Result of FASTA (ccds) for pF1KB9904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9904, 589 aa
  1>>>pF1KB9904 589 - 589 aa - 589 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4642+/-0.00105; mu= 3.8294+/- 0.064
 mean_var=342.3760+/-69.843, 0's: 0 Z-trim(115.0): 22  B-trim: 953 in 1/50
 Lambda= 0.069314
 statistics sampled from 15573 (15595) to 15573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.479), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19        ( 589) 4115 425.4  1e-118
CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19        ( 456) 3200 333.8   3e-91
CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2       ( 537) 1025 116.3 9.8e-26
CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2        ( 542) 1025 116.3 9.9e-26


>>CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19             (589 aa)
 initn: 4115 init1: 4115 opt: 4115  Z-score: 2245.0  bits: 425.4 E(32554): 1e-118
Smith-Waterman score: 4115; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589)

               10        20        30        40        50        60
pF1KB9 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
              490       500       510       520       530       540

              550       560       570       580         
pF1KB9 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
              550       560       570       580         

>>CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19             (456 aa)
 initn: 3200 init1: 3200 opt: 3200  Z-score: 1751.8  bits: 333.8 E(32554): 3e-91
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 456 aa overlap (134-589:1-456)

           110       120       130       140       150       160   
pF1KB9 VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIY
                                     ::::::::::::::::::::::::::::::
CCDS33                               MPKKRQALVEFEDVLGACNAVNYAADNQIY
                                             10        20        30

           170       180       190       200       210       220   
pF1KB9 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
               40        50        60        70        80        90

           230       240       250       260       270       280   
pF1KB9 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
              100       110       120       130       140       150

           290       300       310       320       330       340   
pF1KB9 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
              160       170       180       190       200       210

           350       360       370       380       390       400   
pF1KB9 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
              220       230       240       250       260       270

           410       420       430       440       450       460   
pF1KB9 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
              280       290       300       310       320       330

           470       480       490       500       510       520   
pF1KB9 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
              340       350       360       370       380       390

           530       540       550       560       570       580   
pF1KB9 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
              400       410       420       430       440       450

             
pF1KB9 TAQHAS
       ::::::
CCDS33 TAQHAS
             

>>CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2            (537 aa)
 initn: 1767 init1: 934 opt: 1025  Z-score: 575.5  bits: 116.3 E(32554): 9.8e-26
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:44-536)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
CCDS46 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
            20        30        40        50        60             

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
CCDS46 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
      70        80        90       100       110       120         

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
CCDS46 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
     130       140       150       160       170       180         

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
CCDS46 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
     190       200       210       220       230       240         

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
CCDS46 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
     250        260          270        280               290      

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
CCDS46 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
        300                 310       320       330       340      

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
CCDS46 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
        350       360       370       380       390       400      

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
CCDS46 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
        410       420       430       440       450       460      

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :::  :::
CCDS46 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
        470       480       490       500       510       520      

       580         
pF1KB9 LKLCFSTAQHAS
       :::::::..:  
CCDS46 LKLCFSTSSHL 
        530        

>>CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2             (542 aa)
 initn: 1767 init1: 934 opt: 1025  Z-score: 575.4  bits: 116.3 E(32554): 9.9e-26
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:49-541)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
CCDS17 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
       20        30        40        50        60            70    

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
CCDS17 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
           80        90       100       110       120       130    

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
CCDS17 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
          140       150       160       170       180       190    

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
CCDS17 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
          200       210       220       230       240       250    

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
CCDS17 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
          260        270           280         290             300 

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
CCDS17 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
                       310       320       330       340       350 

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
CCDS17 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
             360       370       380       390       400       410 

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
CCDS17 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
             420       430       440       450       460       470 

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :::  :::
CCDS17 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
             480       490       500       510       520       530 

       580         
pF1KB9 LKLCFSTAQHAS
       :::::::..:  
CCDS17 LKLCFSTSSHL 
             540   




589 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:27:03 2016 done: Sat Nov  5 21:27:04 2016
 Total Scan time:  3.700 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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