Result of FASTA (omim) for pF1KB6809
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6809, 159 aa
  1>>>pF1KB6809 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5684+/-0.00035; mu= 15.5898+/- 0.022
 mean_var=50.5056+/-10.293, 0's: 0 Z-trim(113.4): 22  B-trim: 0 in 0/51
 Lambda= 0.180470
 statistics sampled from 22732 (22743) to 22732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.267), width:  16
 Scan time:  5.260

The best scores are:                                      opt bits E(85289)
NP_065083 (OMIM: 608729) type-1 angiotensin II rec ( 159) 1066 284.8 3.9e-77
XP_011540102 (OMIM: 608729) PREDICTED: type-1 angi ( 171) 1013 271.0 5.9e-73
NP_001035284 (OMIM: 608729) type-1 angiotensin II  ( 152)  998 267.1 8.1e-72
XP_011540101 (OMIM: 608729) PREDICTED: type-1 angi ( 164)  945 253.3 1.2e-67
NP_001035287 (OMIM: 608729) type-1 angiotensin II  ( 147)  130 41.1 0.00084
NP_001035286 (OMIM: 608729) type-1 angiotensin II  ( 155)  130 41.1 0.00088


>>NP_065083 (OMIM: 608729) type-1 angiotensin II recepto  (159 aa)
 initn: 1066 init1: 1066 opt: 1066  Z-score: 1505.8  bits: 284.8 E(85289): 3.9e-77
Smith-Waterman score: 1066; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
               70        80        90       100       110       120

              130       140       150         
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
       :::::::::::::::::::::::::::::::::::::::
NP_065 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
              130       140       150         

>>XP_011540102 (OMIM: 608729) PREDICTED: type-1 angioten  (171 aa)
 initn: 1052 init1: 1010 opt: 1013  Z-score: 1430.7  bits: 271.0 E(85289): 5.9e-73
Smith-Waterman score: 1032; 93.0% identity (93.0% similar) in 171 aa overlap (1-159:1-171)

                           10        20        30        40        
pF1KB6 MELPAVNLK------------VILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
       :::::::::            :::::::::::::::::::::::::::::::::::::::
XP_011 MELPAVNLKCASSSVPRNHPHVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB6 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
               70        80        90       100       110       120

      110       120       130       140       150         
pF1KB6 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
              130       140       150       160       170 

>>NP_001035284 (OMIM: 608729) type-1 angiotensin II rece  (152 aa)
 initn: 777 init1: 777 opt: 998  Z-score: 1410.4  bits: 267.1 E(85289): 8.1e-72
Smith-Waterman score: 998; 95.6% identity (95.6% similar) in 159 aa overlap (1-159:1-152)

               10        20        30        40        50        60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_001 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGG-----
               70        80        90       100       110          

              130       140       150         
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
         :::::::::::::::::::::::::::::::::::::
NP_001 --FLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
           120       130       140       150  

>>XP_011540101 (OMIM: 608729) PREDICTED: type-1 angioten  (164 aa)
 initn: 763 init1: 721 opt: 945  Z-score: 1335.3  bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 964; 88.9% identity (88.9% similar) in 171 aa overlap (1-159:1-164)

                           10        20        30        40        
pF1KB6 MELPAVNLK------------VILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
       :::::::::            :::::::::::::::::::::::::::::::::::::::
XP_011 MELPAVNLKCASSSVPRNHPHVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB6 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
               70        80        90       100       110       120

      110       120       130       140       150         
pF1KB6 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
       :::::::       :::::::::::::::::::::::::::::::::::::
XP_011 MYRERGG-------FLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
                     130       140       150       160    

>>NP_001035287 (OMIM: 608729) type-1 angiotensin II rece  (147 aa)
 initn: 142 init1: 129 opt: 130  Z-score: 189.2  bits: 41.1 E(85289): 0.00084
Smith-Waterman score: 130; 91.3% identity (91.3% similar) in 23 aa overlap (1-21:1-23)

               10        20          30        40        50        
pF1KB6 MELPAVNLKVILLGHWLLTT--WGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFL
       ::::::::::::::::::::  :                                     
NP_001 MELPAVNLKVILLGHWLLTTCFWRHFSAKPRLETIELTCALCKLRSAAHRATAGLHCILR
               10        20        30        40        50        60

>>NP_001035286 (OMIM: 608729) type-1 angiotensin II rece  (155 aa)
 initn: 142 init1: 129 opt: 130  Z-score: 188.9  bits: 41.1 E(85289): 0.00088
Smith-Waterman score: 130; 91.3% identity (91.3% similar) in 23 aa overlap (1-21:1-23)

               10        20          30        40        50        
pF1KB6 MELPAVNLKVILLGHWLLTT--WGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFL
       ::::::::::::::::::::  :                                     
NP_001 MELPAVNLKVILLGHWLLTTCFWRHFSAKPRLETIELTCALCKLRSAAHRATAGLHCILR
               10        20        30        40        50        60




159 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:38:37 2016 done: Fri Nov  4 14:38:38 2016
 Total Scan time:  5.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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