GENSCAN 1.0	Date run:  5-Nov-116	Time: 22:19:36

Sequence gi568815589f:126514450_126796448 : 281999 bp : 50.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4760   4856   97  0  1  104  101    43 0.612   6.27
 1.02 Intr +  12370  12442   73  1  1  105   75    30 0.231   2.81
 1.03 Intr +  17958  18015   58  2  1   85   91    17 0.094   0.16
 1.04 Intr +  42648  42767  120  1  0   -2   86   108 0.003   2.07
 1.05 Intr +  50462  50799  338  0  2   72   90    94 0.011   3.24
 1.06 Intr +  55354  55391   38  0  2   86   97    26 0.047   0.36
 1.07 Intr +  62190  62245   56  0  2   62  106    69 0.102   4.72
 1.08 Term +  68037  68128   92  1  2   73   49    92 0.378   1.68
 1.09 PlyA +  70668  70673    6                              -0.45

 2.03 PlyA -  70852  70847    6                               1.05
 2.02 Term -  71501  71394  108  2  0   53   35   105 0.303   0.21
 2.01 Init -  74527  74423  105  1  0   89   38   100 0.304   5.40
 2.00 Prom -  83612  83573   40                              -4.26

 3.00 Prom +  84846  84885   40                              -2.06
 3.01 Init +  98162  98288  127  1  1   75  105   125 0.921  11.22
 3.02 Intr +  99846 100139  294  1  0    7   92   275 0.606  16.78
 3.03 Term + 100670 101124  455  0  2  -32   47   544 0.865  33.62
 3.04 PlyA + 103580 103585    6                               1.05

 4.14 PlyA - 103597 103592    6                               1.05
 4.13 Term - 108954 108839  116  1  2   85   39   122 0.752   5.73
 4.12 Intr - 111517 111008  510  2  0   64   52   187 0.467   5.64
 4.11 Intr - 117766 117694   73  1  1   50  100    16 0.089  -2.02
 4.10 Intr - 129791 129664  128  0  2   68   76    76 0.449   4.80
 4.09 Intr - 130847 130734  114  0  0  134   78    -1 0.550   3.92
 4.08 Intr - 138325 138150  176  0  2  137   75   -26 0.470   0.58
 4.07 Intr - 140634 140508  127  1  1  130   73   -20 0.170   0.44
 4.06 Intr - 151847 151739  109  2  1  126   77    38 0.729   6.36
 4.05 Intr - 152309 152174  136  1  1  133   75    37 0.595   7.47
 4.04 Intr - 152958 152829  130  1  1   58   35    77 0.287  -0.85
 4.03 Intr - 157770 157623  148  0  1   93   36    78 0.417   2.91
 4.02 Intr - 162382 162231  152  2  2   99   78    39 0.634   3.88
 4.01 Init - 168878 168824   55  2  1   32   92   193 0.944  13.55
 4.00 Prom - 169412 169373   40                             -10.45

 5.00 Prom + 169806 169845   40                              -2.56
 5.01 Init + 170960 170967    8  1  2   67   68    10 0.232  -3.32
 5.02 Intr + 176387 176619  233  2  2  102   93   533 0.981  52.62
 5.03 Intr + 178672 178874  203  2  2   93  100   280 0.638  28.70
 5.04 Intr + 179075 179152   78  1  0   49  116    52 0.927   3.85
 5.05 Intr + 179297 179363   67  1  1   91   84   130 0.736  11.38
 5.06 Intr + 181390 181554  165  2  0   46  103   246 0.976  21.83
 5.07 Term + 181845 182002  158  1  2  110   54   288 0.999  25.70
 5.08 PlyA + 186563 186568    6                               1.05

 6.05 PlyA - 189075 189070    6                              -0.45
 6.04 Term - 191180 191007  174  2  0   51   42   111 0.048   0.56
 6.03 Intr - 192661 192565   97  0  1   77   94    23 0.029   1.81
 6.02 Intr - 202873 202753  121  2  1   71   87    71 0.133   4.85
 6.01 Init - 209133 209025  109  0  1   37   23   160 0.105   2.78
 6.00 Prom - 234260 234221   40                              -3.36

 7.05 PlyA - 234424 234419    6                               1.05
 7.04 Term - 241101 240851  251  1  2   63   44   136 0.439   2.57
 7.03 Intr - 244303 244146  158  0  2   85  110     0 0.056   1.55
 7.02 Intr - 263551 263458   94  2  1   72   99    61 0.364   4.62
 7.01 Intr - 265731 265630  102  1  0   93   77    47 0.574   4.25

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  50039  49970   70  2  1  100   71    70 0.917   7.71
S.002 Term + 228978 229042   65  1  2   67   54    98 0.849   2.35


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_1|290_aa
XTADNLSLLLEWRLIPANVAMSLFVKTDMEHNRAAAQDSRGSGRPLDTASFQGIESEGEP
ELVFWKMRTDALSARFESDQRIGKGKIHGPSEGPFASEAAPALHVEINHRQQGKIKDGLQ
VALGTQGHSEPAVAPDLKTSAQTLPPLPALQMLALGGRVDPQLHLLLQRPWQDVWVKSMV
APASHGLILRMMMAWPTVGPHSIGICPPPNPTISTALLGIMESEGPNWRVGHSEVAIPDR
SWHRMPTSDDASAVDGSRLLGLSPRMLENVYISRHPVDVYLHSLELTGDP

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_1|873_bp
nccaccgcggacaatttgtctctccttctcgagtggaggcttataccagccaatgtggct
atgtctctttttgtaaaaacagatatggagcataacagagctgctgcccaggacagccgg
ggctcagggagacctctggacactgcatccttccagggcatagagagtgagggtgagcct
gagcttgtcttctggaaaatgcggactgatgccctttctgcaaggtttgagagtgaccag
aggatcggcaaaggaaagattcatggaccatcagaagggccctttgcctccgaggccgcc
ccagcccttcacgtggagataaatcacaggcagcagggaaagataaaagatggcctgcag
gtggctctggggacacagggacattcagagcctgccgtggcccctgacctgaagacatca
gcccaaaccctcccacctctacctgcactgcagatgctggccctaggtggccgggtggac
ccccagctccacctcctactgcagaggccttggcaagatgtttgggtcaagtcaatggtg
gcgcctgcatcccatgggttgatattaagaatgatgatggcatggcccacagttggacct
cattcgattggcatatgcccaccccccaaccccaccatctccacagctctactgggaata
atggagtctgaaggacccaactggagggttgggcactcagaggtggccataccagatagg
tcttggcacaggatgcccaccagtgatgatgcctcagctgttgacggcagcagactcctg
ggactttctccacggatgttggagaatgtctacatctccaggcacccggttgatgtttac
ctacattctctggagctcacgggggacccctag

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_2|70_aa
MAATNPHGSTWPAVHVELLLPVDFLCSDDLGGNGKQLTTISHLKRRLARLPPPYELSGPF
ARLFGLILHP

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_2|213_bp
atggctgccactaatccacatggctccacttggcctgctgtccatgtggagctgctcctc
cctgtggacttcctgtgctctgatgaccttggaggaaacggcaagcagcttactaccatc
tctcacctgaaacggcggctggctcggctgcccccaccctacgagttgtctggtcccttt
gccaggctttttggcctcatcctacacccttaa

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_3|291_aa
MPSAPARLRAAASLREGPGPPRSGSRGVSPPLPRAATAPLLPARRRSTIAGGRRNPCPAG
AAPPRFQGRGGGERVDGPAGEQPGRRGPQRAPRPMDIATGPESLERCFPRGQTDCAKMLD
GIKMEEHALRPGPATLGVLLARILRRRGEHSAEPRLEARGLSTPEPEDWDGLAGAARPLA
RRSGERRRQAVIPGGPSPRGRGLWARCDRDAGAGPGGADGRAFALCATGSDCPHPAVCEG
CQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQ

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_3|876_bp
atgccctccgcccccgcccggctccgcgccgctgcctcgctccgggaggggccggggccg
ccccgcagcggatcgcggggggtcagcccgccgctaccccgggccgcaaccgcccccctg
ctccccgcgcgtcgccgctccacgatcgccgggggccggcgcaacccctgccctgcgggg
gccgcgcctccccggttccagggccgcggcggcggagagcgggtggacgggccggcgggc
gagcagcccggccggcggggtccgcagcgcgccccgcgtcccatggatatagcaacaggt
cccgagtcgctggagaggtgcttccctcgcgggcagacggactgcgccaagatgttggac
ggcatcaagatggaggagcacgccctgcgccccgggcccgccactctgggggtgctgctg
gcgcggattctccggagaaggggagagcacagcgccgagccaaggctcgaggcccgcggc
ctctccacgccggagcccgaggactgggacggactagccggggccgcccggcccctggcg
cggcggtccggggagcgcaggcggcaggcggtgatcccgggcggcccgagccctcggggc
cgagggctgtgggcccggtgcgaccgggacgccggggctgggccgggcggcgctgacggc
cgggctttcgccctgtgcgctacaggctccgactgcccgcatcccgccgtctgcgagggc
tgccagcggcccatctccgaccgcttcctgatgcgagtcaacgagtcgtcctggcacgag
gagtgtttgcagtgcgcggcgtgtcagcaagccctcaccaccagctgctacttccgggat
cggaaactgtactgcaaacaagactaccaacagtaa

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_4|657_aa
MRRPRAGRAAAGAAGGGPAVLPAFTQRQLCASPPYGDLRTPPLVTPKGLKGLCQHPHFAD
EQTEAQRGERVLLSALLKVTSQYWASQDGLQQTGPRDLNPVLPTPELETFTPCGVASLSK
HWQLPKGLSVGKWVHKSKFTHSLDCYVVAARYSKSACTDVRRMKIKLHHGLLRSLQSLST
YTQQDRAALTTQCVISVQHIEHAYVKHGCQLNAFHPSRLDSMGTSFREPACSQHLPVGCP
PGGGVHEEDPNTTAPFHRVKGLAPGHNRKQQTQDWVSQLWGMGVWQLQVLHSGDRTWVGL
AGTPIMWTPSSAQSSPGPDLSPFFLLCRGQMYSVPIHTHTQSRTGLTRPRGDASERVCQG
SSAEFWRKVPIWSGVWERWSLGAAELMGETLQPGKRLQQIPPGGGTGHRGPGETSAGPPA
PLPGRKNGSHGLVWLFEHSISSRSPHNLEAGAVTRNSAAASPTPAAPHCAEASATAKAQA
SAPAAPAGVLLVRAGSGAQARRRRRRASRQTGLGLCGQSAAGKPCKRWDEGGGGGGGGGE
KGATGLAEKRVSVGVEQRNSPSEERGRACSREWPTLETCRSASAATLVPGIQRNLPRRGP
QPGISIRPLSSGQSRFNGGEALLQAASLFSKALLLQVHIYTDHAQESLGKNGTYVSQ

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_4|1974_bp
atgcggcggccgcgggccgggcgggcggcggcgggagccgcgggcgggggccccgcagtt
ctcccagcatttacccagcgccaactgtgcgcaagtcctccctatggggatctgcggacc
ccacccctggtaactccgaaaggtctgaaaggtctctgccaacacccccattttgctgat
gagcaaactgaggctcagagaggggagagggtactactgagtgccttgctcaaggtcacc
agccagtactgggccagccaggatggcctccagcagacaggcccaagggatttgaacccg
gtccttccaactccagagctggagaccttcaccccttgtggtgtggcctccctatcaaag
cactggcagctgcccaaagggctgtcagtagggaaatgggttcataaatcaaagttcacc
cattccctggactgttacgtcgtggctgcaagatacagcaaatctgcgtgtactgatgtg
cgcagaatgaaaatcaaactgcatcacggcctgctcagaagtcttcagagtctctccact
tacacgcaacaggacagggcagccctgactacccagtgtgttatcagcgtacagcacata
gaacatgcgtacgtaaagcacggctgtcagctgaatgcttttcatccttccaggctggat
tcgatgggcacttccttcagggagcctgcctgctcccagcatcttccagtgggctgcccc
ccaggaggtggagtgcatgaggaagatcctaacaccaccgccccatttcacagggtaaag
ggacttgccccaggtcacaacaggaagcaacagacccaggactgggtgtcacagctgtgg
gggatgggggtatggcagctccaggtacttcactctggagacaggacatgggtgggattg
gcagggacccccatcatgtggacgccaagcagtgcccagtccagtccaggcccagatctg
agtcccttctttctcctgtgccgagggcagatgtactctgtgcccatccacacacacaca
cagtcacgcacagggctgactaggcccaggggagatgccagtgaacgggtctgccaggga
tcaagtgcagagttctggagaaaggtgcccatctggagtggtgtctgggagaggtggtct
ctgggagctgctgagctgatgggggagactctccagcctgggaaacgacttcagcagata
ccccccggtgggggcacaggacaccgaggacccggagagaccagcgcgggcccaccagcc
ccgttacctggcaggaaaaacggctcccatggactggtatggctctttgaacacagcatc
tcatctcgctctccccacaacctggaagccggtgcagtgacccggaacagcgcggccgct
tctccgacgcccgcggctccccactgcgccgaggcgagcgccacggctaaagcccaagcc
tcggcgcccgctgcgcctgccggagttctgcttgtccgagcaggcagcggggctcaggca
cggcggcgacgtcgaagggccagtcggcagacagggctgggtctctgcggccagagcgcc
gcaggaaagccctgcaaacggtgggacgagggtggcggcggcggcggcggaggtggcgag
aaaggcgccacgggcctggcggagaagagggtttccgtgggggtggaacaaaggaattca
ccctcggaagaaaggggccgagcatgcagccgggaatggccaaccctggagacctgcagg
agtgcgagcgctgcgacattagtcccagggatccaacgaaatctgccccgccgagggccc
cagcctggcatctccattcggcctctctcttctggtcaatcccgctttaatgggggtgag
gcactactgcaggctgcctccctgttcagtaaggcgctgctcctgcaagttcacatctac
actgaccatgctcaggagtctcttggaaaaaatgggacctacgtgtctcagtag

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_5|303_aa
MKRLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCK
GDYEKEKDLLSSVSPDESDSGRVVSPTVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRP
KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR
RHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTP
PQMPGDHMNPYGNDSIFHDIDSDTSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSY
FAS

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_5|912_bp
atgaagaggctcttcgcggccaagtgcagcggctgcatggagaagatcgcccccaccgag
ttcgtgatgcgggcgctggagtgcgtgtaccacctgggctgcttctgctgctgcgtgtgt
gaacggcagctacgcaagggcgacgaattcgtgctcaaggagggccagctgctgtgcaag
ggtgactacgagaaggagaaggacctgctcagctccgtgagccccgacgagtccgactcc
ggccgggttgtgtcccccacagtgaagagcgaggatgaagatggggacatgaagccggcc
aaggggcagggcagtcagagcaagggcagcggggatgacgggaaggacccgcggaggccc
aagcgaccccggaccatcctcaccacgcagcagcgaagagccttcaaggcctccttcgag
gtctcgtcgaagccttgccgaaaggtccgagagacactggcagctgagacgggcctcagt
gtgcgcgtggtccaggtctggtttcagaaccaaagagcaaagatgaagaagctggcgcgg
cggcaccagcagcagcaggagcagcagaactcccagcggctgggccaggaggtcctgtcc
agccgcatggagggcatgatggcttcctacacgccgctggccccaccacagcagcagatc
gtggccatggaacagagcccctacggcagcagcgaccccttccagcagggcctcacgccg
ccccaaatgccaggtgaccacatgaacccctatgggaacgactccatcttccatgacatc
gacagcgatacctccttaaccagcctcagcgactgcttcctcggctcctcagacgtgggc
tccctgcaggcccgcgtggggaaccccatcgaccggctctactccatgcagagttcctac
ttcgcctcctga

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_6|166_aa
MRGGRRVSAPVAGSPAAACVAAERCFWEGRQVPGLGAKRNVVGGQGDNKEKVSNKHVSKR
IYVIMKFKGRYYDWTCTKSLDNILLDAICRKNVSKAMPPLKYRLKIRAQGCVGESAVSSV
SSAHAVRGSQKPLRRRRPRSCLLWPRSGASSVPAAPQRSAGHVGYT

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_6|501_bp
atgcgtggggggcgccgcgtgagtgcgccggtggctgggagtccggcggccgcgtgtgtg
gcagcggagcggtgtttctgggaggggcgccaggttccggggctgggggcaaaaaggaat
gtagtaggaggacagggtgataataaggagaaggtcagcaacaaacatgtgagcaaaaga
atctacgtcataatgaagttcaagggaaggtactatgactggacgtgcacgaaatctctt
gacaatatcctgttggatgcaatttgcagaaaaaatgtctccaaagcaatgcctcctctt
aaatacaggctcaaaatccgtgcacagggttgcgtgggggaatccgcggtgtcctcggtg
agcagcgcccacgcagtgcggggctcacagaagcctctgcggaggcggcgtcctcgctcc
tgccttctttggccacgatcaggagcctcctcagtccccgccgcccctcagcgctccgcc
ggccacgtgggctacacctga

>gi568815589f:126514450_126796448|GENSCAN_predicted_peptide_7|201_aa
XNQEDCKRGLRTGAQTKSTTFLFFVARFDFLKRGAQPGHPGTLWGSENTFLWDGLEVVLL
QPVQDRMEERQMTLAASYPEATWNTYISLSKLDLMAIPVAKEPGRKITAFWPIVDGGKEL
GEGFDSTQRPFPQRPRAPQSRPCSSKAPAGQHPPELRCEVRNGPPKLLLPLLLPDIPHVQ
CVIFYDRSYIRHNQIYGSCIL

>gi568815589f:126514450_126796448|GENSCAN_predicted_CDS_7|606_bp
nacaaccaagaagattgcaaacgggggctcaggacaggagcccaaaccaaatcaaccaca
ttcctgttttttgttgcacgtttcgacttcctgaagagaggtgcccaaccaggtcatcca
ggcacactgtggggttctgaaaatacatttctctgggatggcctggaggtggtgctgctg
cagccggtccaggacaggatggaggaaaggcagatgacactagctgcttcttacccagaa
gccacctggaatacttacatttcattgtcaaaactggatctcatggctatcccagttgca
aaagagcctgggagaaaaataacagctttctggcctatagtggatggtggcaaggagctt
ggggaaggttttgactcgacacagcggcccttccctcagaggcccagggccccacagagc
aggccctgctcctccaaagcacctgccggccagcacccaccggaattgcggtgcgaggtt
cggaacgggccccccaagctgctcctgcccctgctgcttcccgacatcccccatgttcaa
tgcgtgattttttacgatcgatcttatatccggcacaatcagatttatggctcctgcatc
ttatga