Result of FASTA (ccds) for pF1KB6926
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6926, 228 aa
  1>>>pF1KB6926 228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2297+/-0.00106; mu= 14.1228+/- 0.064
 mean_var=78.2513+/-15.299, 0's: 0 Z-trim(103.9): 218  B-trim: 4 in 1/49
 Lambda= 0.144987
 statistics sampled from 7386 (7626) to 7386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.234), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17       ( 228) 1491 321.6 2.7e-88
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17       ( 223) 1263 273.9 5.9e-74
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17       ( 196) 1252 271.5 2.7e-73
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17       ( 216) 1155 251.3 3.7e-67
CCDS54162.1 RAB37 gene_id:326624|Hs108|chr17       ( 186) 1006 220.1 7.9e-58
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16        ( 256)  970 212.6 1.9e-55
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16        ( 190)  959 210.2 7.3e-55
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19         ( 207)  646 144.8   4e-35
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15        ( 207)  632 141.9   3e-34
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2          ( 200)  615 138.3 3.5e-33
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11        ( 201)  599 134.9 3.5e-32
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1           ( 203)  597 134.5 4.8e-32
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2          ( 205)  585 132.0 2.7e-31
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8           ( 212)  568 128.5 3.3e-30
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14         ( 216)  568 128.5 3.4e-30
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14       ( 212)  544 123.5 1.1e-28
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12        ( 201)  527 119.9 1.2e-27
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7        ( 217)  524 119.3   2e-27
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9          ( 215)  518 118.0 4.7e-27
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5         ( 227)  514 117.2 8.8e-27
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19         ( 220)  512 116.8 1.1e-26
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3        ( 212)  511 116.6 1.3e-26
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19         ( 219)  508 115.9   2e-26
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1            ( 219)  507 115.7 2.4e-26
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11         ( 203)  500 114.2 6.1e-26
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12          ( 215)  486 111.3 4.9e-25
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX       ( 213)  484 110.9 6.5e-25
CCDS6662.1 RASEF gene_id:158158|Hs108|chr9         ( 740)  487 112.0 1.1e-24
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19        ( 213)  478 109.7 1.5e-24
CCDS56537.1 RAB2A gene_id:5862|Hs108|chr8          ( 188)  476 109.2 1.9e-24
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10         ( 206)  475 109.0 2.3e-24
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3           ( 215)  475 109.0 2.4e-24
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1          ( 218)  473 108.6 3.2e-24
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17         ( 216)  470 108.0   5e-24
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17         ( 249)  470 108.0 5.5e-24
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15        ( 216)  469 107.8 5.7e-24
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18       ( 244)  465 107.0 1.1e-23
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11        ( 217)  462 106.3 1.6e-23
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3          ( 208)  461 106.1 1.8e-23
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12      ( 731)  465 107.4 2.6e-23
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  458 105.5 2.8e-23
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19        ( 218)  458 105.5 2.9e-23
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  454 104.6 4.9e-23
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1         ( 213)  451 104.0 7.7e-23
CCDS75442.1 RAB44 gene_id:401258|Hs108|chr6        (1021)  459 106.2   8e-23
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4         ( 229)  434 100.5 9.6e-22
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX        ( 221)  432 100.1 1.2e-21
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2          ( 212)  416 96.7 1.2e-20
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2       ( 254)  413 96.1 2.2e-20
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX         ( 237)  412 95.9 2.4e-20


>>CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17            (228 aa)
 initn: 1491 init1: 1491 opt: 1491  Z-score: 1698.8  bits: 321.6 E(32554): 2.7e-88
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KB6 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAK
              130       140       150       160       170       180

              190       200       210       220        
pF1KB6 TGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
              190       200       210       220        

>>CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17            (223 aa)
 initn: 1252 init1: 1252 opt: 1263  Z-score: 1441.2  bits: 273.9 E(32554): 5.9e-74
Smith-Waterman score: 1263; 97.0% identity (98.0% similar) in 202 aa overlap (29-228:22-223)

               10        20        30          40        50        
pF1KB6 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGN--SKVMLLGDTGVGKTCFLIQFKDGA
                                   : :: .  .:::::::::::::::::::::::
CCDS32        MTGTPGAVATRDGEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGA
                      10        20        30        40        50   

       60        70        80        90       100       110        
pF1KB6 FLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDIT
            60        70        80        90       100       110   

      120       130       140       150       160       170        
pF1KB6 NKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETS
           120       130       140       150       160       170   

      180       190       200       210       220        
pF1KB6 AKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
           180       190       200       210       220   

>>CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17            (196 aa)
 initn: 1252 init1: 1252 opt: 1252  Z-score: 1429.5  bits: 271.5 E(32554): 2.7e-73
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 193 aa overlap (36-228:4-196)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     ::::::::::::::::::::::::::::::
CCDS82                            MCCKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                          10        20        30   

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
            40        50        60        70        80        90   

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
           100       110       120       130       140       150   

         190       200       210       220        
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       :::::::::::::::::::::::::::::::::::::::::::
CCDS82 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
           160       170       180       190      

>>CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17            (216 aa)
 initn: 1155 init1: 1155 opt: 1155  Z-score: 1319.3  bits: 251.3 E(32554): 3.7e-67
Smith-Waterman score: 1155; 91.7% identity (96.4% similar) in 193 aa overlap (36-228:24-216)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     :..:.::.::::: .:.:: .: :. :.: 
CCDS11        MDLQRPDSYQGGAGPDFNDHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFS
                      10        20        30        40        50   

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       ::::: : ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
            60        70        80        90       100       110   

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
           120       130       140       150       160       170   

         190       200       210       220        
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       :::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
           180       190       200       210      

>>CCDS54162.1 RAB37 gene_id:326624|Hs108|chr17            (186 aa)
 initn: 1006 init1: 1006 opt: 1006  Z-score: 1151.7  bits: 220.1 E(32554): 7.9e-58
Smith-Waterman score: 1006; 99.4% identity (100.0% similar) in 156 aa overlap (73-228:31-186)

             50        60        70        80        90       100  
pF1KB6 TGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTH
                                     .:::::::::::::::::::::::::::::
CCDS54 MTGTPGAVATRDGEAPERSPPCSPSYDLTGKNKVVTVDGVRVKLQIWDTAGQERFRSVTH
               10        20        30        40        50        60

            110       120       130       140       150       160  
pF1KB6 AYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSED
               70        80        90       100       110       120

            170       180       190       200       210       220  
pF1KB6 GETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRS
              130       140       150       160       170       180

             
pF1KB6 SCCSFM
       ::::::
CCDS54 SCCSFM
             

>>CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16             (256 aa)
 initn: 970 init1: 970 opt: 970  Z-score: 1109.1  bits: 212.6 E(32554): 1.9e-55
Smith-Waterman score: 970; 73.7% identity (92.6% similar) in 190 aa overlap (36-225:65-254)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     ::::.::.::::::.:..:::::::.::::
CCDS10 LSGPDAPPNGPLQPGRPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI
           40        50        60        70        80        90    

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       .::::::::::. ::::.::::.::::::::::::::::::::.:::::::.:::.::::
CCDS10 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN
          100       110       120       130       140       150    

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       :.:::::::::::.::..::::::.: . :::.. :::: ::.:::.::.:::::::.::
CCDS10 IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV
          160       170       180       190       200       210    

         190       200       210       220        
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       .::: ::::::: :. .  .:: :...:::. . . .:::   
CCDS10 DLAFTAIAKELKQRSMKAPSEPRFRLHDYVKREGRGASCCRP 
          220       230       240       250       

>>CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16             (190 aa)
 initn: 959 init1: 959 opt: 959  Z-score: 1098.4  bits: 210.2 E(32554): 7.3e-55
Smith-Waterman score: 959; 73.4% identity (92.6% similar) in 188 aa overlap (38-225:1-188)

        10        20        30        40        50        60       
pF1KB6 HGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIAT
                                     ::.::.::::::.:..:::::::.::::.:
CCDS76                               MLVGDSGVGKTCLLVRFKDGAFLAGTFIST
                                             10        20        30

        70        80        90       100       110       120       
pF1KB6 VGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIR
       :::::::::. ::::.::::.::::::::::::::::::::.:::::::.:::.:::::.
CCDS76 VGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KB6 AWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVEL
       :::::::::::.::..::::::.: . :::.. :::: ::.:::.::.:::::::.::.:
CCDS76 AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL
              100       110       120       130       140       150

       190       200       210       220        
pF1KB6 AFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
       :: ::::::: :. .  .:: :...:::. . . .:::   
CCDS76 AFTAIAKELKQRSMKAPSEPRFRLHDYVKREGRGASCCRP 
              160       170       180       190 

>>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19              (207 aa)
 initn: 649 init1: 537 opt: 646  Z-score: 744.1  bits: 144.8 E(32554): 4e-35
Smith-Waterman score: 646; 51.6% identity (81.2% similar) in 192 aa overlap (36-223:10-200)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     :..:.::.:::::: :..:.. :: : :::
CCDS12                      MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFI
                                    10        20        30         

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       .:.::::. ... .:: :.::::::::::::::..: :::: :....:.:::::..::::
CCDS12 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN
       40        50        60        70        80        90        

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       :: :. .:.:.:. ::  :.:::: :....: . .: :: :: .::. :.:::::...::
CCDS12 IRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV
      100       110       120       130       140       150        

         190       200           210       220          
pF1KB6 ELAFLAIAKELKYRAGHQ--ADEP--SFQIRDYVESQKKRSSCCSFM  
       : ::...:...: .  ..  .. :  : :    . .:.::::       
CCDS12 ENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
      160       170       180       190       200       

>>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15             (207 aa)
 initn: 626 init1: 531 opt: 632  Z-score: 728.3  bits: 141.9 E(32554): 3e-34
Smith-Waterman score: 632; 49.7% identity (79.8% similar) in 193 aa overlap (36-227:10-201)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     :..:.::.::::::.:..:.. :: . :::
CCDS10                      MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAF-NTTFI
                                    10        20        30         

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       .:.::::. ... .:: ..::::::::::::::..: :::: :....:.:::::..::::
CCDS10 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN
       40        50        60        70        80        90        

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       :. :. .:.:.:. ::  :.:::: ::...: . .: :: :: .::. :::::::.. ::
CCDS10 IKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANV
      100       110       120       130       140       150        

         190       200        210       220             
pF1KB6 ELAFLAIAKELKYRAGHQA-DEPSFQIRDYVESQKKRSSCCSFM     
       : ::...:...  . ...  :  :      :.  ..::.  ::      
CCDS10 EEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
      160       170       180       190       200       

>>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2               (200 aa)
 initn: 625 init1: 506 opt: 615  Z-score: 709.3  bits: 138.3 E(32554): 3.5e-33
Smith-Waterman score: 615; 49.2% identity (78.8% similar) in 193 aa overlap (36-225:11-200)

          10        20        30        40        50        60     
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
                                     :..:.::.:::::: :..:.: :: . :::
CCDS17                     MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFI
                                   10        20        30          

          70        80        90       100       110       120     
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
       .:.::::. :.: ..: ..:::::::::::::...: .::: :....:.::::: .::.:
CCDS17 STIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFEN
      40        50        60        70        80        90         

         130       140       150       160       170       180     
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
       :  :: .: :.:..::  :::::: ::...::. .  :: .:::.:. :.:::::...:.
CCDS17 ISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINI
     100       110       120       130       140       150         

         190       200       210          220        
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVES---QKKRSSCCSFM
       : :::..:...  ..   . ::. .  :   .      .:.::   
CCDS17 EKAFLTLAEDILRKT--PVKEPNSENVDISSGGGVTGWKSKCC   
     160       170         180       190       200   




228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:09:00 2016 done: Fri Nov  4 12:09:01 2016
 Total Scan time:  1.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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