Result of FASTA (ccds) for pF1KE0061
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0061, 937 aa
  1>>>pF1KE0061 937 - 937 aa - 937 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2450+/- 0.001; mu= 13.3080+/- 0.060
 mean_var=143.5735+/-28.408, 0's: 0 Z-trim(108.8): 192  B-trim: 105 in 2/50
 Lambda= 0.107038
 statistics sampled from 10284 (10478) to 10284 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.322), width:  16
 Scan time:  4.970

The best scores are:                                      opt bits E(32554)
CCDS54918.1 PCDHA7 gene_id:56141|Hs108|chr5        ( 937) 6164 964.4       0
CCDS54917.1 PCDHA5 gene_id:56143|Hs108|chr5        ( 936) 5007 785.7       0
CCDS47285.1 PCDHA12 gene_id:56137|Hs108|chr5       ( 941) 4884 766.7       0
CCDS54920.1 PCDHA9 gene_id:9752|Hs108|chr5         ( 950) 4505 708.2 1.9e-203
CCDS54916.1 PCDHA4 gene_id:56144|Hs108|chr5        ( 947) 4239 667.1 4.4e-191
CCDS54915.1 PCDHA3 gene_id:56145|Hs108|chr5        ( 950) 4100 645.6 1.3e-184
CCDS4240.1 PCDHA13 gene_id:56136|Hs108|chr5        ( 950) 4015 632.5 1.1e-180
CCDS54913.1 PCDHA1 gene_id:56147|Hs108|chr5        ( 950) 3991 628.8 1.5e-179
CCDS47281.1 PCDHA6 gene_id:56142|Hs108|chr5        ( 950) 3989 628.5 1.8e-179
CCDS54919.1 PCDHA8 gene_id:56140|Hs108|chr5        ( 950) 3956 623.4 6.3e-178
CCDS54914.1 PCDHA2 gene_id:56146|Hs108|chr5        ( 948) 3939 620.8 3.9e-177
CCDS47284.1 PCDHA11 gene_id:56138|Hs108|chr5       ( 949) 3929 619.2 1.1e-176
CCDS64269.1 PCDHA2 gene_id:56146|Hs108|chr5        ( 808) 3927 618.9 1.2e-176
CCDS54921.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 948) 3911 616.5 7.8e-176
CCDS75326.1 PCDHA11 gene_id:56138|Hs108|chr5       ( 810) 3909 616.1 8.5e-176
CCDS75325.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 844) 3901 614.9 2.1e-175
CCDS75327.1 PCDHA12 gene_id:56137|Hs108|chr5       ( 792) 3867 609.6 7.5e-174
CCDS54912.1 PCDHA1 gene_id:56147|Hs108|chr5        ( 686) 2584 411.4 2.9e-114
CCDS34255.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 685) 2564 408.3 2.5e-113
CCDS47282.1 PCDHA6 gene_id:56142|Hs108|chr5        ( 686) 2546 405.6 1.7e-112
CCDS75348.1 PCDHGC3 gene_id:5098|Hs108|chr5        ( 863) 2006 322.2 2.6e-87
CCDS4261.1 PCDHGC3 gene_id:5098|Hs108|chr5         ( 934) 2006 322.3 2.8e-87
CCDS75336.1 PCDHGA7 gene_id:56108|Hs108|chr5       ( 817) 1957 314.7 4.7e-85
CCDS54927.1 PCDHGA7 gene_id:56108|Hs108|chr5       ( 932) 1957 314.7 5.2e-85
CCDS75350.1 PCDHGC5 gene_id:56097|Hs108|chr5       ( 878) 1947 313.1 1.5e-84
CCDS4263.1 PCDHGC5 gene_id:56097|Hs108|chr5        ( 944) 1947 313.2 1.5e-84
CCDS75330.1 PCDHGB1 gene_id:56104|Hs108|chr5       ( 810) 1936 311.4 4.4e-84
CCDS54923.1 PCDHGB1 gene_id:56104|Hs108|chr5       ( 927) 1936 311.5 4.9e-84
CCDS47289.1 PCDHGA2 gene_id:56113|Hs108|chr5       ( 932) 1927 310.1 1.3e-83
CCDS75346.1 PCDHGA12 gene_id:26025|Hs108|chr5      ( 820) 1919 308.8 2.8e-83
CCDS75343.1 PCDHGA10 gene_id:56106|Hs108|chr5      ( 850) 1919 308.8 2.8e-83
CCDS4260.1 PCDHGA12 gene_id:26025|Hs108|chr5       ( 932) 1919 308.8 3.1e-83
CCDS47292.1 PCDHGA10 gene_id:56106|Hs108|chr5      ( 936) 1919 308.8 3.1e-83
CCDS75331.1 PCDHGA4 gene_id:56111|Hs108|chr5       ( 851) 1894 304.9 4.1e-82
CCDS58979.2 PCDHGA4 gene_id:56111|Hs108|chr5       ( 962) 1894 305.0 4.5e-82
CCDS4257.1 PCDHB15 gene_id:56121|Hs108|chr5        ( 787) 1892 304.6 4.8e-82
CCDS54924.1 PCDHGB2 gene_id:56103|Hs108|chr5       ( 931) 1889 304.2 7.6e-82
CCDS75334.1 PCDHGB3 gene_id:56102|Hs108|chr5       ( 814) 1884 303.4 1.2e-81
CCDS58980.1 PCDHGB3 gene_id:56102|Hs108|chr5       ( 929) 1884 303.4 1.3e-81
CCDS75335.1 PCDHGA6 gene_id:56109|Hs108|chr5       ( 818) 1882 303.1 1.4e-81
CCDS54926.1 PCDHGA6 gene_id:56109|Hs108|chr5       ( 932) 1882 303.1 1.6e-81
CCDS75345.1 PCDHGA11 gene_id:56105|Hs108|chr5      ( 837) 1881 302.9 1.6e-81
CCDS47294.1 PCDHGA11 gene_id:56105|Hs108|chr5      ( 935) 1881 303.0 1.8e-81
CCDS75338.1 PCDHGA8 gene_id:9708|Hs108|chr5        ( 820) 1877 302.3 2.5e-81
CCDS47291.1 PCDHGA8 gene_id:9708|Hs108|chr5        ( 932) 1877 302.4 2.7e-81
CCDS75332.1 PCDHGB2 gene_id:56103|Hs108|chr5       ( 811) 1874 301.8 3.4e-81
CCDS58981.1 PCDHGA9 gene_id:56107|Hs108|chr5       ( 932) 1873 301.7 4.2e-81
CCDS75341.1 PCDHGA9 gene_id:56107|Hs108|chr5       ( 828) 1867 300.8 7.3e-81
CCDS75333.1 PCDHGA5 gene_id:56110|Hs108|chr5       ( 813) 1866 300.6   8e-81
CCDS54925.1 PCDHGA5 gene_id:56110|Hs108|chr5       ( 931) 1866 300.7 8.9e-81


>>CCDS54918.1 PCDHA7 gene_id:56141|Hs108|chr5             (937 aa)
 initn: 6164 init1: 6164 opt: 6164  Z-score: 5150.6  bits: 964.4 E(32554):    0
Smith-Waterman score: 6164; 100.0% identity (100.0% similar) in 937 aa overlap (1-937:1-937)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
              850       860       870       880       890       900

              910       920       930       
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::
CCDS54 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       

>>CCDS54917.1 PCDHA5 gene_id:56143|Hs108|chr5             (936 aa)
 initn: 5007 init1: 5007 opt: 5007  Z-score: 4185.1  bits: 785.7 E(32554):    0
Smith-Waterman score: 5007; 82.7% identity (91.9% similar) in 927 aa overlap (11-937:10-936)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
                 : .:::. ..:: :.:: ::::::.:::::::.:::::::::::::::::
CCDS54  MVYSRRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : :::::::::::::::::::::::::: : :::::::::::.::::::::.
CCDS54 PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       : ::::::::: :   .. ::: :::  ::::::::::: ::: :: : :::.::::: :
CCDS54 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       :: :...... : ::::: :::::: : .::. :::::::::::::::::.::: :::::
CCDS54 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
        ::...:.:.: ::.  :::::. :::: :::.: .:.: ::. :  :.:::: ..  .:
CCDS54 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : : :..:.:.  ...: ..:.::.  ::.::: :.:...:::::.:....:.: ::. 
CCDS54 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  .:::.:::: ::: :.:::::::: :.:::::::::::::::::::::::::::.
CCDS54 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::: ::::::::::::::::::::::::.::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.:::::::::: :::::::::::::::::::: :
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       :::::::::::::. ..: ::::::::::::::::.::::.:::::::::::::::: ::
CCDS54 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::: : .:::. ::::::::::::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .:..:.  ::::.:::::::::.::::::::::::.:::::::::::::::::
CCDS54 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP
     720       730       740       750       760       770         

              790       800       810       820       830       840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
     780       790       800       810       820       830         

              850       860       870       880       890       900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
     840       850       860       870       880       890         

              910       920       930       
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::
CCDS54 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930      

>>CCDS47285.1 PCDHA12 gene_id:56137|Hs108|chr5            (941 aa)
 initn: 3862 init1: 3862 opt: 4884  Z-score: 4082.4  bits: 766.7 E(32554):    0
Smith-Waterman score: 4884; 80.7% identity (90.6% similar) in 942 aa overlap (1-937:3-941)

                 10        20        30        40        50        
pF1KE0   MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAE
         .. : :  ::...::: ...:::::.: ::::::: ::::::.:::::::::::::::
CCDS47 MVIIGPRG--PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAE
                 10        20        30        40        50        

       60        70        80        90       100       110        
pF1KE0 LVPRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFH
       :::::::.. : .::::::::::::::::::::::.::::::::::::::::.:::::::
CCDS47 LVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFH
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KE0 VDVEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYF
       :::::::::::::::   .... ..:: ::::.:::::::::::: :.:::: :: :: :
CCDS47 VDVEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENF
      120       130       140       150       160       170        

      180        190       200       210       220       230       
pF1KE0 FLDVPTS-NQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNND
        : . :. .... :  ::::::::::.::.:.::: . :::::::::.::. ::::: ::
CCDS47 ELKIKTKKDKSILPE-LVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVND
      180       190        200       210       220       230       

       240       250       260       270       280       290       
pF1KE0 NAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDP
       :.:.::.  : : : :::.  : ::. :::: ::::::.: :...  .  . :  : ..:
CCDS47 NGPAFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINP
       240       250       260       270       280       290       

       300       310       320       330       340       350       
pF1KE0 LSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSL
        .: : . :..::::. :..: :.:.:::.: .:::  :::::.:::::.:.. .:::::
CCDS47 DTGEIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSL
       300       310       320       330       340       350       

       360       370       380       390       400       410       
pF1KE0 PIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRES
       :. :::: ::::.:::: ::: :.:::: :::::.::::::::.::::::::::::::::
CCDS47 PVQEDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRES
       360       370       380       390       400       410       

       420       430       440       450       460       470       
pF1KE0 VSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS47 VSAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       420       430       440       450       460       470       

       480       490       500       510       520       530       
pF1KE0 SAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       :: :::::::::::::::: ::::.:::::::::::::::::::::::::::::::::::
CCDS47 SAWDADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       480       490       500       510       520       530       

       540       550       560       570       580       590       
pF1KE0 RDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAV
       ::::::::::::::::::::::::::::::  .:..:::: :::::::::::::::::::
CCDS47 RDAGVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAV
       540       550       560       570       580       590       

       600       610       620       630       640       650       
pF1KE0 DADSGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEP
       ::::::::::::::::.:.:: :::.:::::::::::: :::.:::::::::::::::::
CCDS47 DADSGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEP
       600       610       620       630       640       650       

       660       670       680       690       700       710       
pF1KE0 SLTATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLL
       .::.::::::::::.:::::.:::::.: . ::. :::.:::::::::::::::::::::
CCDS47 ALTSTATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLL
       660       670       680       690       700       710       

       720       730       740       750       760       770       
pF1KE0 YTALRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLP
       ::::::::: . . :.  ::::::::::::::.::::::::::.:.::::::::::::: 
CCDS47 YTALRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQ
       720       730       740       750       760       770       

       780           790       800       810       820       830   
pF1KE0 QGPSSTDNP----RQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
        .  .  ::    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSREDCLNPPSEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
       780       790       800       810       820       830       

           840       850       860       870       880       890   
pF1KE0 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
       840       850       860       870       880       890       

           900       910       920       930       
pF1KE0 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       900       910       920       930       940 

>>CCDS54920.1 PCDHA9 gene_id:9752|Hs108|chr5              (950 aa)
 initn: 4485 init1: 4485 opt: 4505  Z-score: 3766.0  bits: 708.2 E(32554): 1.9e-203
Smith-Waterman score: 5493; 90.1% identity (94.6% similar) in 943 aa overlap (8-937:8-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :: :. ::: ..::: : .: :::::::::::.::.:::::::::::::::::
CCDS54 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::.   : ::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS54 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS54 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
       :::::::::::::::::::::::::::::::::::.:::::::::::::::. .::.:. 
CCDS54 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::: ::::.::::.: :  .::::::::::.::::::::.::::::::: :::::::::
CCDS54 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :.:::.:::::::::::::::::::::::::::::::::::::
CCDS54 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.::. :: ::: :.: :::::: ::.::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: .:.:::::::::::::::::::::::::::.::::::::::::.::
CCDS54 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::.:::::.: .:::. :::::::::::::::::::::::::::.
CCDS54 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
              670       680       690       700       710       720

              730       740       750       760       770          
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL----
       :::::  .:: :.  ::::::::::::::.:::::::::::::  :::::::::.:    
CCDS54 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA
              730       740       750       760       770       780

                780        790       800       810       820       
pF1KE0 --------PQGPS-STDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
               :.. : :: .::::::::::::::::::::::::::::::::::::::::::
CCDS54 GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>CCDS54916.1 PCDHA4 gene_id:56144|Hs108|chr5             (947 aa)
 initn: 4219 init1: 4219 opt: 4239  Z-score: 3544.0  bits: 667.1 E(32554): 4.4e-191
Smith-Waterman score: 5235; 85.7% identity (92.8% similar) in 942 aa overlap (6-937:6-947)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
            :    .:.:::....::::::: ::::::: ::::::.:::::::::::::::::
CCDS54 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : :: ::::::::::::::::::::::: :::::::::::::.:::::::::
CCDS54 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::.:::::::::::::.:: ::::::::::::::::::::::::::::::::::::: :
CCDS54 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       . : ... :: :::.::: :::::.::. :.::::::::::::::::::::::: :::::
CCDS54 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .::::.: :.: :::  :::::. :::::::::::::.::::.:.::..:::::.::..:
CCDS54 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : : :..:::::....: ::..:::  ::.::: :.::: : :::.:.: . :::::: 
CCDS54 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  ::::.:::: :.:.:::: :::::: .::::::::::::::::::::::::::::
CCDS54 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::::::::::::::::::::::::::::::::.::::
CCDS54 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::::::.::::::: :::: :::.:::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::::::::::::::::::::.::
CCDS54 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::: .: .::.. ::::::::::::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .::::.  ::::::::::::::.::::: :::::::::::::::::::::.. 
CCDS54 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
              730       740       750       760       770       780

                        790       800       810       820       830
pF1KE0 SSTDN----------PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
       .  :.          :::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DREDQLQTTEESFAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
              790       800       810       820       830       840

              840       850       860       870       880       890
pF1KE0 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
              850       860       870       880       890       900

              900       910       920       930       
pF1KE0 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       

>>CCDS54915.1 PCDHA3 gene_id:56145|Hs108|chr5             (950 aa)
 initn: 4078 init1: 4078 opt: 4100  Z-score: 3428.0  bits: 645.6 E(32554): 1.3e-184
Smith-Waterman score: 5074; 82.9% identity (91.4% similar) in 943 aa overlap (8-937:8-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
              :::.. ::: ...::: :.: ::::::: ::::::.:::::::::::::::::
CCDS54 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
CCDS54 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       ::::::::: :::: . .::::.:::   ::: :::::::::: :.:::: :. .::: :
CCDS54 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::  .....: :::::.: :.::.::. .::.:: ::::::::::.:: ::::: :::::
CCDS54 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .:.::.: :.: ::.  ::::.  ::.:::::.: :: :::..:.: :: ::::.::..:
CCDS54 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        :.: :..:::::....: :::.::: ::.. :::::.:.::.:::.:.:.. :::::. 
CCDS54 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::.  .:::.:::: ::: ::::::::::::.::::::::::::::::::: ::::::::
CCDS54 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       :::::::::::::::::::::::::::::::::::.: ::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: ::::: :::: ::::::::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: ..:: ::::::::::::::::::::.::::::::::::::::::::
CCDS54 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::.:: : .:::. :::::::::.::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::: .:: :.  ::::::::::::::.::::.:::::::: :::::::::::::  :
CCDS54 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

                           790       800       810       820       
pF1KE0 SSTD-------------NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
        : :             .::::::::::::::::::::::::::::::::::::::::::
CCDS54 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>CCDS4240.1 PCDHA13 gene_id:56136|Hs108|chr5             (950 aa)
 initn: 3982 init1: 3982 opt: 4015  Z-score: 3357.1  bits: 632.5 E(32554): 1.1e-180
Smith-Waterman score: 4992; 81.5% identity (91.0% similar) in 942 aa overlap (9-937:9-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
               :  :.:::...::::::.: ::::::::::::::.:::::::::::::::::
CCDS42 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
CCDS42 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :.:.:::::::.:: ... ..:::::: ..::::.:::::::: :. :::::.::.:: :
CCDS42 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       :. .: .:.. :.::::: :::::  :  :::::.::::::::::::::::.:: :::::
CCDS42 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
        : ...: : . ::.  :::::. ::.: :.: ::::.:::   : : .   : ..: .:
CCDS42 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : . :..::::.. ..: :::::::  :.:::::.::::.:::::::..:.::::::: 
CCDS42 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       ::.::...:.:::: ::: : ::::::.:::.::::::::.:::::::::::::::::::
CCDS42 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: 
CCDS42 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::::::::::::::::::::::::::::::::::::.
CCDS42 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.: .:..::.: ::.:::::::::::::::::::
CCDS42 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       :::::::::::: .:.:: :::::::::::::::: :::.:::.:::::::::::::.::
CCDS42 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::.:::::::::.:::::: : .:::. ::::::::::::::::::::::::::::
CCDS42 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770          
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQ--
       :::::: .::::.  :::::::::.::::.::::: :::::::: ::::::::::::   
CCDS42 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL
              730       740       750       760       770       780

            780            790       800       810       820       
pF1KE0 ------GPSSTDN-----PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
             :    :.     ::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSAEGTGQREEDSECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>CCDS54913.1 PCDHA1 gene_id:56147|Hs108|chr5             (950 aa)
 initn: 3969 init1: 3969 opt: 3991  Z-score: 3337.0  bits: 628.8 E(32554): 1.5e-179
Smith-Waterman score: 4968; 81.7% identity (91.4% similar) in 941 aa overlap (10-937:10-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
                :.: :::....:::::.: ::::::.:::::::.::::.::::::::::::
CCDS54 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : . ::::::::::::::::::::::::  :::::::::.:..::::::::.
CCDS54 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :.::::::::::: . .. .:: ::: :.::::.:::.::::: :::::: :::..:: :
CCDS54 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       :: .:..  : : : ::: ::::::::::::::::::::::: :::.::::::: :::::
CCDS54 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .::...: :.: :... ::::   :::: :::.::....::.: .: ::. ::..:  ::
CCDS54 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        : .: ..:.::.....: :.::::: ::...:: :::.:.:::::::.:..::: ::: 
CCDS54 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::  .:::.::.: ::: :.:::::::: :.:::::::::::::::::::::::::.:.
CCDS54 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::.::::::::::::::::::::::::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::: ::: ::::: ::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       :::::::::::::.:.:: ::::::::::::::::.:::.:  :.::::::::::::.::
CCDS54 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::::.:.::::. ::::::::::::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770          
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL-P--
       ::::.: .:::    :::::::::.:::: ::::::::::.:::::::::::::.: :  
CCDS54 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
              730       740       750       760       770       780

              780          790       800       810       820       
pF1KE0 -------QGPSSTD---NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              :  .. :   :::::::::::::::::::::::::::::::::::::::::::
CCDS54 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>CCDS47281.1 PCDHA6 gene_id:56142|Hs108|chr5             (950 aa)
 initn: 5002 init1: 3971 opt: 3989  Z-score: 3335.4  bits: 628.5 E(32554): 1.8e-179
Smith-Waterman score: 4979; 81.5% identity (91.3% similar) in 941 aa overlap (10-937:10-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
                : . ::: ...::::..: ::::::::::::::.:::::::::::::::::
CCDS47 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       ::::: . : : ::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS47 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::.:::::::.::. .. ..: :::  :: ::::::::::.: :..:::.:: .::: :
CCDS47 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       ::  .... : .::.:.: :::::.:  .:.::::::::::::::::::.:::: :::::
CCDS47 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .:... : :.. ::.. :: ::. :::: ::: :: : :::.: :.  . ..: .:  .:
CCDS47 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        :.. :..:::.   .:: ..:.::: ::.::::::::...: :::.:...:::::::. 
CCDS47 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::: ::::.:::: : : :.::::.:::::.::::::::::::::::::::::::::::
CCDS47 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::.::::::.::::::::::::::::::::::::::::::: 
CCDS47 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: ::::::::::.::::::::::::::::::::::::::::::::
CCDS47 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::: ::::::.:::.:::::::::::
CCDS47 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       ::::::::::::: :..: .:::::::::::::::.:::.:.:::::::::::::::.::
CCDS47 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::::.: ::::. ::::::::::::::::::::::::::::
CCDS47 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::: .::::.  ::::::::::::::.:::::::::::::::: :::::::::   :
CCDS47 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP
              730       740       750       760       770       780

                           790       800       810       820       
pF1KE0 ---SSTDN----------PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
          ....:          ::::::::::::::::::::::::::::::::::::::::::
CCDS47 IMMGKAENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>CCDS54919.1 PCDHA8 gene_id:56140|Hs108|chr5             (950 aa)
 initn: 4971 init1: 3940 opt: 3956  Z-score: 3307.8  bits: 623.4 E(32554): 6.3e-178
Smith-Waterman score: 4949; 80.9% identity (91.0% similar) in 941 aa overlap (10-937:10-950)

               10        20        30        40        50        60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
                :. .:::....::::..: ::::::::::::::.:::::::::::::::::
CCDS54 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
       :::::.. : . :::::.::::::::::::::::::::::::::::::::.:::::::::
CCDS54 PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
       :::::.::::::: . ...::..:::  :::::::::::::.: :..:::::: ..::.:
CCDS54 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
       :: ..:.. : . ::::: ::::..:  ::.::::::::::::::::::.:::: :::::
CCDS54 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
       .:... : :.. ::.. :: ::. :::: ::: :: : :::.: :   . ..: .:  .:
CCDS54 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
        :.. :..:::.   .:: ..:.::: ::.::::::::...: :::.:...:::::::. 
CCDS54 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
       :::: ::::.:::: : : :.:::::::: :.:::::::::::::::::::::::: :::
CCDS54 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::.:::::::::: :::::.::::.:::.::::::::::::::::::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: :::::::::. .:::::::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
       :::::::::::::.:..  ::::::::::::::::.:::.:.:::::::::::::::.::
CCDS54 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::: : :. :::. ::::::::::::::::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
       :::::  .::.:   ::::::::::::::.:::. ::::::::::::::::::: ::   
CCDS54 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL
              730       740       750       760       770       780

                           790       800       810       820       
pF1KE0 SSTD-------------NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       .:.:             .::::::::::::::::::::::::::::::::::::::::::
CCDS54 GSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

       830       840       850       860       870       880       
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

       890       900       910       920       930       
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950




937 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:24:00 2016 done: Fri Nov  4 05:24:01 2016
 Total Scan time:  4.970 Total Display time:  0.430

Function used was FASTA [36.3.4 Apr, 2011]
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