Result of FASTA (omim) for pF1KE0061
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0061, 937 aa
  1>>>pF1KE0061 937 - 937 aa - 937 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6970+/-0.000438; mu= 10.7230+/- 0.027
 mean_var=157.4435+/-32.182, 0's: 0 Z-trim(115.9): 407  B-trim: 450 in 1/52
 Lambda= 0.102214
 statistics sampled from 26247 (26660) to 26247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.313), width:  16
 Scan time: 14.330

The best scores are:                                      opt bits E(85289)
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 6164 921.9       0
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 5119 767.7       0
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 5007 751.3 5.3e-216
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 4884 733.1 1.5e-210
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 4505 677.2  1e-193
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 4486 674.4 6.5e-193
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 4239 638.0 6.6e-182
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 4220 635.2  4e-181
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 4100 617.5 9.8e-176
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 4076 613.9  1e-174
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 4015 605.0 5.8e-172
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 3991 601.4 6.7e-171
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 3989 601.1 8.3e-171
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 3987 600.8 8.9e-171
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3971 598.4 4.6e-170
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 3967 597.9 6.9e-170
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 3962 597.1 1.2e-169
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 3956 596.3 2.4e-169
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 3940 593.9 1.1e-168
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 3939 593.8 1.4e-168
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 3931 592.5 2.8e-168
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 3929 592.3 3.8e-168
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 3927 592.0 4.1e-168
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 3911 589.6 2.4e-167
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 3909 589.3 2.6e-167
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3901 588.1 6.1e-167
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3867 583.1 1.9e-165
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 2584 393.9 1.5e-108
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2564 390.9 1.2e-107
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2546 388.3 7.3e-107
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 2006 308.7 8.2e-83
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 2006 308.7 8.7e-83
NP_114476 (OMIM: 606294) protocadherin gamma-A7 is ( 817) 1957 301.5 1.2e-80
NP_061743 (OMIM: 606294) protocadherin gamma-A7 is ( 932) 1957 301.5 1.3e-80
NP_115783 (OMIM: 606306) protocadherin gamma-C5 is ( 878) 1947 300.0 3.4e-80
NP_061752 (OMIM: 606306) protocadherin gamma-C5 is ( 944) 1947 300.0 3.6e-80
NP_115266 (OMIM: 606299) protocadherin gamma-B1 is ( 810) 1936 298.4   1e-79
NP_061745 (OMIM: 606299) protocadherin gamma-B1 is ( 927) 1936 298.4 1.1e-79
NP_114398 (OMIM: 606289) protocadherin gamma-A2 is ( 823) 1927 297.0 2.5e-79
NP_061738 (OMIM: 606289) protocadherin gamma-A2 is ( 932) 1927 297.1 2.8e-79
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1919 295.8 5.7e-79
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1919 295.9 5.9e-79
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1919 295.9 6.3e-79
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1919 295.9 6.3e-79
NP_114089 (OMIM: 606321) protocadherin alpha-C2 is ( 884) 1916 295.4 8.2e-79
NP_114442 (OMIM: 606291) protocadherin gamma-A4 is ( 851) 1894 292.2 7.6e-78
NP_061740 (OMIM: 606291) protocadherin gamma-A4 is ( 962) 1894 292.2 8.3e-78
NP_061758 (OMIM: 606341) protocadherin beta-15 pre ( 787) 1892 291.9 8.7e-78
NP_061746 (OMIM: 606300) protocadherin gamma-B2 is ( 931) 1889 291.5 1.4e-77
NP_115268 (OMIM: 606301) protocadherin gamma-B3 is ( 814) 1884 290.7   2e-77


>>NP_061733 (OMIM: 606313) protocadherin alpha-7 isoform  (937 aa)
 initn: 6164 init1: 6164 opt: 6164  Z-score: 4921.0  bits: 921.9 E(85289):    0
Smith-Waterman score: 6164; 100.0% identity (100.0% similar) in 937 aa overlap (1-937:1-937)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
              850       860       870       880       890       900

              910       920       930       
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::
NP_061 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       

>>NP_114040 (OMIM: 606313) protocadherin alpha-7 isoform  (789 aa)
 initn: 5119 init1: 5119 opt: 5119  Z-score: 4089.3  bits: 767.7 E(85289):    0
Smith-Waterman score: 5119; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       :::::                                                       
NP_114 SSTDNVSHK                                                   
                                                                   

>>NP_061731 (OMIM: 606311) protocadherin alpha-5 isoform  (936 aa)
 initn: 5007 init1: 5007 opt: 5007  Z-score: 3998.9  bits: 751.3 E(85289): 5.3e-216
Smith-Waterman score: 5007; 82.7% identity (91.9% similar) in 927 aa overlap (11-937:10-936)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
                 : .:::. ..:: :.:: ::::::.:::::::.:::::::::::::::::
NP_061  MVYSRRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : :::::::::::::::::::::::::: : :::::::::::.::::::::.
NP_061 PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       : ::::::::: :   .. ::: :::  ::::::::::: ::: :: : :::.::::: :
NP_061 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       :: :...... : ::::: :::::: : .::. :::::::::::::::::.::: :::::
NP_061 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
        ::...:.:.: ::.  :::::. :::: :::.: .:.: ::. :  :.:::: ..  .:
NP_061 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : : :..:.:.  ...: ..:.::.  ::.::: :.:...:::::.:....:.: ::. 
NP_061 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  .:::.:::: ::: :.:::::::: :.:::::::::::::::::::::::::::.
NP_061 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::: ::::::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.:::::::::: :::::::::::::::::::: :
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       :::::::::::::. ..: ::::::::::::::::.::::.:::::::::::::::: ::
NP_061 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::: : .:::. ::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .:..:.  ::::.:::::::::.::::::::::::.:::::::::::::::::
NP_061 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP
     720       730       740       750       760       770         

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
     780       790       800       810       820       830         

              850       860       870       880       890       900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
     840       850       860       870       880       890         

              910       920       930       
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::
NP_061 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930      

>>NP_061726 (OMIM: 606318) protocadherin alpha-12 isofor  (941 aa)
 initn: 3862 init1: 3862 opt: 4884  Z-score: 3900.9  bits: 733.1 E(85289): 1.5e-210
Smith-Waterman score: 4884; 80.7% identity (90.6% similar) in 942 aa overlap (1-937:3-941)

                 10        20        30        40        50        
pF1KE0   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAE
         .. : :  ::...::: ...:::::.: ::::::: ::::::.:::::::::::::::
NP_061 MVIIGPRG--PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAE
                 10        20        30        40        50        

       60        70        80        90       100       110        
pF1KE0 LVPRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFH
       :::::::.. : .::::::::::::::::::::::.::::::::::::::::.:::::::
NP_061 LVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFH
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KE0 VDVEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYF
       :::::::::::::::   .... ..:: ::::.:::::::::::: :.:::: :: :: :
NP_061 VDVEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENF
      120       130       140       150       160       170        

      180        190       200       210       220       230       
pF1KE0 FLDVPTS-NQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNND
        : . :. .... :  ::::::::::.::.:.::: . :::::::::.::. ::::: ::
NP_061 ELKIKTKKDKSILPE-LVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVND
      180       190        200       210       220       230       

       240       250       260       270       280       290       
pF1KE0 NAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDP
       :.:.::.  : : : :::.  : ::. :::: ::::::.: :...  .  . :  : ..:
NP_061 NGPAFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINP
       240       250       260       270       280       290       

       300       310       320       330       340       350       
pF1KE0 LSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSL
        .: : . :..::::. :..: :.:.:::.: .:::  :::::.:::::.:.. .:::::
NP_061 DTGEIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSL
       300       310       320       330       340       350       

       360       370       380       390       400       410       
pF1KE0 PIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRES
       :. :::: ::::.:::: ::: :.:::: :::::.::::::::.::::::::::::::::
NP_061 PVQEDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRES
       360       370       380       390       400       410       

       420       430       440       450       460       470       
pF1KE0 VSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
NP_061 VSAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       420       430       440       450       460       470       

       480       490       500       510       520       530       
pF1KE0 SAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       :: :::::::::::::::: ::::.:::::::::::::::::::::::::::::::::::
NP_061 SAWDADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       480       490       500       510       520       530       

       540       550       560       570       580       590       
pF1KE0 RDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAV
       ::::::::::::::::::::::::::::::  .:..:::: :::::::::::::::::::
NP_061 RDAGVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAV
       540       550       560       570       580       590       

       600       610       620       630       640       650       
pF1KE0 DADSGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEP
       ::::::::::::::::.:.:: :::.:::::::::::: :::.:::::::::::::::::
NP_061 DADSGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEP
       600       610       620       630       640       650       

       660       670       680       690       700       710       
pF1KE0 SLTATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLL
       .::.::::::::::.:::::.:::::.: . ::. :::.:::::::::::::::::::::
NP_061 ALTSTATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLL
       660       670       680       690       700       710       

       720       730       740       750       760       770       
pF1KE0 YTALRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLP
       ::::::::: . . :.  ::::::::::::::.::::::::::.:.::::::::::::: 
NP_061 YTALRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQ
       720       730       740       750       760       770       

       780           790       800       810       820       830   
pF1KE0 QGPSSTDNP----RQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
        .  .  ::    :::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LSREDCLNPPSEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
       780       790       800       810       820       830       

           840       850       860       870       880       890   
pF1KE0 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
       840       850       860       870       880       890       

           900       910       920       930       
pF1KE0 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::
NP_061 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       900       910       920       930       940 

>>NP_114063 (OMIM: 606315) protocadherin alpha-9 isoform  (950 aa)
 initn: 4485 init1: 4485 opt: 4505  Z-score: 3598.8  bits: 677.2 E(85289): 1e-193
Smith-Waterman score: 5493; 90.1% identity (94.6% similar) in 943 aa overlap (8-937:8-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :: :. ::: ..::: : .: :::::::::::.::.:::::::::::::::::
NP_114 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::.   : ::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_114 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       :::::::::::::::::::::::::::::::::::.:::::::::::::::. .::.:. 
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::: ::::.::::.: :  .::::::::::.::::::::.::::::::: :::::::::
NP_114 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::::: 
NP_114 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :.:::.:::::::::::::::::::::::::::::::::::::
NP_114 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.::. :: ::: :.: :::::: ::.::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: .:.:::::::::::::::::::::::::::.::::::::::::.::
NP_114 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::.:::::.: .:::. :::::::::::::::::::::::::::.
NP_114 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
              670       680       690       700       710       720

              730       740       750       760       770          
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL----
       :::::  .:: :.  ::::::::::::::.:::::::::::::  :::::::::.:    
NP_114 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA
              730       740       750       760       770       780

                780        790       800       810       820       
pF1KE0 --------PQGPS-STDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
               :.. : :: .::::::::::::::::::::::::::::::::::::::::::
NP_114 GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_054724 (OMIM: 606315) protocadherin alpha-9 isoform  (842 aa)
 initn: 4921 init1: 4477 opt: 4486  Z-score: 3584.4  bits: 674.4 E(85289): 6.5e-193
Smith-Waterman score: 4486; 87.6% identity (94.0% similar) in 798 aa overlap (8-805:8-803)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :: :. ::: ..::: : .: :::::::::::.::.:::::::::::::::::
NP_054 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::.   : ::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_054 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_054 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       :::::::::::::::::::::::::::::::::::.:::::::::::::::. .::.:. 
NP_054 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::: ::::.::::.: :  .::::::::::.::::::::.::::::::: :::::::::
NP_054 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::::: 
NP_054 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :.:::.:::::::::::::::::::::::::::::::::::::
NP_054 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.::. :: ::: :.: :::::: ::.::::::::
NP_054 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: .:.:::::::::::::::::::::::::::.::::::::::::.::
NP_054 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::.:::::.: .:::. :::::::::::::::::::::::::::.
NP_054 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .:: :.  ::::::::::::::.:::::::::::::  :::::::::.:  .:
NP_054 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGL--SP
              730       740       750       760       770          

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
        . .. :  .:.   ... ..:. :                                   
NP_054 CAGSTERTGEPSASSDSTGKVGFSSILFIYIIFFLERYYRLLPGAVQIVLFIFLEIQQIF
      780       790       800       810       820       830        

>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform  (947 aa)
 initn: 4219 init1: 4219 opt: 4239  Z-score: 3386.8  bits: 638.0 E(85289): 6.6e-182
Smith-Waterman score: 5235; 85.7% identity (92.8% similar) in 942 aa overlap (6-937:6-947)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
            :    .:.:::....::::::: ::::::: ::::::.:::::::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : :: ::::::::::::::::::::::: :::::::::::::.:::::::::
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::.:::::::::::::.:: ::::::::::::::::::::::::::::::::::::: :
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       . : ... :: :::.::: :::::.::. :.::::::::::::::::::::::: :::::
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .::::.: :.: :::  :::::. :::::::::::::.::::.:.::..:::::.::..:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : : :..:::::....: ::..:::  ::.::: :.::: : :::.:.: . :::::: 
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  ::::.:::: :.:.:::: :::::: .::::::::::::::::::::::::::::
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::::::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::::::.::::::: :::: :::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::::::::::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::: .: .::.. ::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .::::.  ::::::::::::::.::::: :::::::::::::::::::::.. 
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
              730       740       750       760       770       780

                        790       800       810       820       830
pF1KE0 SSTDN----------PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
       .  :.          :::::::::::::::::::::::::::::::::::::::::::::
NP_061 DREDQLQTTEESFAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
              790       800       810       820       830       840

              840       850       860       870       880       890
pF1KE0 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
              850       860       870       880       890       900

              900       910       920       930       
pF1KE0 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       

>>NP_113688 (OMIM: 606310) protocadherin alpha-4 isoform  (798 aa)
 initn: 4216 init1: 4216 opt: 4220  Z-score: 3372.7  bits: 635.2 E(85289): 4e-181
Smith-Waterman score: 4220; 84.1% identity (92.6% similar) in 779 aa overlap (6-784:6-784)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
            :    .:.:::....::::::: ::::::: ::::::.:::::::::::::::::
NP_113 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : :: ::::::::::::::::::::::: :::::::::::::.:::::::::
NP_113 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::.:::::::::::::.:: ::::::::::::::::::::::::::::::::::::: :
NP_113 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       . : ... :: :::.::: :::::.::. :.::::::::::::::::::::::: :::::
NP_113 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .::::.: :.: :::  :::::. :::::::::::::.::::.:.::..:::::.::..:
NP_113 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : : :..:::::....: ::..:::  ::.::: :.::: : :::.:.: . :::::: 
NP_113 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  ::::.:::: :.:.:::: :::::: .::::::::::::::::::::::::::::
NP_113 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_113 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::::::::::::::::::::::::::::::::.::::
NP_113 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::::::.::::::: :::: :::.:::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::::::::::::::::::::.::
NP_113 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::: .: .::.. ::::::::::::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .::::.  ::::::::::::::.::::: :::::::::::::::::::::.. 
NP_113 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       .  :                                                        
NP_113 DREDQLQTTEESFAKVSV                                          
              790                                                  

>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform  (950 aa)
 initn: 4078 init1: 4078 opt: 4100  Z-score: 3276.0  bits: 617.5 E(85289): 9.8e-176
Smith-Waterman score: 5074; 82.9% identity (91.4% similar) in 943 aa overlap (8-937:8-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :::.. ::: ...::: :.: ::::::: ::::::.:::::::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::: :::: . .::::.:::   ::: :::::::::: :.:::: :. .::: :
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::  .....: :::::.: :.::.::. .::.:: ::::::::::.:: ::::: :::::
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .:.::.: :.: ::.  ::::.  ::.:::::.: :: :::..:.: :: ::::.::..:
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        :.: :..:::::....: :::.::: ::.. :::::.:.::.:::.:.:.. :::::. 
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::.  .:::.:::: ::: ::::::::::::.::::::::::::::::::: ::::::::
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       :::::::::::::::::::::::::::::::::::.: ::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: ::::: :::: ::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::.::::::::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::.:: : .:::. :::::::::.::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::: .:: :.  ::::::::::::::.::::.:::::::: :::::::::::::  :
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

                           790       800       810       820       
pF1KE0 SSTD-------------NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
        : :             .::::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_113685 (OMIM: 606309) protocadherin alpha-3 isoform  (824 aa)
 initn: 4522 init1: 4076 opt: 4076  Z-score: 3257.8  bits: 613.9 E(85289): 1e-174
Smith-Waterman score: 4076; 79.9% identity (90.5% similar) in 792 aa overlap (8-799:8-799)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :::.. ::: ...::: :.: ::::::: ::::::.:::::::::::::::::
NP_113 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
NP_113 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::: :::: . .::::.:::   ::: :::::::::: :.:::: :. .::: :
NP_113 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::  .....: :::::.: :.::.::. .::.:: ::::::::::.:: ::::: :::::
NP_113 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .:.::.: :.: ::.  ::::.  ::.:::::.: :: :::..:.: :: ::::.::..:
NP_113 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        :.: :..:::::....: :::.::: ::.. :::::.:.::.:::.:.:.. :::::. 
NP_113 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::.  .:::.:::: ::: ::::::::::::.::::::::::::::::::: ::::::::
NP_113 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       :::::::::::::::::::::::::::::::::::.: ::::::::::::::::::::: 
NP_113 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_113 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: ::::: :::: ::::::::::::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::.::::::::::::::::::::
NP_113 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::.:: : .:::. :::::::::.::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::: .:: :.  ::::::::::::::.::::.:::::::: :::::::::::::  :
NP_113 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
        : :  .. . :   ::..                                         
NP_113 ISRDREEKQDVDVDLSAKVSNFYLFFPKCLCFSFLNVSTPLEIH                
              790       800       810       820                    




937 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:24:01 2016 done: Fri Nov  4 05:24:03 2016
 Total Scan time: 14.330 Total Display time:  0.360

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com