Result of FASTA (ccds) for pF1KB6881
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6881, 181 aa
  1>>>pF1KB6881 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2109+/-0.00104; mu= 13.5049+/- 0.063
 mean_var=87.6093+/-18.868, 0's: 0 Z-trim(104.8): 165  B-trim: 282 in 1/48
 Lambda= 0.137025
 statistics sampled from 7876 (8078) to 7876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.248), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12            ( 181) 1186 244.3 3.1e-65
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1             ( 181) 1153 237.7 2.9e-63
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3             ( 180)  960 199.6 8.7e-52
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7            ( 180)  957 199.0 1.3e-51
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14            ( 175)  860 179.8 7.7e-46
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  719 152.0 1.9e-37
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5           ( 574)  697 148.1   9e-36
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5          ( 569)  613 131.5 8.9e-31
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2          ( 179)  598 128.0   3e-30
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10        ( 179)  598 128.0   3e-30
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5           ( 546)  584 125.7 4.6e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11            ( 184)  561 120.7 4.9e-28
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3          ( 192)  545 117.6 4.6e-27
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10            ( 182)  541 116.8 7.6e-27
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2          ( 192)  525 113.6 7.1e-26
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2         ( 201)  525 113.6 7.3e-26
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12           ( 135)  507 109.9 6.5e-25
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7          ( 200)  505 109.7 1.1e-24
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2         ( 142)  490 106.6 6.9e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17       ( 179)  491 106.9 7.1e-24
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17          ( 201)  474 103.6 7.9e-23
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3           ( 186)  472 103.1 9.8e-23
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13        ( 196)  448 98.4 2.7e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17       (  88)  432 94.9 1.4e-20
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17       ( 141)  432 95.1 1.9e-20
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17   ( 177)  432 95.2 2.3e-20
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17       ( 177)  432 95.2 2.3e-20
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17   ( 125)  426 93.9   4e-20
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17       ( 125)  426 93.9   4e-20
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17       (  95)  424 93.4 4.4e-20
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17   (  95)  424 93.4 4.4e-20
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3          ( 186)  399 88.7 2.2e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1         ( 186)  386 86.1 1.3e-17
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11           ( 157)  370 82.9   1e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 201)  354 79.8 1.1e-15
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5         ( 204)  322 73.5 8.9e-14
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428)  321 73.6 1.7e-13
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 173)  311 71.3 3.6e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5          ( 198)  307 70.5 6.8e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10         ( 198)  294 68.0   4e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5         ( 244)  295 68.3 4.1e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 154)  292 67.5 4.4e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1        ( 147)  281 65.3 1.9e-11


>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12                 (181 aa)
 initn: 1186 init1: 1186 opt: 1186  Z-score: 1284.6  bits: 244.3 E(32554): 3.1e-65
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
              130       140       150       160       170       180

        
pF1KB6 K
       :
CCDS87 K
        

>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1                  (181 aa)
 initn: 1153 init1: 1153 opt: 1153  Z-score: 1249.3  bits: 237.7 E(32554): 2.9e-63
Smith-Waterman score: 1153; 96.1% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :::::.::.:.:.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
              130       140       150       160       170       180

        
pF1KB6 K
       :
CCDS15 K
        

>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3                  (180 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1043.2  bits: 199.6 E(32554): 8.7e-52
Smith-Waterman score: 960; 78.9% identity (94.4% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::  ...:.. :.:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       : ::::::::::.:::::.::::::::::::::::::::..:. .::..::  :::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       ::.:::::::::::  .:.::::::.:::.:.::.::::::.: :::::::::.:.:...
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
              130       140       150       160       170       180

        
pF1KB6 K

>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7                 (180 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1040.0  bits: 199.0 E(32554): 1.3e-51
Smith-Waterman score: 957; 78.9% identity (93.3% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::   . :.. ..:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       : ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       :::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.:::::...:...
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
              130       140       150       160       170       180

        
pF1KB6 K

>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14                 (175 aa)
 initn: 878 init1: 836 opt: 860  Z-score: 936.5  bits: 179.8 E(32554): 7.7e-46
Smith-Waterman score: 860; 69.5% identity (90.2% similar) in 174 aa overlap (6-179:2-175)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
            :..:....:.:::::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96     MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ..:.:::::::::::::::::. .:::::::::  ::.:..:::.:: :.. . :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       .:.::::::::.::.  :: .::::  .: ::::.: .:::::::::::: ::... :. 
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 
        120       130       140       150       160       170      

        
pF1KB6 K

>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12                (181 aa)
 initn: 719 init1: 719 opt: 719  Z-score: 785.7  bits: 152.0 E(32554): 1.9e-37
Smith-Waterman score: 719; 56.9% identity (87.8% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::..:.....::.: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
       ..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       :.:::::::. .::...:....::: .:. :.: :  : ::.: :: :...::.. ::..
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
              130       140       150       160       170       180

        
pF1KB6 K
       .
CCDS44 Q
        

>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5                (574 aa)
 initn: 694 init1: 558 opt: 697  Z-score: 755.7  bits: 148.1 E(32554): 9e-36
Smith-Waterman score: 697; 62.3% identity (85.6% similar) in 167 aa overlap (13-177:399-565)

                                 10         20        30        40 
pF1KB6                   MGNIFGNLLKSLIGKK-EMRILMVGLDAAGKTTILYKLKLGE
                                     :: : :.:.. .:::.:::::::.:::  :
CCDS39 KQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDE
      370       380       390       400       410       420        

              50        60        70        80        90       100 
pF1KB6 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
       ..  :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..
CCDS39 FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRIS
      430       440       450       460       470       480        

             110       120       130       140        150       160
pF1KB6 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCA
       ::. :: ..:.: :::::.::.::::::. .:... :::. :.::.:   :.::::.  :
CCDS39 EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDA
      490       500       510       520       530       540        

              170       180      
pF1KB6 TSGDGLYEGLDWLANQLKNKK     
        :: :::::::::. ::         
CCDS39 RSGMGLYEGLDWLSRQLVAAGVLDVA
      550       560       570    

>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5               (569 aa)
 initn: 606 init1: 558 opt: 613  Z-score: 666.0  bits: 131.5 E(32554): 8.9e-31
Smith-Waterman score: 613; 60.5% identity (85.5% similar) in 152 aa overlap (13-162:399-550)

                                 10         20        30        40 
pF1KB6                   MGNIFGNLLKSLIGKK-EMRILMVGLDAAGKTTILYKLKLGE
                                     :: : :.:.. .:::.:::::::.:::  :
CCDS43 KQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDE
      370       380       390       400       410       420        

              50        60        70        80        90       100 
pF1KB6 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
       ..  :::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..
CCDS43 FMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRIS
      430       440       450       460       470       480        

             110       120       130       140        150       160
pF1KB6 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCA
       ::. :: ..:.: :::::.::.::::::. .:... :::. :.::.:   :.::::.  :
CCDS43 EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDA
      490       500       510       520       530       540        

              170       180 
pF1KB6 TSGDGLYEGLDWLANQLKNKK
        :                   
CCDS43 RSVFQIICDQYTGKEVVTEKG
      550       560         

>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2               (179 aa)
 initn: 588 init1: 588 opt: 598  Z-score: 656.4  bits: 128.0 E(32554): 3e-30
Smith-Waterman score: 598; 48.9% identity (79.8% similar) in 178 aa overlap (1-178:1-177)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :: .:  . . :....: ....:::: ::::::::.....:.: : :::: ::: .  .:
CCDS21 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
         : .::.:::...:  :  :. ::. .: ::::.::::.. .::::..:::...:: : 
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       ::.::::::. . :..:::.. : : :.. ..:.::: :: .:.:: .::.:. ..::  
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
     120       130       140       150       160       170         

        
pF1KB6 K

>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10             (179 aa)
 initn: 598 init1: 583 opt: 598  Z-score: 656.4  bits: 128.0 E(32554): 3e-30
Smith-Waterman score: 598; 49.7% identity (79.7% similar) in 177 aa overlap (1-177:1-176)

               10        20        30        40        50        60
pF1KB6 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       :: ::..:  ::. ..: ....:::: ::::::::.. ..:.: : :::: ::: .  ::
CCDS71 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
         : .::.:::...:  :  :..::. .:.:::: ::::.  ..:::.::::...:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
       .:.::::::. . :.::::.  : : :.. . :.::. :: .:.:: .::.:.....   
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
     120       130       140       150       160       170         

        
pF1KB6 K




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:35:31 2016 done: Fri Nov  4 14:35:32 2016
 Total Scan time:  1.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com