcgg
ccatcatccttgtctttccgtgccactgtgcggtttgcccgtcctccttctgaatggctg
cagagctgtcctgtccttgttagaggcctgcctgcggagggcagccctgaaactcccctg
gctctgaaactgctcggcgcacagcagagcgcagcacagacccgaatccttatgggcccc
gaggctagctctccagcctctcagcctgcttttggatactctcaaacagcccaggtgaag
ccgggggcctgtgtgagctccttgagaacagggaccagtttatattcccgtctgatcccc
agaggccagcaggtgcatgacacctcgaagacctcaggaaatgtgtgcgaaatggactcc
tgtactccatccatcccatccttaatggacgcatccatccaacacgtgataagagtcttt
cccgtcacctgtaccagccccaatgatatgggccaggtgtcagacctcactgatgtggac
atcccaaaccaagtggttgtgcacacgcatgtatttgtgcatgagccacagatacgcagc
attaagaggaagggttttggtgtggccagcacgaatctccaggcctccacatgcacagga
acactgcgggactgtgaggaagacactcaggcaacacttggccgattagataaatccacc
tacacctttaagctgtacctccccacgcagggcctagaaggtctaacccttgaatcagtc
ccagggttctgccgcaaacatctgccagggccaagagcccccagggagcaaatacataat
gtgaactgcatttggatgaagaagcagttagagaaggcagcatga

>gi568815595r:184610901_184811821|GENSCAN_predicted_peptide_4|451_aa
MCPACLVPNFAGSILSVDGATISERRDLIRCPLGNGLALWPLPNKNVAEHSKTAESECEV
LIEFPNADCLLCISGDCMPVILHSLGESIPAVRGLGSGVQRLPSGAEKEAEASLVEESRQ
AGKSQQADVGLLQADSQESGMLWCSRPLSQVQLQGPRQGMRLGHKGQARGECPQLYDSLA
PHSGLDATSDSPTPVMHWNLLCRFAELDAHTYSQLSRFFPPFKGPVIMVRRDKLRVRNSS
LGMRSLFKTILVLSSVEPVETQSPSGMKGVNSESPVNSRHQIQKQRELISEAPSDAPPLQ
PAGGGLDWISLDCPQRERKCCGGSSFYAKRRGSSAEHQVLSWHPQKSRADDTESCFSVPP
EEPGLHSPQDYEQSDASPDVLVISCVSSTQGKEHPMATTLKHRNGTCESSSPHRELLPPN
LGERERGCRSPQEGPEPLGVEGFCGGTQIMD

>gi568815595r:184610901_184811821|GENSCAN_predicted_CDS_4|1356_bp
atgtgtccagcctgcttggttcccaactttgctggatccattctatctgtggacggagcc
actatctctgaaaggagagatctcatccgctgtccactggggaatggccttgccctatgg
cccctaccaaacaaaaacgtagcagaacacagcaaaacagcagagtcggaatgtgaagtg
ctgatagagttccctaacgctgactgtctgctctgcatttctggagattgtatgcctgtc
atcctgcattccttgggagaaagtatccctgctgtgagaggtctgggatctggagtacag
aggctcccatcgggagctgagaaagaagcagaggcctctttggtggaggaatcccggcag
gccggcaagtcccaacaggccgatgttgggctgctgcaggcagacagccaggagtctgga
atgctatggtgttccaggcccctgagtcaggtgcagctgcagggaccaaggcagggcatg
cgtctagggcataagggccaggccaggggagaatgtcctcagctgtatgactccctggct
ccacactctggccttgatgcaacttcagattctcctactccagtaatgcactggaacctg
ctttgtcgatttgctgaactcgatgcacacacctactctcaactcagtaggttcttccct
cccttcaaagggcctgtgatcatggtgagaagagacaagttgagagtcagaaacagcagc
ttagggatgcgcagtcttttcaaaaccattttggttctgagctcagtggagccagtggag
acccagtcaccatctggcatgaaaggtgttaactcggagtctccggtcaactctagacat
cagatccagaaacaaagagaattaatttcggaggccccctcagatgcccctcctctccag
cctgccggtggtggcctggactggatctcacttgactgtcctcaacgggaacggaagtgt
tgtggaggaagcagcttctacgctaagaggagaggcagctcagctgagcaccaggtcctg
agctggcacccacagaagagcagagcagatgacactgagagctgcttctctgtccctccg
gaagagcctgggctgcatagcccccaagactatgagcaatctgatgctagtcccgatgtc
ttggttatctcttgtgtatccagcacccaagggaaggagcatcccatggctacaactctc
aagcatcgaaatggaacctgtgagagttcttcaccccacagggaactccttccaccaaac
ttaggggagcgagaaaggggttgcagatctccccaagaagggcccgagcccctgggcgta
gaaggcttttgcggagggacacagattatggactga

>gi568815595r:184610901_184811821|GENSCAN_predicted_peptide_5|223_aa
MVLEPSVNELNYQKSLGVLPCDLAMPVSGTTVLNPPGPHGPPAGTVPIMAIHLLWPNALE
TPVKISSEVETEAGSGFLQPLSYPEIMTPSSFALPERQMILVDILQAVKCWRAYEQEDTG
LDTGLQCNSREDVRVSLLEHLEAMCLENSVTRWKETGFPRTEWRRELLLIFLVFIALTNA
VTFEQSPEEGTDGLLHQSATLVTADGPALTHHYIIIIHIYSLP

>gi568815595r:184610901_184811821|GENSCAN_predicted_CDS_5|672_bp
atggtgctagaaccttccgtcaatgaactcaattatcagaaaagcctgggagtcctcccc
tgtgaccttgctatgcctgtaagtggtaccaccgttcttaatcctcctggaccacacgga
ccacccgctggcacagtgcccataatggccatccacctgctgtggcctaatgctttggag
accccagtgaagatcagttctgaagttgagactgaggctgggtctggcttcctgcagccc
ttgtcctaccctgagatcatgaccccatcttcctttgcactgccagagagacagatgata
cttgtggacatcctgcaggctgttaaatgttggcgagcctacgaacaagaagacactggt
ctggacactggtctccagtgcaactccagagaggatgtgagggtatcattactggagcat
ttagaggccatgtgtttagaaaacagtgtcaccagatggaaagaaactgggttcccgaga
actgagtggagaagagaactgctcctcatcttccttgtatttattgccctgactaatgca
gtgacatttgagcaaagccctgaagaaggcacagatggtctcctccaccagagtgctaca
ttagttacagctgatggacctgcactgacacatcattacatcattatcatccacatctac
agtttaccttag